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PubMed:9734661 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 38-104 cell_line denotes EBV-positive and EBV-negative primary effusion lymphoma cell lines
T2 221-240 cell_line denotes lymphoma cell lines
T3 242-250 cell_line denotes CRO-AP/3
T4 255-263 cell_line denotes CRO-AP/5
T5 385-388 cell_line denotes PEL
T6 401-411 cell_line denotes cell lines
T7 466-469 cell_line denotes PEL
T8 476-491 cell_line denotes HHV-8+/EBV- PEL
T9 507-535 cell_line denotes CRO-AP/3 and HHV-8+/EBV+ PEL
T10 551-559 cell_line denotes CRO-AP/5
T11 594-597 cell_line denotes PEL
T12 604-612 cell_line denotes CRO-AP/3
T13 617-625 cell_line denotes CRO-AP/5
T14 731-744 cell_type denotes B-cell origin
T15 751-761 cell_line denotes cell lines
T16 795-800 protein denotes c-MYC
T17 802-807 protein denotes BCL-2
T18 812-815 protein denotes p53
T19 851-856 protein denotes BCL-6
T20 912-926 cell_line denotes PEL cell lines
T21 941-944 cell_line denotes PEL
T22 963-990 cell_line denotes post-germinal centre B cell
T23 1045-1053 cell_line denotes CRO-AP/3
T24 1058-1077 cell_line denotes CRO-AP/5 cell lines
T25 1142-1145 cell_line denotes PEL
T26 1168-1178 cell_line denotes cell lines
T27 1409-1412 cell_line denotes PEL

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-141 Sentence denotes Establishment and characterization of EBV-positive and EBV-negative primary effusion lymphoma cell lines harbouring human herpesvirus type-8.
S2 142-390 Sentence denotes In this study we report on the establishment and characterization of two novel lymphoma cell lines (CRO-AP/3 and CRO-AP/5) which carry infection by human herpesvirus type-8 (HHV-8) and have derived from AIDS-related primary effusion lymphoma (PEL).
S3 391-560 Sentence denotes These two cell lines are representative of different virologic subtypes of PEL, i.e. HHV-8+/EBV- PEL in the case of CRO-AP/3 and HHV-8+/EBV+ PEL in the case of CRO-AP/5.
S4 561-745 Sentence denotes Consistent with the diagnosis of PEL, both CRO-AP/3 and CRO-AP/5 expressed indeterminate (i.e. non-B, non-T) phenotypes although immunogenotypic studies documented their B-cell origin.
S5 746-857 Sentence denotes Both cell lines are devoid of genetic lesions of c-MYC, BCL-2 and p53 as well as gross rearrangements of BCL-6.
S6 858-1040 Sentence denotes Detailed histogenetic characterization of these novel PEL cell lines suggests that PEL may derive from a post-germinal centre B cell which has undergone pre-terminal differentiation.
S7 1041-1146 Sentence denotes The CRO-AP/3 and CRO-AP/5 cell lines may provide a valuable model for clarifying the pathogenesis of PEL.
S8 1147-1413 Sentence denotes In particular, these cell lines may help understand the relative contribution of HHV-8 and EBV to PEL growth and development and may facilitate the identification of recurrent cytogenetic abnormalities highlighting putative novel cancer related loci relevant to PEL.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 116-140 NP denotes human herpesvirus type-8
C2 211-264 NP denotes two novel lymphoma cell lines (CRO-AP/3 and CRO-AP/5)
C3 265-270 NP denotes which
C4 290-322 NP denotes human herpesvirus type-8 (HHV-8)
C5 345-389 NP denotes AIDS-related primary effusion lymphoma (PEL)
C6 391-411 NP denotes These two cell lines
C7 466-469 NP denotes PEL
C8 594-597 NP denotes PEL
C9 599-625 NP denotes both CRO-AP/3 and CRO-AP/5
C10 725-730 NP denotes their
C11 746-761 NP denotes Both cell lines
C12 900-926 NP denotes these novel PEL cell lines
C13 941-944 NP denotes PEL
C14 961-990 NP denotes a post-germinal centre B cell
C15 991-996 NP denotes which
C16 1041-1077 NP denotes The CRO-AP/3 and CRO-AP/5 cell lines
C17 1142-1145 NP denotes PEL
C18 1162-1178 NP denotes these cell lines
C19 1228-1233 NP denotes HHV-8
C20 1409-1412 NP denotes PEL
R1 C3 C2 coref-relat which,two novel lymphoma cell lines (CRO-AP/3 and CRO-AP/5)
R2 C4 C1 coref-ident human herpesvirus type-8 (HHV-8),human herpesvirus type-8
R3 C6 C2 coref-ident These two cell lines,two novel lymphoma cell lines (CRO-AP/3 and CRO-AP/5)
R4 C7 C5 coref-ident PEL,AIDS-related primary effusion lymphoma (PEL)
R5 C8 C7 coref-ident PEL,PEL
R6 C9 C6 coref-ident both CRO-AP/3 and CRO-AP/5,These two cell lines
R7 C10 C9 coref-pron their,both CRO-AP/3 and CRO-AP/5
R8 C11 C9 coref-ident Both cell lines,both CRO-AP/3 and CRO-AP/5
R9 C12 C11 coref-ident these novel PEL cell lines,Both cell lines
R10 C13 C8 coref-ident PEL,PEL
R11 C15 C14 coref-relat which,a post-germinal centre B cell
R12 C16 C12 coref-ident The CRO-AP/3 and CRO-AP/5 cell lines,these novel PEL cell lines
R13 C17 C13 coref-ident PEL,PEL
R14 C18 C16 coref-ident these cell lines,The CRO-AP/3 and CRO-AP/5 cell lines
R15 C19 C4 coref-ident HHV-8,human herpesvirus type-8 (HHV-8)
R16 C20 C17 coref-ident PEL,PEL

