PubMed:9734661
Annnotations
jnlpba-st-training
{"project":"jnlpba-st-training","denotations":[{"id":"T1","span":{"begin":38,"end":104},"obj":"cell_line"},{"id":"T2","span":{"begin":221,"end":240},"obj":"cell_line"},{"id":"T3","span":{"begin":242,"end":250},"obj":"cell_line"},{"id":"T4","span":{"begin":255,"end":263},"obj":"cell_line"},{"id":"T5","span":{"begin":385,"end":388},"obj":"cell_line"},{"id":"T6","span":{"begin":401,"end":411},"obj":"cell_line"},{"id":"T7","span":{"begin":466,"end":469},"obj":"cell_line"},{"id":"T8","span":{"begin":476,"end":491},"obj":"cell_line"},{"id":"T9","span":{"begin":507,"end":535},"obj":"cell_line"},{"id":"T10","span":{"begin":551,"end":559},"obj":"cell_line"},{"id":"T11","span":{"begin":594,"end":597},"obj":"cell_line"},{"id":"T12","span":{"begin":604,"end":612},"obj":"cell_line"},{"id":"T13","span":{"begin":617,"end":625},"obj":"cell_line"},{"id":"T14","span":{"begin":731,"end":744},"obj":"cell_type"},{"id":"T15","span":{"begin":751,"end":761},"obj":"cell_line"},{"id":"T16","span":{"begin":795,"end":800},"obj":"protein"},{"id":"T17","span":{"begin":802,"end":807},"obj":"protein"},{"id":"T18","span":{"begin":812,"end":815},"obj":"protein"},{"id":"T19","span":{"begin":851,"end":856},"obj":"protein"},{"id":"T20","span":{"begin":912,"end":926},"obj":"cell_line"},{"id":"T21","span":{"begin":941,"end":944},"obj":"cell_line"},{"id":"T22","span":{"begin":963,"end":990},"obj":"cell_line"},{"id":"T23","span":{"begin":1045,"end":1053},"obj":"cell_line"},{"id":"T24","span":{"begin":1058,"end":1077},"obj":"cell_line"},{"id":"T25","span":{"begin":1142,"end":1145},"obj":"cell_line"},{"id":"T26","span":{"begin":1168,"end":1178},"obj":"cell_line"},{"id":"T27","span":{"begin":1409,"end":1412},"obj":"cell_line"}],"text":"Establishment and characterization of EBV-positive and EBV-negative primary effusion lymphoma cell lines harbouring human herpesvirus type-8.\nIn this study we report on the establishment and characterization of two novel lymphoma cell lines (CRO-AP/3 and CRO-AP/5) which carry infection by human herpesvirus type-8 (HHV-8) and have derived from AIDS-related primary effusion lymphoma (PEL). These two cell lines are representative of different virologic subtypes of PEL, i.e. HHV-8+/EBV- PEL in the case of CRO-AP/3 and HHV-8+/EBV+ PEL in the case of CRO-AP/5. Consistent with the diagnosis of PEL, both CRO-AP/3 and CRO-AP/5 expressed indeterminate (i.e. non-B, non-T) phenotypes although immunogenotypic studies documented their B-cell origin. Both cell lines are devoid of genetic lesions of c-MYC, BCL-2 and p53 as well as gross rearrangements of BCL-6. Detailed histogenetic characterization of these novel PEL cell lines suggests that PEL may derive from a post-germinal centre B cell which has undergone pre-terminal differentiation. The CRO-AP/3 and CRO-AP/5 cell lines may provide a valuable model for clarifying the pathogenesis of PEL. In particular, these cell lines may help understand the relative contribution of HHV-8 and EBV to PEL growth and development and may facilitate the identification of recurrent cytogenetic abnormalities highlighting putative novel cancer related loci relevant to PEL."}
pubmed-sentences-benchmark
{"project":"pubmed-sentences-benchmark","denotations":[{"id":"S1","span":{"begin":0,"end":141},"obj":"Sentence"},{"id":"S2","span":{"begin":142,"end":390},"obj":"Sentence"},{"id":"S3","span":{"begin":391,"end":560},"obj":"Sentence"},{"id":"S4","span":{"begin":561,"end":745},"obj":"Sentence"},{"id":"S5","span":{"begin":746,"end":857},"obj":"Sentence"},{"id":"S6","span":{"begin":858,"end":1040},"obj":"Sentence"},{"id":"S7","span":{"begin":1041,"end":1146},"obj":"Sentence"},{"id":"S8","span":{"begin":1147,"end":1413},"obj":"Sentence"}],"text":"Establishment and characterization of EBV-positive and EBV-negative primary effusion lymphoma cell lines harbouring human herpesvirus type-8.