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relna

Id Subject Object Predicate Lexical cue
T1 0-3 Protein denotes ALY
T2 40-45 DNA denotes LEF-1
T3 50-55 DNA denotes AML-1
T4 73-81 Protein denotes TCRalpha
T5 101-106 DNA denotes LEF-1
T6 199-208 Protein denotes TCR alpha
T7 328-333 DNA denotes LEF-1
T8 641-644 Protein denotes ALY
T9 654-659 DNA denotes LEF-1
T10 681-684 Protein denotes ALY
T11 790-795 DNA denotes LEF-1
T12 800-805 DNA denotes AML-1
T13 807-817 DNA denotes CBF alpha2
T14 819-833 DNA denotes PEBP2 alpha(B)
T15 918-921 Protein denotes ALY
T16 955-960 DNA denotes LEF-1
T17 997-1000 Protein denotes ALY
T18 1139-1142 Protein denotes ALY
T19 1246-1251 DNA denotes LEF-1
T20 1253-1256 Protein denotes ALY
T21 1426-1429 Protein denotes ALY
R0 T1 T2 linked ALY,LEF-1
R1 T1 T3 linked ALY,AML-1
R2 T5 T6 linked LEF-1,TCR alpha
R3 T8 T9 linked ALY,LEF-1

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-3 protein denotes ALY
T2 7-36 protein denotes context-dependent coactivator
T3 40-45 protein denotes LEF-1
T4 50-55 protein denotes AML-1
T5 73-90 DNA denotes TCRalpha enhancer
T6 101-106 protein denotes LEF-1
T7 176-218 DNA denotes T-cell receptor alpha (TCR alpha) enhancer
T8 251-268 protein denotes multiple proteins
T9 289-310 protein denotes nucleoprotein complex
T10 328-333 protein denotes LEF-1
T11 364-374 protein denotes HMG domain
T12 429-446 protein denotes activation domain
T13 513-538 protein denotes enhancer-binding proteins
T14 593-629 protein denotes context-dependent activation domains
T15 641-644 protein denotes ALY
T16 654-679 protein denotes LEF-1-interacting protein
T17 681-684 protein denotes ALY
T18 768-786 protein denotes activation domains
T19 790-795 protein denotes LEF-1
T20 800-805 protein denotes AML-1
T21 807-817 protein denotes CBF alpha2
T22 819-830 protein denotes PEBP2 alpha
T23 877-903 protein denotes TCR alpha enhancer complex
T24 918-921 protein denotes ALY
T25 955-960 protein denotes LEF-1
T26 965-977 protein denotes AML proteins
T27 997-1000 protein denotes ALY
T28 1032-1058 protein denotes TCR alpha enhancer complex
T29 1076-1110 cell_line denotes transfected nonlymphoid HeLa cells
T30 1139-1142 protein denotes ALY
T31 1195-1213 DNA denotes TCR alpha enhancer
T32 1226-1233 cell_type denotes T cells
T33 1246-1251 protein denotes LEF-1
T34 1253-1256 protein denotes ALY
T35 1307-1325 DNA denotes TCR alpha enhancer
T36 1377-1408 protein denotes heterologous DNA-binding domain
T37 1426-1429 protein denotes ALY
T38 1532-1549 protein denotes multiple proteins
T39 1557-1583 protein denotes TCR alpha enhancer complex

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-3 NP denotes ALY
C3 40-45 NP denotes LEF-1
C4 50-55 NP denotes AML-1
C2 5-55 NP denotes a context-dependent coactivator of LEF-1 and AML-1
C5 101-106 NP denotes LEF-1
C6 110-132 NP denotes a transcription factor
C7 133-137 NP denotes that
C8 172-218 NP denotes the T-cell receptor alpha (TCR alpha) enhancer
C9 328-333 NP denotes LEF-1
C10 360-374 NP denotes the HMG domain
C11 375-379 NP denotes that
C12 426-446 NP denotes an activation domain
C13 447-451 NP denotes that
C14 641-644 NP denotes ALY
C15 646-679 NP denotes a novel LEF-1-interacting protein
C16 681-684 NP denotes ALY
C17 688-729 NP denotes a ubiquitously expressed, nuclear protein
C18 730-734 NP denotes that
C19 790-795 NP denotes LEF-1
C20 800-805 NP denotes AML-1
C21 835-840 NP denotes which
C22 873-903 NP denotes the TCR alpha enhancer complex
C23 918-921 NP denotes ALY
C24 997-1000 NP denotes ALY
C25 1028-1058 NP denotes the TCR alpha enhancer complex
C26 1139-1142 NP denotes ALY
C27 1246-1251 NP denotes LEF-1
C28 1253-1256 NP denotes ALY
C29 1303-1325 NP denotes the TCR alpha enhancer
C30 1426-1429 NP denotes ALY
C31 1553-1583 NP denotes the TCR alpha enhancer complex
R1 C2 C1 coref-appos a context-dependent coactivator of LEF-1 and AML-1,ALY
R2 C5 C3 coref-ident LEF-1,LEF-1
R3 C7 C6 coref-relat that,a transcription factor
R4 C9 C5 coref-ident LEF-1,LEF-1
R5 C11 C10 coref-relat that,the HMG domain
R6 C13 C12 coref-relat that,an activation domain
R7 C14 C1 coref-ident ALY,ALY
R8 C15 C14 coref-appos a novel LEF-1-interacting protein,ALY
R9 C16 C14 coref-ident ALY,ALY
R10 C18 C17 coref-relat that,"a ubiquitously expressed, nuclear protein"
R11 C19 C9 coref-ident LEF-1,LEF-1
R12 C20 C4 coref-ident AML-1,AML-1
R13 C21 C20 coref-relat which,AML-1
R14 C23 C16 coref-ident ALY,ALY
R15 C24 C23 coref-ident ALY,ALY
R16 C25 C22 coref-ident the TCR alpha enhancer complex,the TCR alpha enhancer complex
R17 C26 C24 coref-ident ALY,ALY
R18 C27 C19 coref-ident LEF-1,LEF-1
R19 C28 C26 coref-ident ALY,ALY
R20 C29 C8 coref-ident the TCR alpha enhancer,the T-cell receptor alpha (TCR alpha) enhancer
R21 C30 C28 coref-ident ALY,ALY
R22 C31 C25 coref-ident the TCR alpha enhancer complex,the TCR alpha enhancer complex