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 116-140 virus denotes human herpesvirus type-8
T2 221-240 cell_line denotes lymphoma cell lines
T3 242-250 cell_line denotes CRO-AP/3
T4 255-263 cell_line denotes CRO-AP/5
T5 290-314 virus denotes human herpesvirus type-8
T6 316-321 virus denotes HHV-8
T7 345-383 other_name denotes AIDS-related primary effusion lymphoma
T8 385-388 cell_line denotes PEL
T9 401-411 cell_line denotes cell lines
T10 444-462 virus denotes virologic subtypes
T11 466-469 cell_line denotes PEL
T12 476-481 virus denotes HHV-8
T13 507-515 cell_line denotes CRO-AP/3
T14 520-525 virus denotes HHV-8
T15 551-559 cell_line denotes CRO-AP/5
T16 594-597 cell_line denotes PEL
T17 604-612 cell_line denotes CRO-AP/3
T18 617-625 cell_line denotes CRO-AP/5
T19 690-713 other_name denotes immunogenotypic studies
T20 731-744 cell_type denotes B-cell origin
T21 751-761 cell_line denotes cell lines
T22 795-800 protein_molecule denotes c-MYC
T23 802-807 protein_molecule denotes BCL-2
T24 812-815 protein_molecule denotes p53
T25 851-856 protein_molecule denotes BCL-6
T26 912-926 cell_line denotes PEL cell lines
T27 941-944 cell_line denotes PEL
T28 963-990 cell_line denotes post-germinal centre B cell
T29 1011-1039 other_name denotes pre-terminal differentiation
T30 1045-1053 cell_line denotes CRO-AP/3
T31 1058-1077 cell_line denotes CRO-AP/5 cell lines
T32 1142-1145 cell_line denotes PEL
T33 1168-1178 cell_line denotes cell lines
T34 1228-1233 virus denotes HHV-8
T35 1238-1241 virus denotes EBV
T36 1245-1255 other_name denotes PEL growth
T37 1323-1348 other_name denotes cytogenetic abnormalities
T38 1409-1412 cell_line denotes PEL