\nIn this study we report on the establishment and characterization of two novel lymphoma cell lines (CRO-AP/3 and CRO-AP/5) which carry infection by human herpesvirus type-8 (HHV-8) and have derived from AIDS-related primary effusion lymphoma (PEL). These two cell lines are representative of different virologic subtypes of PEL, i.e. HHV-8+/EBV- PEL in the case of CRO-AP/3 and HHV-8+/EBV+ PEL in the case of CRO-AP/5. Consistent with the diagnosis of PEL, both CRO-AP/3 and CRO-AP/5 expressed indeterminate (i.e. non-B, non-T) phenotypes although immunogenotypic studies documented their B-cell origin. Both cell lines are devoid of genetic lesions of c-MYC, BCL-2 and p53 as well as gross rearrangements of BCL-6. Detailed histogenetic characterization of these novel PEL cell lines suggests that PEL may derive from a post-germinal centre B cell which has undergone pre-terminal differentiation. The CRO-AP/3 and CRO-AP/5 cell lines may provide a valuable model for clarifying the pathogenesis of PEL. In particular, these cell lines may help understand the relative contribution of HHV-8 and EBV to PEL growth and development and may facilitate the identification of recurrent cytogenetic abnormalities highlighting putative novel cancer related loci relevant to PEL."}
genia-medco-coref
{"project":"genia-medco-coref","denotations":[{"id":"C1","span":{"begin":116,"end":140},"obj":"NP"},{"id":"C2","span":{"begin":211,"end":264},"obj":"NP"},{"id":"C3","span":{"begin":265,"end":270},"obj":"NP"},{"id":"C4","span":{"begin":290,"end":322},"obj":"NP"},{"id":"C5","span":{"begin":345,"end":389},"obj":"NP"},{"id":"C6","span":{"begin":391,"end":411},"obj":"NP"},{"id":"C7","span":{"begin":466,"end":469},"obj":"NP"},{"id":"C8","span":{"begin":594,"end":597},"obj":"NP"},{"id":"C9","span":{"begin":599,"end":625},"obj":"NP"},{"id":"C10","span":{"begin":725,"end":730},"obj":"NP"},{"id":"C11","span":{"begin":746,"end":761},"obj":"NP"},{"id":"C12","span":{"begin":900,"end":926},"obj":"NP"},{"id":"C13","span":{"begin":941,"end":944},"obj":"NP"},{"id":"C14","span":{"begin":961,"end":990},"obj":"NP"},{"id":"C15","span":{"begin":991,"end":996},"obj":"NP"},{"id":"C16","span":{"begin":1041,"end":1077},"obj":"NP"},{"id":"C17","span":{"begin":1142,"end":1145},"obj":"NP"},{"id":"C18","span":{"begin":1162,"end":1178},"obj":"NP"},{"id":"C19","span":{"begin":1228,"end":1233},"obj":"NP"},{"id":"C20","span":{"begin":1409,"end":1412},"obj":"NP"}],"relations":[{"id":"R1","pred":"coref-relat","subj":"C3","obj":"C2"},{"id":"R2","pred":"coref-ident","subj":"C4","obj":"C1"},{"id":"R3","pred":"coref-ident","subj":"C6","obj":"C2"},{"id":"R4","pred":"coref-ident","subj":"C7","obj":"C5"},{"id":"R5","pred":"coref-ident","subj":"C8","obj":"C7"},{"id":"R6","pred":"coref-ident","subj":"C9","obj":"C6"},{"id":"R7","pred":"coref-pron","subj":"C10","obj":"C9"},{"id":"R8","pred":"coref-ident","subj":"C11","obj":"C9"},{"id":"R9","pred":"coref-ident","subj":"C12","obj":"C11"},{"id":"R10","pred":"coref-ident","subj":"C13","obj":"C8"},{"id":"R11","pred":"coref-relat","subj":"C15","obj":"C14"},{"id":"R12","pred":"coref-ident","subj":"C16","obj":"C12"},{"id":"R13","pred":"coref-ident","subj":"C17","obj":"C13"},{"id":"R14","pred":"coref-ident","subj":"C18","obj":"C16"},{"id":"R15","pred":"coref-ident","subj":"C19","obj":"C4"},{"id":"R16","pred":"coref-ident","subj":"C20","obj":"C17"}],"text":"Establishment and characterization of EBV-positive and EBV-negative primary effusion lymphoma cell lines harbouring human herpesvirus type-8.