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-100 Sentence denotes ALY, a context-dependent coactivator of LEF-1 and AML-1, is required for TCRalpha enhancer function.
S2 101-311 Sentence denotes LEF-1 is a transcription factor that participates in the regulation of the T-cell receptor alpha (TCR alpha) enhancer by facilitating the assembly of multiple proteins into a higher order nucleoprotein complex.
S3 312-539 Sentence denotes The function of LEF-1 is dependent, in part, on the HMG domain that induces a sharp bend in the DNA helix, and on an activation domain that stimulates transcription only in a specific context of other enhancer-binding proteins.
S4 540-680 Sentence denotes With the aim of gaining insight into the function of context-dependent activation domains, we cloned ALY, a novel LEF-1-interacting protein.
S5 681-904 Sentence denotes ALY is a ubiquitously expressed, nuclear protein that specifically associates with the activation domains of LEF-1 and AML-1 (CBF alpha2, PEBP2 alpha(B), which is another protein component of the TCR alpha enhancer complex.
S6 905-978 Sentence denotes In addition, ALY can increase DNA binding by both LEF-1 and AML proteins.
S7 979-1234 Sentence denotes Overexpression of ALY stimulates the activity of the TCR alpha enhancer complex reconstituted in transfected nonlymphoid HeLa cells, whereas down-regulation of ALY by anti-sense oligonucleotides virtually eliminates TCR alpha enhancer activity in T cells.
S8 1235-1409 Sentence denotes Similar to LEF-1, ALY can stimulate transcription in the context of the TCR alpha enhancer but apparently not when tethered to DNA through an heterologous DNA-binding domain.
S9 1410-1584 Sentence denotes We propose that ALY mediates context-dependent transcriptional activation by facilitating the functional collaboration of multiple proteins in the TCR alpha enhancer complex.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-3 protein_molecule denotes ALY
T2 7-36 protein_family_or_group denotes context-dependent coactivator
T3 40-45 protein_molecule denotes LEF-1
T4 50-55 protein_molecule denotes AML-1
T5 73-90 DNA_domain_or_region denotes TCRalpha enhancer
T6 101-106 protein_molecule denotes LEF-1
T7 176-218 DNA_domain_or_region denotes T-cell receptor alpha (TCR alpha) enhancer
T8 251-268 protein_family_or_group denotes multiple proteins
T9 289-310 protein_complex denotes nucleoprotein complex
T10 328-333 protein_molecule denotes LEF-1
T11 364-374 protein_domain_or_region denotes HMG domain
T12 429-446 protein_domain_or_region denotes activation domain
T13 513-538 protein_family_or_group denotes enhancer-binding proteins
T14 593-629 protein_domain_or_region denotes context-dependent activation domains
T15 641-644 protein_molecule denotes ALY
T16 654-659 protein_family_or_group denotes LEF-1
T17 681-684 protein_molecule denotes ALY
T18 768-786 protein_domain_or_region denotes activation domains
T19 790-795 protein_molecule denotes LEF-1
T20 800-805 protein_molecule denotes AML-1
T21 807-817 protein_molecule denotes CBF alpha2
T22 819-830 protein_molecule denotes PEBP2 alpha
T23 877-903 protein_complex denotes TCR alpha enhancer complex
T24 918-921 protein_molecule denotes ALY
T25 955-960 protein_molecule denotes LEF-1
T26 965-977 protein_family_or_group denotes AML proteins
T27 997-1000 protein_molecule denotes ALY
T28 1032-1058 protein_complex denotes TCR alpha enhancer complex
T29 1076-1110 cell_line denotes transfected nonlymphoid HeLa cells
T30 1139-1142 protein_molecule denotes ALY
T31 1195-1213 DNA_domain_or_region denotes TCR alpha enhancer
T32 1226-1233 cell_type denotes T cells
T33 1246-1251 protein_molecule denotes LEF-1
T34 1253-1256 protein_molecule denotes ALY
T35 1307-1325 DNA_domain_or_region denotes TCR alpha enhancer
T36 1377-1408 protein_domain_or_region denotes heterologous DNA-binding domain
T37 1426-1429 protein_molecule denotes ALY
T38 1439-1483 other_name denotes context-dependent transcriptional activation
T39 1532-1549 protein_family_or_group denotes multiple proteins
T40 1557-1575 DNA_domain_or_region denotes TCR alpha enhancer