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sentences

Id Subject Object Predicate Lexical cue
T1 0-106 Sentence denotes The proximal regulatory element of the interferon-gamma promoter mediates selective expression in T cells.
T2 107-258 Sentence denotes Interferon-gamma (IFN-gamma) is produced by natural killer cells and certain subsets of T cells, but the basis for its selective expression is unknown.
T3 259-443 Sentence denotes Within the region between -108 and -40 base pairs of the IFN-gamma promoter are two conserved and essential regulatory elements, which confer activation-specific expression in T cells.
T4 444-598 Sentence denotes This report describes studies indicating that the most proximal of these two regulatory elements is an important determinant of its restricted expression.
T5 599-728 Sentence denotes The proximal element is a composite site that binds members of the CREB/ATF, AP-1, and octamer families of transcription factors.
T6 729-832 Sentence denotes Jun is essential for activation-induced transcription and binds preferably as a heterodimer with ATF-2.
T7 833-901 Sentence denotes In contrast, CREB appears to dampen transcription from this element.
T8 902-1089 Sentence denotes The CpG dinucleotide in this element is selectively methylated in Th2 T cells and other cells that do not express IFN-gamma, and methylation markedly reduces transcription factor binding.
T9 1090-1281 Sentence denotes As a target for DNA methylation and for binding of transcription factors that mediate or impede transcription, this element appears to play a central role in controlling IFN-gamma expression.
T1 0-106 Sentence denotes The proximal regulatory element of the interferon-gamma promoter mediates selective expression in T cells.
T2 107-258 Sentence denotes Interferon-gamma (IFN-gamma) is produced by natural killer cells and certain subsets of T cells, but the basis for its selective expression is unknown.
T3 259-443 Sentence denotes Within the region between -108 and -40 base pairs of the IFN-gamma promoter are two conserved and essential regulatory elements, which confer activation-specific expression in T cells.
T4 444-598 Sentence denotes This report describes studies indicating that the most proximal of these two regulatory elements is an important determinant of its restricted expression.
T5 599-728 Sentence denotes The proximal element is a composite site that binds members of the CREB/ATF, AP-1, and octamer families of transcription factors.
T6 729-832 Sentence denotes Jun is essential for activation-induced transcription and binds preferably as a heterodimer with ATF-2.
T7 833-901 Sentence denotes In contrast, CREB appears to dampen transcription from this element.
T8 902-1089 Sentence denotes The CpG dinucleotide in this element is selectively methylated in Th2 T cells and other cells that do not express IFN-gamma, and methylation markedly reduces transcription factor binding.
T9 1090-1281 Sentence denotes As a target for DNA methylation and for binding of transcription factors that mediate or impede transcription, this element appears to play a central role in controlling IFN-gamma expression.

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 4-12 http://purl.obolibrary.org/obo/MAT_0000491 denotes proximal
T2 499-507 http://purl.obolibrary.org/obo/MAT_0000491 denotes proximal
T3 603-611 http://purl.obolibrary.org/obo/MAT_0000491 denotes proximal

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 39-64 DNA denotes interferon-gamma promoter
T2 98-105 cell_type denotes T cells
T3 107-123 protein denotes Interferon-gamma
T4 125-134 protein denotes IFN-gamma
T5 151-171 cell_type denotes natural killer cells
T6 195-202 cell_type denotes T cells
T7 316-325 protein denotes IFN-gamma
T8 367-386 DNA denotes regulatory elements
T9 435-442 cell_type denotes T cells
T10 521-540 DNA denotes regulatory elements
T11 666-674 protein denotes CREB/ATF
T12 676-680 protein denotes AP-1
T13 686-702 protein denotes octamer families
T14 706-727 protein denotes transcription factors
T15 729-732 protein denotes Jun
T16 826-831 protein denotes ATF-2
T17 846-850 protein denotes CREB
T18 931-938 DNA denotes element
T19 968-979 cell_type denotes Th2 T cells
T20 1016-1025 protein denotes IFN-gamma
T21 1060-1080 protein denotes transcription factor
T22 1141-1162 protein denotes transcription factors
T23 1260-1269 protein denotes IFN-gamma