\nIn this study we report on the establishment and characterization of two novel lymphoma cell lines (CRO-AP/3 and CRO-AP/5) which carry infection by human herpesvirus type-8 (HHV-8) and have derived from AIDS-related primary effusion lymphoma (PEL). These two cell lines are representative of different virologic subtypes of PEL, i.e. HHV-8+/EBV- PEL in the case of CRO-AP/3 and HHV-8+/EBV+ PEL in the case of CRO-AP/5. Consistent with the diagnosis of PEL, both CRO-AP/3 and CRO-AP/5 expressed indeterminate (i.e. non-B, non-T) phenotypes although immunogenotypic studies documented their B-cell origin. Both cell lines are devoid of genetic lesions of c-MYC, BCL-2 and p53 as well as gross rearrangements of BCL-6. Detailed histogenetic characterization of these novel PEL cell lines suggests that PEL may derive from a post-germinal centre B cell which has undergone pre-terminal differentiation. The CRO-AP/3 and CRO-AP/5 cell lines may provide a valuable model for clarifying the pathogenesis of PEL. In particular, these cell lines may help understand the relative contribution of HHV-8 and EBV to PEL growth and development and may facilitate the identification of recurrent cytogenetic abnormalities highlighting putative novel cancer related loci relevant to PEL."}
GENIAcorpus
{"project":"GENIAcorpus","denotations":[{"id":"T1","span":{"begin":116,"end":140},"obj":"virus"},{"id":"T2","span":{"begin":221,"end":240},"obj":"cell_line"},{"id":"T3","span":{"begin":242,"end":250},"obj":"cell_line"},{"id":"T4","span":{"begin":255,"end":263},"obj":"cell_line"},{"id":"T5","span":{"begin":290,"end":314},"obj":"virus"},{"id":"T6","span":{"begin":316,"end":321},"obj":"virus"},{"id":"T7","span":{"begin":345,"end":383},"obj":"other_name"},{"id":"T8","span":{"begin":385,"end":388},"obj":"cell_line"},{"id":"T9","span":{"begin":401,"end":411},"obj":"cell_line"},{"id":"T10","span":{"begin":444,"end":462},"obj":"virus"},{"id":"T11","span":{"begin":466,"end":469},"obj":"cell_line"},{"id":"T12","span":{"begin":476,"end":481},"obj":"virus"},{"id":"T13","span":{"begin":507,"end":515},"obj":"cell_line"},{"id":"T14","span":{"begin":520,"end":525},"obj":"virus"},{"id":"T15","span":{"begin":551,"end":559},"obj":"cell_line"},{"id":"T16","span":{"begin":594,"end":597},"obj":"cell_line"},{"id":"T17","span":{"begin":604,"end":612},"obj":"cell_line"},{"id":"T18","span":{"begin":617,"end":625},"obj":"cell_line"},{"id":"T19","span":{"begin":690,"end":713},"obj":"other_name"},{"id":"T20","span":{"begin":731,"end":744},"obj":"cell_type"},{"id":"T21","span":{"begin":751,"end":761},"obj":"cell_line"},{"id":"T22","span":{"begin":795,"end":800},"obj":"protein_molecule"},{"id":"T23","span":{"begin":802,"end":807},"obj":"protein_molecule"},{"id":"T24","span":{"begin":812,"end":815},"obj":"protein_molecule"},{"id":"T25","span":{"begin":851,"end":856},"obj":"protein_molecule"},{"id":"T26","span":{"begin":912,"end":926},"obj":"cell_line"},{"id":"T27","span":{"begin":941,"end":944},"obj":"cell_line"},{"id":"T28","span":{"begin":963,"end":990},"obj":"cell_line"},{"id":"T29","span":{"begin":1011,"end":1039},"obj":"other_name"},{"id":"T30","span":{"begin":1045,"end":1053},"obj":"cell_line"},{"id":"T31","span":{"begin":1058,"end":1077},"obj":"cell_line"},{"id":"T32","span":{"begin":1142,"end":1145},"obj":"cell_line"},{"id":"T33","span":{"begin":1168,"end":1178},"obj":"cell_line"},{"id":"T34","span":{"begin":1228,"end":1233},"obj":"virus"},{"id":"T35","span":{"begin":1238,"end":1241},"obj":"virus"},{"id":"T36","span":{"begin":1245,"end":1255},"obj":"other_name"},{"id":"T37","span":{"begin":1323,"end":1348},"obj":"other_name"},{"id":"T38","span":{"begin":1409,"end":1412},"obj":"cell_line"}],"text":"Establishment and characterization of EBV-positive and EBV-negative primary effusion lymphoma cell lines harbouring human herpesvirus type-8.