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PubMed:9160887 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 20-50 cell_type denotes peripheral blood T-lymphocytes
T2 67-85 protein denotes HTLV-I Tax mutants
T3 130-134 protein denotes Tax1
T4 138-169 protein denotes transcriptional trans-activator
T5 317-347 protein denotes cellular transcription factors
T6 349-357 protein denotes CREB/ATF
T7 359-368 protein denotes NF-kappaB
T8 374-377 protein denotes SRF
T9 384-388 protein denotes Tax1
T10 411-425 DNA denotes cellular genes
T11 529-533 protein denotes Tax1
T12 608-620 protein denotes Tax1 mutants
T13 669-697 cell_type denotes peripheral blood lymphocytes
T14 699-702 cell_type denotes PBL
T15 745-749 cell_type denotes PBLs
T16 782-791 protein denotes NF-kappaB
T17 848-852 protein denotes IL-2
T18 891-903 cell_type denotes CD4+ T-cells

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 67-128 NP denotes HTLV-I Tax mutants with different trans-activating phenotypes
C2 130-134 NP denotes Tax1
C4 173-220 NP denotes the Human T-cell leukemia virus type I (HTLV-I)
C3 136-220 NP denotes a transcriptional trans-activator of the Human T-cell leukemia virus type I (HTLV-I)
C5 302-347 NP denotes three distinct cellular transcription factors
C6 349-377 NP denotes CREB/ATF, NF-kappaB, and SRF
C7 466-487 NP denotes T-cell transformation
C8 491-497 NP denotes HTLV-I
C9 571-592 NP denotes T-cell transformation
C10 608-663 NP denotes Tax1 mutants with different trans-activating phenotypes
C11 669-703 NP denotes peripheral blood lymphocytes (PBL)
C12 739-749 NP denotes these PBLs
C13 867-903 NP denotes the clonal expansion of CD4+ T-cells
C14 905-910 NP denotes which
R1 C3 C2 coref-appos a transcriptional trans-activator of the Human T-cell leukemia virus type I (HTLV-I),Tax1
R2 C6 C5 coref-appos "CREB/ATF, NF-kappaB, and SRF",three distinct cellular transcription factors
R3 C8 C4 coref-ident HTLV-I,the Human T-cell leukemia virus type I (HTLV-I)
R4 C9 C7 coref-ident T-cell transformation,T-cell transformation
R5 C10 C1 coref-ident Tax1 mutants with different trans-activating phenotypes,HTLV-I Tax mutants with different trans-activating phenotypes
R6 C12 C11 coref-ident these PBLs,peripheral blood lymphocytes (PBL)
R7 C14 C13 coref-relat which,the clonal expansion of CD4+ T-cells

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-129 Sentence denotes Characterization of peripheral blood T-lymphocytes transduced with HTLV-I Tax mutants with different trans-activating phenotypes.
S2 130-378 Sentence denotes Tax1, a transcriptional trans-activator of the Human T-cell leukemia virus type I (HTLV-I), induces the expression of many cellular genes through interaction with at least three distinct cellular transcription factors; CREB/ATF, NF-kappaB, and SRF.
S3 379-498 Sentence denotes This Tax1-induced activation of cellular genes is considered to be a critical event in T-cell transformation by HTLV-I.
S4 499-726 Sentence denotes To elucidate the role of each Tax1-inducible transcriptional pathway in T-cell transformation, we introduced Tax1 mutants with different trans-activating phenotypes into peripheral blood lymphocytes (PBL) by retroviral vectors.
S5 727-853 Sentence denotes Analysis of these PBLs revealed that activation of the NF-kappaB pathway is sufficient to promote the growth response to IL-2.
S6 854-1020 Sentence denotes However, for the clonal expansion of CD4+ T-cells, which is a characteristic result of HTLV-I infection, activation of the CREB/ATF and SRF pathways is also required.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 20-50 cell_type denotes peripheral blood T-lymphocytes
T2 67-73 virus denotes HTLV-I
T3 101-128 other_name denotes trans-activating phenotypes
T4 130-134 protein_molecule denotes Tax1
T5 138-169 protein_family_or_group denotes transcriptional trans-activator
T6 177-211 virus denotes Human T-cell leukemia virus type I
T7 213-219 virus denotes HTLV-I
T8 317-325 protein_family_or_group denotes cellular
T9 326-347 protein_family_or_group denotes transcription factors
T10 349-357 protein_molecule denotes CREB/ATF
T11 359-368 protein_complex denotes NF-kappaB
T12 374-377 protein_molecule denotes SRF
T13 384-388 protein_molecule denotes Tax1
T14 411-425 DNA_family_or_group denotes cellular genes
T15 466-487 other_name denotes T-cell transformation
T16 491-497 virus denotes HTLV-I
T17 529-533 protein_molecule denotes Tax1
T18 571-592 other_name denotes T-cell transformation
T19 608-612 protein_molecule denotes Tax1
T20 636-663 other_name denotes trans-activating phenotypes
T21 669-685 cell_type denotes peripheral blood
T22 686-697 cell_type denotes lymphocytes
T23 699-702 cell_type denotes PBL
T24 745-749 cell_type denotes PBLs
T25 782-791 protein_complex denotes NF-kappaB
T26 848-852 protein_molecule denotes IL-2
T27 891-903 cell_type denotes CD4+ T-cells
T28 941-947 virus denotes HTLV-I