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-106 Sentence denotes The proximal regulatory element of the interferon-gamma promoter mediates selective expression in T cells.
S2 107-258 Sentence denotes Interferon-gamma (IFN-gamma) is produced by natural killer cells and certain subsets of T cells, but the basis for its selective expression is unknown.
S3 259-443 Sentence denotes Within the region between -108 and -40 base pairs of the IFN-gamma promoter are two conserved and essential regulatory elements, which confer activation-specific expression in T cells.
S4 444-598 Sentence denotes This report describes studies indicating that the most proximal of these two regulatory elements is an important determinant of its restricted expression.
S5 599-728 Sentence denotes The proximal element is a composite site that binds members of the CREB/ATF, AP-1, and octamer families of transcription factors.
S6 729-832 Sentence denotes Jun is essential for activation-induced transcription and binds preferably as a heterodimer with ATF-2.
S7 833-901 Sentence denotes In contrast, CREB appears to dampen transcription from this element.
S8 902-1089 Sentence denotes The CpG dinucleotide in this element is selectively methylated in Th2 T cells and other cells that do not express IFN-gamma, and methylation markedly reduces transcription factor binding.
S9 1090-1281 Sentence denotes As a target for DNA methylation and for binding of transcription factors that mediate or impede transcription, this element appears to play a central role in controlling IFN-gamma expression.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C5 35-64 NP denotes the interferon-gamma promoter
C2 98-105 NP denotes T cells
C1 107-135 NP denotes Interferon-gamma (IFN-gamma)
C3 195-202 NP denotes T cells
C4 222-225 NP denotes its
C6 312-334 NP denotes the IFN-gamma promoter
C7 339-386 NP denotes two conserved and essential regulatory elements
C8 388-393 NP denotes which
C9 435-442 NP denotes T cells
C11 511-540 NP denotes these two regulatory elements
C13 490-540 NP denotes the most proximal of these two regulatory elements
C12 572-575 NP denotes its
C14 599-619 NP denotes The proximal element
C15 623-639 NP denotes a composite site
C16 640-644 NP denotes that
C17 888-900 NP denotes this element
C18 926-938 NP denotes this element
C19 984-995 NP denotes other cells
C20 996-1000 NP denotes that
C21 1016-1025 NP denotes IFN-gamma
C22 1141-1162 NP denotes transcription factors
C23 1163-1167 NP denotes that
C24 1201-1213 NP denotes this element
R1 C3 C2 coref-ident T cells,T cells
R2 C4 C1 coref-pron its,Interferon-gamma (IFN-gamma)
R3 C6 C5 coref-ident the IFN-gamma promoter,the interferon-gamma promoter
R4 C8 C7 coref-relat which,two conserved and essential regulatory elements
R5 C9 C3 coref-ident T cells,T cells
R6 C11 C7 coref-ident these two regulatory elements,two conserved and essential regulatory elements
R7 C12 C13 coref-pron its,the most proximal of these two regulatory elements
R8 C14 C13 coref-ident The proximal element,the most proximal of these two regulatory elements
R9 C16 C15 coref-relat that,a composite site
R10 C17 C14 coref-ident this element,The proximal element
R11 C18 C17 coref-ident this element,this element
R12 C20 C19 coref-relat that,other cells
R13 C21 C1 coref-ident IFN-gamma,Interferon-gamma (IFN-gamma)
R14 C23 C22 coref-relat that,transcription factors
R15 C24 C18 coref-ident this element,this element

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 39-55 protein_molecule denotes interferon-gamma
T2 98-105 cell_type denotes T cells
T3 107-123 protein_molecule denotes Interferon-gamma
T4 125-134 protein_molecule denotes IFN-gamma
T5 151-171 cell_type denotes natural killer cells
T6 195-202 cell_type denotes T cells
T7 316-325 protein_molecule denotes IFN-gamma
T8 367-386 DNA_family_or_group denotes regulatory elements
T9 435-442 cell_type denotes T cells
T10 521-540 DNA_family_or_group denotes regulatory elements
T11 576-597 other_name denotes restricted expression
T12 666-674 protein_family_or_group denotes CREB/ATF
T13 676-680 protein_family_or_group denotes AP-1
T14 686-702 protein_family_or_group denotes octamer families
T15 706-727 protein_family_or_group denotes transcription factors
T16 729-732 protein_family_or_group denotes Jun
T17 750-782 other_name denotes activation-induced transcription
T18 826-831 protein_molecule denotes ATF-2
T19 846-850 protein_family_or_group denotes CREB
T20 906-922 nucleotide denotes CpG dinucleotide
T21 931-938 DNA_domain_or_region denotes element
T22 968-979 cell_type denotes Th2 T cells
T23 1016-1025 protein_molecule denotes IFN-gamma
T24 1060-1080 protein_family_or_group denotes transcription factor
T25 1106-1121 other_name denotes DNA methylation
T26 1141-1162 protein_family_or_group denotes transcription factors
T27 1260-1269 protein_molecule denotes IFN-gamma

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 4-12 Body_part denotes proximal http://purl.obolibrary.org/obo/MAT_0000491
T2 499-507 Body_part denotes proximal http://purl.obolibrary.org/obo/MAT_0000491
T3 603-611 Body_part denotes proximal http://purl.obolibrary.org/obo/MAT_0000491

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 98-105 Cell denotes T cells http://purl.obolibrary.org/obo/CL:0000084
T2 151-171 Cell denotes natural killer cells http://purl.obolibrary.org/obo/CL:0000623
T3 195-202 Cell denotes T cells http://purl.obolibrary.org/obo/CL:0000084
T4 435-442 Cell denotes T cells http://purl.obolibrary.org/obo/CL:0000084
T5 968-979 Cell denotes Th2 T cells http://purl.obolibrary.org/obo/CL:0000546