\nIn this study we report on the establishment and characterization of two novel lymphoma cell lines (CRO-AP/3 and CRO-AP/5) which carry infection by human herpesvirus type-8 (HHV-8) and have derived from AIDS-related primary effusion lymphoma (PEL). These two cell lines are representative of different virologic subtypes of PEL, i.e. HHV-8+/EBV- PEL in the case of CRO-AP/3 and HHV-8+/EBV+ PEL in the case of CRO-AP/5. Consistent with the diagnosis of PEL, both CRO-AP/3 and CRO-AP/5 expressed indeterminate (i.e. non-B, non-T) phenotypes although immunogenotypic studies documented their B-cell origin. Both cell lines are devoid of genetic lesions of c-MYC, BCL-2 and p53 as well as gross rearrangements of BCL-6. Detailed histogenetic characterization of these novel PEL cell lines suggests that PEL may derive from a post-germinal centre B cell which has undergone pre-terminal differentiation. The CRO-AP/3 and CRO-AP/5 cell lines may provide a valuable model for clarifying the pathogenesis of PEL. In particular, these cell lines may help understand the relative contribution of HHV-8 and EBV to PEL growth and development and may facilitate the identification of recurrent cytogenetic abnormalities highlighting putative novel cancer related loci relevant to PEL."}
sentences
{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":141},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":142,"end":390},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":391,"end":560},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":561,"end":745},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":746,"end":857},"obj":"Sentence"},{"id":"TextSentencer_T6","span":{"begin":858,"end":1040},"obj":"Sentence"},{"id":"TextSentencer_T7","span":{"begin":1041,"end":1146},"obj":"Sentence"},{"id":"TextSentencer_T8","span":{"begin":1147,"end":1413},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":141},"obj":"Sentence"},{"id":"T2","span":{"begin":142,"end":390},"obj":"Sentence"},{"id":"T3","span":{"begin":391,"end":560},"obj":"Sentence"},{"id":"T4","span":{"begin":561,"end":745},"obj":"Sentence"},{"id":"T5","span":{"begin":746,"end":857},"obj":"Sentence"},{"id":"T6","span":{"begin":858,"end":1040},"obj":"Sentence"},{"id":"T7","span":{"begin":1041,"end":1146},"obj":"Sentence"},{"id":"T8","span":{"begin":1147,"end":1413},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Establishment and characterization of EBV-positive and EBV-negative primary effusion lymphoma cell lines harbouring human herpesvirus type-8.\nIn this study we report on the establishment and characterization of two novel lymphoma cell lines (CRO-AP/3 and CRO-AP/5) which carry infection by human herpesvirus type-8 (HHV-8) and have derived from AIDS-related primary effusion lymphoma (PEL). These two cell lines are representative of different virologic subtypes of PEL, i.e. HHV-8+/EBV- PEL in the case of CRO-AP/3 and HHV-8+/EBV+ PEL in the case of CRO-AP/5. Consistent with the diagnosis of PEL, both CRO-AP/3 and CRO-AP/5 expressed indeterminate (i.e. non-B, non-T) phenotypes although immunogenotypic studies documented their B-cell origin. Both cell lines are devoid of genetic lesions of c-MYC, BCL-2 and p53 as well as gross rearrangements of BCL-6. Detailed histogenetic characterization of these novel PEL cell lines suggests that PEL may derive from a post-germinal centre B cell which has undergone pre-terminal differentiation. The CRO-AP/3 and CRO-AP/5 cell lines may provide a valuable model for clarifying the pathogenesis of PEL. In particular, these cell lines may help understand the relative contribution of HHV-8 and EBV to PEL growth and development and may facilitate the identification of recurrent cytogenetic abnormalities highlighting putative novel cancer related loci relevant to PEL."}
PubCasesHPO
