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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 3-28 DNA denotes enhancer-blocking element
T2 37-66 DNA denotes alpha and delta gene segments
T3 78-117 DNA denotes human T cell receptor alpha/delta locus
T4 119-146 protein denotes T cell receptor (TCR) alpha
T5 278-303 DNA denotes enhancer-blocking element
T6 305-311 DNA denotes BEAD-1
T7 326-347 DNA denotes element alpha/delta 1
T8 368-381 DNA denotes 2.0-kb region
T9 388-411 DNA denotes TCR delta gene segments
T10 422-453 DNA denotes TCR alpha joining gene segments
T11 473-479 DNA denotes BEAD-1
T12 507-525 DNA denotes TCR delta enhancer
T13 527-533 DNA denotes Edelta
T14 592-622 DNA denotes chromatin-integrated construct
T15 640-646 DNA denotes BEAD-1
T16 690-711 DNA denotes TCR alpha/delta locus
T17 726-744 DNA denotes regulatory domains
T18 759-765 DNA denotes Edelta
T19 774-792 DNA denotes TCR alpha enhancer
T20 815-821 DNA denotes Edelta
T21 839-848 DNA denotes chromatin
T22 856-865 DNA denotes TCR alpha

genia-medco-coref

Id Subject Object Predicate Lexical cue
C3 74-117 NP denotes the human T cell receptor alpha/delta locus
C2 37-117 NP denotes alpha and delta gene segments within the human T cell receptor alpha/delta locus
C1 0-117 NP denotes An enhancer-blocking element between alpha and delta gene segments within the human T cell receptor alpha/delta locus
C4 119-170 NP denotes T cell receptor (TCR) alpha and delta gene segments
C5 192-214 NP denotes a single genetic locus
C6 275-348 NP denotes An enhancer-blocking element (BEAD-1, for blocking element alpha/delta 1)
C7 422-453 NP denotes TCR alpha joining gene segments
C8 461-471 NP denotes this locus
C9 473-479 NP denotes BEAD-1
C10 503-534 NP denotes the TCR delta enhancer (Edelta)
C11 640-646 NP denotes BEAD-1
C12 660-670 NP denotes a boundary
C13 671-675 NP denotes that
C14 686-711 NP denotes the TCR alpha/delta locus
C15 759-765 NP denotes Edelta
C16 803-805 NP denotes it
C17 815-821 NP denotes Edelta
C18 852-887 NP denotes the TCR alpha joining gene segments
R1 C4 C2 coref-ident T cell receptor (TCR) alpha and delta gene segments,alpha and delta gene segments within the human T cell receptor alpha/delta locus
R2 C5 C3 coref-ident a single genetic locus,the human T cell receptor alpha/delta locus
R3 C6 C1 coref-ident "An enhancer-blocking element (BEAD-1, for blocking element alpha/delta 1)",An enhancer-blocking element between alpha and delta gene segments within the human T cell receptor alpha/delta locus
R4 C8 C5 coref-ident this locus,a single genetic locus
R5 C9 C6 coref-ident BEAD-1,"An enhancer-blocking element (BEAD-1, for blocking element alpha/delta 1)"
R6 C11 C9 coref-ident BEAD-1,BEAD-1
R7 C13 C12 coref-relat that,a boundary
R8 C14 C8 coref-ident the TCR alpha/delta locus,this locus
R9 C15 C10 coref-ident Edelta,the TCR delta enhancer (Edelta)
R10 C16 C11 coref-pron it,BEAD-1
R11 C17 C15 coref-ident Edelta,Edelta
R12 C18 C7 coref-ident the TCR alpha joining gene segments,TCR alpha joining gene segments

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-118 Sentence denotes An enhancer-blocking element between alpha and delta gene segments within the human T cell receptor alpha/delta locus.
S2 119-274 Sentence denotes T cell receptor (TCR) alpha and delta gene segments are organized within a single genetic locus but are differentially regulated during T cell development.
S3 275-472 Sentence denotes An enhancer-blocking element (BEAD-1, for blocking element alpha/delta 1) was localized to a 2.0-kb region 3' of TCR delta gene segments and 5' of TCR alpha joining gene segments within this locus.
S4 473-623 Sentence denotes BEAD-1 blocked the ability of the TCR delta enhancer (Edelta) to activate a promoter when located between the two in a chromatin-integrated construct.
S5 624-950 Sentence denotes We propose that BEAD-1 functions as a boundary that separates the TCR alpha/delta locus into distinct regulatory domains controlled by Edelta and the TCR alpha enhancer, and that it prevents Edelta from opening the chromatin of the TCR alpha joining gene segments for VDJ recombination at an early stage of T cell development.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 3-28 DNA_domain_or_region denotes enhancer-blocking element
T2 78-117 DNA_domain_or_region denotes human T cell receptor alpha/delta locus
T3 119-146 protein_molecule denotes T cell receptor (TCR) alpha
T4 255-273 other_name denotes T cell development
T5 278-303 DNA_domain_or_region denotes enhancer-blocking element
T6 305-311 DNA_domain_or_region denotes BEAD-1
T7 326-347 DNA_domain_or_region denotes element alpha/delta 1
T8 368-381 DNA_domain_or_region denotes 2.0-kb region
T9 388-411 DNA_domain_or_region denotes TCR delta gene segments
T10 422-453 DNA_domain_or_region denotes TCR alpha joining gene segments
T11 473-479 DNA_domain_or_region denotes BEAD-1
T12 507-525 DNA_domain_or_region denotes TCR delta enhancer
T13 527-533 DNA_domain_or_region denotes Edelta
T14 592-622 DNA_family_or_group denotes chromatin-integrated construct
T15 640-646 DNA_domain_or_region denotes BEAD-1
T16 690-711 DNA_domain_or_region denotes TCR alpha/delta locus
T17 726-744 DNA_domain_or_region denotes regulatory domains
T18 759-765 DNA_domain_or_region denotes Edelta
T19 774-792 DNA_domain_or_region denotes TCR alpha enhancer
T20 815-821 DNA_domain_or_region denotes Edelta
T21 839-848 DNA_family_or_group denotes chromatin
T22 856-865 DNA_domain_or_region denotes TCR alpha
T23 892-909 other_name denotes VDJ recombination
T24 931-949 other_name denotes T cell development