> top > docs > PubMed:9811966 > annotations

PubMed:9811966 JSONTXT

Annnotations TAB JSON ListView MergeView

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-17 DNA denotes Promoter sequence
T2 86-102 protein denotes chicken cytokine
T3 141-144 protein denotes IL2
T4 153-157 protein denotes IL15
T5 179-195 protein denotes chicken cytokine
T6 293-301 protein denotes cytokine
T7 313-316 protein denotes IL2
T8 325-329 protein denotes IL15
T9 360-371 protein denotes chicken IL2
T10 421-425 protein denotes IL2s
T11 449-455 DNA denotes exon 2
T12 460-467 DNA denotes introns
T13 503-506 protein denotes IL2
T14 569-590 DNA denotes 3'untranslated region
T15 594-600 DNA denotes exon 4
T16 610-626 DNA denotes single-copy gene
T17 781-798 protein denotes protein structure
T18 865-895 DNA denotes potential regulatory sequences
T19 958-966 DNA denotes promoter
T20 1002-1023 DNA denotes NF-AT/ "AP-1" element
T21 1027-1048 DNA denotes CD28 response element
T22 1053-1065 DNA denotes AP-1 element
T23 1070-1083 DNA denotes NF-AT element
T24 1093-1139 DNA denotes AP-1 part of an AP-1/octamer composite element
T25 1145-1164 protein denotes mammalian NF-kappaB
T26 1169-1190 DNA denotes octamer binding sites
T27 1251-1260 protein denotes NF-kappaB
T28 1265-1289 DNA denotes octamer-binding elements
T29 1297-1317 DNA denotes chicken IL2 promoter
T30 1347-1367 DNA denotes mammalian homologues
T31 1476-1499 DNA denotes mammalian IL2 promoters
T32 1503-1521 DNA denotes Taq I polymorphism
T33 1559-1562 protein denotes IL2
T34 1579-1591 DNA denotes chromosome 4
T35 1603-1607 DNA denotes ANX5
T36 1627-1645 DNA denotes mouse chromosome 3
T37 1650-1668 DNA denotes human chromosome 4
T38 1688-1715 DNA denotes non-mammalian cytokine gene

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-158 Sentence denotes Promoter sequence, exon:intron structure, and synteny of genetic location show that a chicken cytokine with T-cell proliferative activity is IL2 and not IL15.
S2 159-265 Sentence denotes The gene encoding a chicken cytokine with T-cell proliferative activity was cloned, sequenced, and mapped.
S3 266-330 Sentence denotes The results show that this cytokine is chicken IL2 and not IL15.
S4 331-494 Sentence denotes The exon:intron structure of chicken IL2 corresponds almost exactly to those of mammalian IL2s with the exceptions of exon 2 and introns 2 and 3 which are shorter.
S5 495-601 Sentence denotes Chicken IL2 contains five repeats of the "instability" motif ATTTA in the 3'untranslated region in exon 4.
S6 602-712 Sentence denotes It is a single-copy gene, with neither structural (amino acid) nor promoter sequence polymorphisms identified.
S7 713-852 Sentence denotes Analysis of the predicted amino acid sequence suggests that overall protein structure is conserved, but the receptor binding sites are not.
S8 853-967 Sentence denotes A number of potential regulatory sequences similar to those found in mammals have been identified in the promoter.
S9 968-1140 Sentence denotes These include (5'-3') a composite NF-AT/ "AP-1" element, a CD28 response element, an AP-1 element, an NF-AT element, and the AP-1 part of an AP-1/octamer composite element.
S10 1141-1368 Sentence denotes The mammalian NF-kappaB and octamer binding sites seem to be absent, although there are alternative potential NF-kappaB and octamer-binding elements in the chicken IL2 promoter, in close proximity to their mammalian homologues.
S11 1369-1500 Sentence denotes Sequence comparisons also predict other potential transcription factor binding sites as yet undescribed in mammalian IL2 promoters.
S12 1501-1669 Sentence denotes A Taq I polymorphism was identified which enabled chicken IL2 to be mapped to chromosome 4, linked to ANX5, with synteny with mouse chromosome 3 and human chromosome 4.
S13 1670-1729 Sentence denotes This is the first non-mammalian cytokine gene to be mapped.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 84-137 NP denotes a chicken cytokine with T-cell proliferative activity
C3 141-144 NP denotes IL2
C2 141-157 NP denotes IL2 and not IL15
C4 177-230 NP denotes a chicken cytokine with T-cell proliferative activity
C5 288-301 NP denotes this cytokine
C6 305-329 NP denotes chicken IL2 and not IL15
C7 331-356 NP denotes The exon:intron structure
C8 360-371 NP denotes chicken IL2
C9 402-407 NP denotes those
C10 449-475 NP denotes exon 2 and introns 2 and 3
C11 476-481 NP denotes which
C12 495-506 NP denotes Chicken IL2
C13 602-604 NP denotes It
C15 853-895 NP denotes A number of potential regulatory sequences
C16 907-912 NP denotes those
C14 853-929 NP denotes A number of potential regulatory sequences similar to those found in mammals
C17 954-966 NP denotes the promoter
C18 968-973 NP denotes These
C19 1293-1317 NP denotes the chicken IL2 promoter
C20 1341-1346 NP denotes their
C21 1501-1521 NP denotes A Taq I polymorphism
C22 1537-1542 NP denotes which
C23 1551-1562 NP denotes chicken IL2
C24 1678-1710 NP denotes the first non-mammalian cytokine
R1 C4 C1 coref-ident a chicken cytokine with T-cell proliferative activity,a chicken cytokine with T-cell proliferative activity
R2 C5 C4 coref-ident this cytokine,a chicken cytokine with T-cell proliferative activity
R3 C6 C2 coref-ident chicken IL2 and not IL15,IL2 and not IL15
R4 C8 C3 coref-ident chicken IL2,IL2
R5 C9 C7 coref-pron those,The exon:intron structure
R6 C11 C10 coref-relat which,exon 2 and introns 2 and 3
R7 C12 C8 coref-ident Chicken IL2,chicken IL2
R8 C13 C12 coref-pron It,Chicken IL2
R9 C16 C15 coref-pron those,A number of potential regulatory sequences
R10 C18 C14 coref-pron These,A number of potential regulatory sequences similar to those found in mammals
R11 C19 C17 coref-ident the chicken IL2 promoter,the promoter
R12 C20 C19 coref-pron their,the chicken IL2 promoter
R13 C22 C21 coref-relat which,A Taq I polymorphism
R14 C23 C12 coref-ident chicken IL2,Chicken IL2
R15 C24 C23 coref-ident the first non-mammalian cytokine,chicken IL2

