PubMed:9814708 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/9814708","sourcedb":"PubMed","sourceid":"9814708","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/9814708","text":"Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4.\nOct4 is a mammalian POU transcription factor expressed by early embryo cells and germ cells. We report that the activity of Oct4 is essential for the identity of the pluripotential founder cell population in the mammalian embryo. Oct4-deficient embryos develop to the blastocyst stage, but the inner cell mass cells are not pluripotent. Instead, they are restricted to differentiation along the extraembryonic trophoblast lineage. Furthermore, in the absence of a true inner cell mass, trophoblast proliferation is not maintained in Oct4-/- embryos. Expansion of trophoblast precursors is restored, however, by an Oct4 target gene product, fibroblast growth factor-4. Therefore, Oct4 also determines paracrine growth factor signaling from stem cells to the trophectoderm.","tracks":[{"project":"bionlp-st-gro-2013-development","denotations":[{"id":"T1","span":{"begin":13,"end":35},"obj":"Cell"},{"id":"T2","span":{"begin":43,"end":52},"obj":"Eukaryote"},{"id":"T3","span":{"begin":53,"end":59},"obj":"LivingEntity"},{"id":"T4","span":{"begin":75,"end":99},"obj":"TranscriptionFactor"},{"id":"T5","span":{"begin":100,"end":104},"obj":"TranscriptionFactor"},{"id":"T6","span":{"begin":106,"end":110},"obj":"TranscriptionFactor"},{"id":"T7","span":{"begin":116,"end":125},"obj":"Eukaryote"},{"id":"T8","span":{"begin":126,"end":150},"obj":"TranscriptionFactor"},{"id":"T12","span":{"begin":187,"end":197},"obj":"Cell"},{"id":"T13","span":{"begin":230,"end":234},"obj":"TranscriptionFactor"},{"id":"T14","span":{"begin":272,"end":299},"obj":"Cell"},{"id":"T15","span":{"begin":318,"end":327},"obj":"Eukaryote"},{"id":"T16","span":{"begin":328,"end":334},"obj":"LivingEntity"},{"id":"T17","span":{"begin":336,"end":340},"obj":"TranscriptionFactor"},{"id":"T18","span":{"begin":351,"end":358},"obj":"LivingEntity"},{"id":"T19","span":{"begin":416,"end":421},"obj":"Cell"},{"id":"T24","span":{"begin":746,"end":772},"obj":"Protein"},{"id":"T25","span":{"begin":785,"end":789},"obj":"TranscriptionFactor"},{"id":"T29","span":{"begin":845,"end":855},"obj":"Cell"},{"id":"T30","span":{"begin":863,"end":876},"obj":"Cell"},{"id":"T10","span":{"begin":164,"end":182},"obj":"Cell"},{"id":"T31","span":{"begin":501,"end":535},"obj":"Cell"},{"id":"T20","span":{"begin":720,"end":744},"obj":"GeneProduct"},{"id":"T21","span":{"begin":806,"end":829},"obj":"Protein"},{"id":"E1","span":{"begin":151,"end":160},"obj":"GeneExpression"},{"id":"E3","span":{"begin":795,"end":805},"obj":"RegulatoryProcess"},{"id":"E4","span":{"begin":830,"end":839},"obj":"SignalingPathway"},{"id":"E5","span":{"begin":475,"end":490},"obj":"CellDifferentiation"}],"relations":[{"id":"R1","pred":"fromSpecies","subj":"T3","obj":"T2"},{"id":"R2","pred":"hasPart","subj":"T3","obj":"T1"},{"id":"R3","pred":"fromSpecies","subj":"T8","obj":"T7"},{"id":"R5","pred":"locatedIn","subj":"E1","obj":"T12"},{"id":"R7","pred":"fromSpecies","subj":"T16","obj":"T15"},{"id":"R4","pred":"locatedIn","subj":"E1","obj":"T10"},{"id":"R6","pred":"locatedIn","subj":"T14","obj":"T16"},{"id":"R8","pred":"hasPatient","subj":"T6","obj":"E1"},{"id":"R9","pred":"hasAgent","subj":"T25","obj":"E3"},{"id":"R10","pred":"hasPatient","subj":"E4","obj":"E3"}],"attributes":[{"subj":"T1","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T2","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T3","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T4","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T5","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T6","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T7","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T8","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T12","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T13","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T14","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T15","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T16","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T17","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T18","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T19","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T24","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T25","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T29","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T30","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T10","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T31","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T20","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"T21","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E1","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E3","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E4","pred":"source","obj":"bionlp-st-gro-2013-development"},{"subj":"E5","pred":"source","obj":"bionlp-st-gro-2013-development"}]},{"project":"Anatomy-MAT","denotations":[{"id":"T1","span":{"begin":25,"end":35},"obj":"Body_part"},{"id":"T2","span":{"begin":53,"end":59},"obj":"Body_part"},{"id":"T3","span":{"begin":170,"end":176},"obj":"Body_part"},{"id":"T4","span":{"begin":187,"end":197},"obj":"Body_part"},{"id":"T5","span":{"begin":328,"end":334},"obj":"Body_part"},{"id":"T6","span":{"begin":351,"end":358},"obj":"Body_part"},{"id":"T7","span":{"begin":374,"end":384},"obj":"Body_part"},{"id":"T9","span":{"begin":400,"end":415},"obj":"Body_part"},{"id":"T10","span":{"begin":575,"end":590},"obj":"Body_part"},{"id":"T11","span":{"begin":647,"end":654},"obj":"Body_part"},{"id":"T12","span":{"begin":845,"end":855},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"mat_