{"project":"PubCasesHPO","denotations":[{"id":"AB1","span":{"begin":221,"end":229},"obj":"HP:0002665"},{"id":"TI1","span":{"begin":85,"end":93},"obj":"HP:0002665"},{"id":"AB2","span":{"begin":375,"end":383},"obj":"HP:0002665"}],"text":"Establishment and characterization of EBV-positive and EBV-negative primary effusion lymphoma cell lines harbouring human herpesvirus type-8.\nIn this study we report on the establishment and characterization of two novel lymphoma cell lines (CRO-AP/3 and CRO-AP/5) which carry infection by human herpesvirus type-8 (HHV-8) and have derived from AIDS-related primary effusion lymphoma (PEL). These two cell lines are representative of different virologic subtypes of PEL, i.e. HHV-8+/EBV- PEL in the case of CRO-AP/3 and HHV-8+/EBV+ PEL in the case of CRO-AP/5. Consistent with the diagnosis of PEL, both CRO-AP/3 and CRO-AP/5 expressed indeterminate (i.e. non-B, non-T) phenotypes although immunogenotypic studies documented their B-cell origin. Both cell lines are devoid of genetic lesions of c-MYC, BCL-2 and p53 as well as gross rearrangements of BCL-6. Detailed histogenetic characterization of these novel PEL cell lines suggests that PEL may derive from a post-germinal centre B cell which has undergone pre-terminal differentiation. The CRO-AP/3 and CRO-AP/5 cell lines may provide a valuable model for clarifying the pathogenesis of PEL. In particular, these cell lines may help understand the relative contribution of HHV-8 and EBV to PEL growth and development and may facilitate the identification of recurrent cytogenetic abnormalities highlighting putative novel cancer related loci relevant to PEL."}
PubCasesORDO
{"project":"PubCasesORDO","denotations":[{"id":"TI1","span":{"begin":68,"end":93},"obj":"ORDO:48686"},{"id":"AB1","span":{"begin":358,"end":383},"obj":"ORDO:48686"},{"id":"AB2","span":{"begin":385,"end":388},"obj":"ORDO:48686"},{"id":"AB3","span":{"begin":466,"end":469},"obj":"ORDO:48686"},{"id":"AB4","span":{"begin":488,"end":491},"obj":"ORDO:48686"},{"id":"AB5","span":{"begin":532,"end":535},"obj":"ORDO:48686"},{"id":"AB6","span":{"begin":594,"end":597},"obj":"ORDO:48686"},{"id":"AB7","span":{"begin":912,"end":915},"obj":"ORDO:48686"},{"id":"AB8","span":{"begin":941,"end":944},"obj":"ORDO:48686"},{"id":"AB9","span":{"begin":1142,"end":1145},"obj":"ORDO:48686"},{"id":"AB10","span":{"begin":1245,"end":1248},"obj":"ORDO:48686"},{"id":"AB11","span":{"begin":1409,"end":1412},"obj":"ORDO:48686"}],"namespaces":[{"prefix":"ORDO","uri":"http://www.orpha.net/ORDO/Orphanet_"}],"text":"Establishment and characterization of EBV-positive and EBV-negative primary effusion lymphoma cell lines harbouring human herpesvirus type-8.\nIn this study we report on the establishment and characterization of two novel lymphoma cell lines (CRO-AP/3 and CRO-AP/5) which carry infection by human herpesvirus type-8 (HHV-8) and have derived from AIDS-related primary effusion lymphoma (PEL). These two cell lines are representative of different virologic subtypes of PEL, i.e. HHV-8+/EBV- PEL in the case of CRO-AP/3 and HHV-8+/EBV+ PEL in the case of CRO-AP/5. Consistent with the diagnosis of PEL, both CRO-AP/3 and CRO-AP/5 expressed indeterminate (i.e. non-B, non-T) phenotypes although immunogenotypic studies documented their B-cell origin. Both cell lines are devoid of genetic lesions of c-MYC, BCL-2 and p53 as well as gross rearrangements of BCL-6. Detailed histogenetic characterization of these novel PEL cell lines suggests that PEL may derive from a post-germinal centre B cell which has undergone pre-terminal differentiation. The CRO-AP/3 and CRO-AP/5 cell lines may provide a valuable model for clarifying the pathogenesis of PEL. In particular, these cell lines may help understand the relative contribution of HHV-8 and EBV to PEL growth and development and may facilitate the identification of recurrent cytogenetic abnormalities highlighting putative novel cancer related loci relevant to PEL."}