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-141 Sentence denotes Establishment and characterization of EBV-positive and EBV-negative primary effusion lymphoma cell lines harbouring human herpesvirus type-8.
TextSentencer_T2 142-390 Sentence denotes In this study we report on the establishment and characterization of two novel lymphoma cell lines (CRO-AP/3 and CRO-AP/5) which carry infection by human herpesvirus type-8 (HHV-8) and have derived from AIDS-related primary effusion lymphoma (PEL).
TextSentencer_T3 391-560 Sentence denotes These two cell lines are representative of different virologic subtypes of PEL, i.e. HHV-8+/EBV- PEL in the case of CRO-AP/3 and HHV-8+/EBV+ PEL in the case of CRO-AP/5.
TextSentencer_T4 561-745 Sentence denotes Consistent with the diagnosis of PEL, both CRO-AP/3 and CRO-AP/5 expressed indeterminate (i.e. non-B, non-T) phenotypes although immunogenotypic studies documented their B-cell origin.
TextSentencer_T5 746-857 Sentence denotes Both cell lines are devoid of genetic lesions of c-MYC, BCL-2 and p53 as well as gross rearrangements of BCL-6.
TextSentencer_T6 858-1040 Sentence denotes Detailed histogenetic characterization of these novel PEL cell lines suggests that PEL may derive from a post-germinal centre B cell which has undergone pre-terminal differentiation.
TextSentencer_T7 1041-1146 Sentence denotes The CRO-AP/3 and CRO-AP/5 cell lines may provide a valuable model for clarifying the pathogenesis of PEL.
TextSentencer_T8 1147-1413 Sentence denotes In particular, these cell lines may help understand the relative contribution of HHV-8 and EBV to PEL growth and development and may facilitate the identification of recurrent cytogenetic abnormalities highlighting putative novel cancer related loci relevant to PEL.
T1 0-141 Sentence denotes Establishment and characterization of EBV-positive and EBV-negative primary effusion lymphoma cell lines harbouring human herpesvirus type-8.
T2 142-390 Sentence denotes In this study we report on the establishment and characterization of two novel lymphoma cell lines (CRO-AP/3 and CRO-AP/5) which carry infection by human herpesvirus type-8 (HHV-8) and have derived from AIDS-related primary effusion lymphoma (PEL).
T3 391-560 Sentence denotes These two cell lines are representative of different virologic subtypes of PEL, i.e. HHV-8+/EBV- PEL in the case of CRO-AP/3 and HHV-8+/EBV+ PEL in the case of CRO-AP/5.
T4 561-745 Sentence denotes Consistent with the diagnosis of PEL, both CRO-AP/3 and CRO-AP/5 expressed indeterminate (i.e. non-B, non-T) phenotypes although immunogenotypic studies documented their B-cell origin.
T5 746-857 Sentence denotes Both cell lines are devoid of genetic lesions of c-MYC, BCL-2 and p53 as well as gross rearrangements of BCL-6.
T6 858-1040 Sentence denotes Detailed histogenetic characterization of these novel PEL cell lines suggests that PEL may derive from a post-germinal centre B cell which has undergone pre-terminal differentiation.
T7 1041-1146 Sentence denotes The CRO-AP/3 and CRO-AP/5 cell lines may provide a valuable model for clarifying the pathogenesis of PEL.
T8 1147-1413 Sentence denotes In particular, these cell lines may help understand the relative contribution of HHV-8 and EBV to PEL growth and development and may facilitate the identification of recurrent cytogenetic abnormalities highlighting putative novel cancer related loci relevant to PEL.

PubCasesHPO

Id Subject Object Predicate Lexical cue
AB1 221-229 HP:0002665 denotes lymphoma
TI1 85-93 HP:0002665 denotes lymphoma
AB2 375-383 HP:0002665 denotes lymphoma

PubCasesORDO

Id Subject Object Predicate Lexical cue
TI1 68-93 ORDO:48686 denotes primary effusion lymphoma
AB1 358-383 ORDO:48686 denotes primary effusion lymphoma
AB2 385-388 ORDO:48686 denotes PEL
AB3 466-469 ORDO:48686 denotes PEL
AB4 488-491 ORDO:48686 denotes PEL
AB5 532-535 ORDO:48686 denotes PEL
AB6 594-597 ORDO:48686 denotes PEL
AB7 912-915 ORDO:48686 denotes PEL
AB8 941-944 ORDO:48686 denotes PEL
AB9 1142-1145 ORDO:48686 denotes PEL
AB10 1245-1248 ORDO:48686 denotes PEL
AB11 1409-1412 ORDO:48686 denotes PEL