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MAT_0000185"},{"id":"A2","pred":"mat_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MAT_0000226"},{"id":"A3","pred":"mat_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MAT_0000226"},{"id":"A4","pred":"mat_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/MAT_0000334"},{"id":"A5","pred":"mat_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MAT_0000226"},{"id":"A6","pred":"mat_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MAT_0000226"},{"id":"A7","pred":"mat_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MAT_0000067"},{"id":"A8","pred":"mat_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MAT_0000396"},{"id":"A9","pred":"mat_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/MAT_0000250"},{"id":"A10","pred":"mat_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/MAT_0000250"},{"id":"A11","pred":"mat_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/MAT_0000226"},{"id":"A12","pred":"mat_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/MAT_0000185"},{"subj":"T1","pred":"source","obj":"Anatomy-MAT"},{"subj":"T2","pred":"source","obj":"Anatomy-MAT"},{"subj":"T3","pred":"source","obj":"Anatomy-MAT"},{"subj":"T4","pred":"source","obj":"Anatomy-MAT"},{"subj":"T5","pred":"source","obj":"Anatomy-MAT"},{"subj":"T6","pred":"source","obj":"Anatomy-MAT"},{"subj":"T7","pred":"source","obj":"Anatomy-MAT"},{"subj":"T9","pred":"source","obj":"Anatomy-MAT"},{"subj":"T10","pred":"source","obj":"Anatomy-MAT"},{"subj":"T11","pred":"source","obj":"Anatomy-MAT"},{"subj":"T12","pred":"source","obj":"Anatomy-MAT"}]},{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":13,"end":35},"obj":"Body_part"},{"id":"T2","span":{"begin":53,"end":59},"obj":"Body_part"},{"id":"T3","span":{"begin":164,"end":176},"obj":"Body_part"},{"id":"T4","span":{"begin":187,"end":197},"obj":"Body_part"},{"id":"T5","span":{"begin":328,"end":334},"obj":"Body_part"},{"id":"T6","span":{"begin":374,"end":384},"obj":"Body_part"},{"id":"T8","span":{"begin":400,"end":421},"obj":"Body_part"},{"id":"T9","span":{"begin":516,"end":527},"obj":"Body_part"},{"id":"T10","span":{"begin":575,"end":590},"obj":"Body_part"},{"id":"T11","span":{"begin":592,"end":603},"obj":"Body_part"},{"id":"T12","span":{"begin":669,"end":680},"obj":"Body_part"},{"id":"T13","span":{"begin":746,"end":756},"obj":"Body_part"},{"id":"T14","span":{"begin":845,"end":855},"obj":"Body_part"},{"id":"T15","span":{"begin":863,"end":876},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL_0002248"},{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0000922"},{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0019248"},{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CL_0000586"},{"id":"A5","pred":"uberon_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/UBERON_0000922"},{"id":"A6","pred":"uberon_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/UBERON_0000358"},{"id":"A7","pred":"uberon_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/UBERON_0002532"},{"id":"A8","pred":"uberon_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/CL_2000020"},{"id":"A9","pred":"uberon_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/UBERON_0000088"},{"id":"A10","pred":"uberon_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/UBERON_0000087"},{"id":"A11","pred":"uberon_id","subj":"T11","obj":"http://purl.obolibrary.org/obo/UBERON_0000088"},{"id":"A12","pred":"uberon_id","subj":"T12","obj":"http://purl.obolibrary.org/obo/UBERON_0000088"},{"id":"A13","pred":"uberon_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/CL_0000057"},{"id":"A14","pred":"uberon_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/CL_0000034"},{"id":"A15","pred":"uberon_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/UBERON_0004345"},{"subj":"T1","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T2","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T3","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T4","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T5","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T6","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T8","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T9","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T10","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T11","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T12","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T13","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T14","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T15","pred":"source","obj":"Anatomy-UBERON"}]},{"project":"Glycosmos15-CL","denotations":[{"id":"T1","span":{"begin":13,"end":35},"obj":"Cell"},{"id":"T2","span":{"begin":187,"end":197},"obj":"Cell"},{"id":"T3","span":{"begin":400,"end":421},"obj":"Cell"},{"id":"T4","span":{"begin":746,"end":756},"obj":"Cell"},{"id":"T5","span":{"begin":845,"end":855},"obj":"Cell"}],"attributes":[{"id":"A1","pred":"cl_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL:0002248"},{"id":"A2","pred":"cl_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CL:0000586"},{"id":"A3","pred":"cl_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CL:2000020"},{"id":"A4","pred":"cl_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CL:0000057"},{"id":"A5","pred":"cl_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CL:0000034"},{"subj":"T1","pred":"source","obj":"Glycosmos15-CL"},{"subj":"T2","pred":"source","obj":"Glycosmos15-CL"},{"subj":"T3","pred":"source","obj":"Glycosmos15-CL"},{"subj":"T4","pred":"source","obj":"Glycosmos15-CL"},{"subj":"T5","pred":"source","obj":"Glycosmos15-CL"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"bionlp-st-gro-2013-development","color":"#b9ec93","default":true},{"id":"Anatomy-MAT","color":"#ec93d3"},{"id":"Anatomy-UBERON","color":"#93eceb"},{"id":"Glycosmos15-CL","color":"#ecd193"}]}]}}