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-17 DNA_molecule denotes Promoter sequence
T2 19-40 DNA_substructure denotes exon:intron structure
T3 86-102 protein_family_or_group denotes chicken cytokine
T4 108-137 other_name denotes T-cell proliferative activity
T5 141-144 protein_molecule denotes IL2
T6 153-157 protein_molecule denotes IL15
T7 179-195 protein_family_or_group denotes chicken cytokine
T8 201-230 other_name denotes T-cell proliferative activity
T9 293-301 protein_family_or_group denotes cytokine
T10 313-316 protein_molecule denotes IL2
T11 325-329 protein_molecule denotes IL15
T12 335-356 DNA_substructure denotes exon:intron structure
T13 360-367 protein_molecule denotes chicken
T14 368-371 protein_molecule denotes IL2
T15 421-425 protein_molecule denotes IL2s
T16 449-455 DNA_domain_or_region denotes exon 2
T17 460-467 DNA_family_or_group denotes introns
T18 503-506 protein_molecule denotes IL2
T19 556-561 polynucleotide denotes ATTTA
T20 569-590 DNA_domain_or_region denotes 3'untranslated region
T21 594-600 DNA_domain_or_region denotes exon 4
T22 610-626 DNA_family_or_group denotes single-copy gene
T23 669-700 other_name denotes promoter sequence polymorphisms
T24 865-895 DNA_domain_or_region denotes potential regulatory sequences
T25 922-929 multi_cell denotes mammals
T26 958-966 DNA_domain_or_region denotes promoter
T27 1002-1023 DNA_domain_or_region denotes NF-AT/ "AP-1" element
T28 1027-1048 DNA_domain_or_region denotes CD28 response element
T29 1053-1065 DNA_domain_or_region denotes AP-1 element
T30 1070-1083 DNA_domain_or_region denotes NF-AT element
T31 1093-1139 DNA_domain_or_region denotes AP-1 part of an AP-1/octamer composite element
T32 1145-1154 protein_complex denotes mammalian
T33 1155-1164 protein_complex denotes NF-kappaB
T34 1169-1190 DNA_family_or_group denotes octamer binding sites
T35 1251-1260 protein_complex denotes NF-kappaB
T36 1265-1289 DNA_family_or_group denotes octamer-binding elements
T37 1297-1304 DNA_domain_or_region denotes chicken
T38 1305-1308 protein_molecule denotes IL2
T39 1347-1367 DNA_family_or_group denotes mammalian homologues
T40 1476-1485 DNA_domain_or_region denotes mammalian
T41 1486-1489 protein_molecule denotes IL2
T42 1503-1521 DNA_domain_or_region denotes Taq I polymorphism
T43 1559-1562 protein_molecule denotes IL2
T44 1579-1591 DNA_molecule denotes chromosome 4
T45 1603-1607 DNA_domain_or_region denotes ANX5
T46 1627-1645 DNA_molecule denotes mouse chromosome 3
T47 1650-1655 DNA_molecule denotes human
T48 1656-1668 DNA_molecule denotes chromosome 4
T49 1688-1715 DNA_family_or_group denotes non-mammalian cytokine gene