PubMed:8720077
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/8720077","sourcedb":"PubMed","sourceid":"8720077","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/8720077","text":"Glycan structure of a heptose-containing S-layer glycoprotein of Bacillus thermoaerophilus.\nThe characterization of the S-layer glycoprotein of Bacillus thermoaerophilus revealed unexpected novelties. The isolation and purification procedure had to be changed due to complete solubility in aqueous buffers of the constituting S-layer protomers. Upon degradation of the S-layer glycoprotein by pronase and purification of the products by gel filtration, ion-exchange chromatography, chromatofocusing and HPLC, one representative glycopeptide fraction was selected for further characterization. From the combined evidence of composition analysis, chemical degradation, NMR spectroscopy experiments and comparison with synthesized model substance, we propose the following repeating unit structure of the glycan chain: --\u003e4)-alpha-L-Rhap-(1--\u003e3)-beta-D-glycero-D-manno-Hepp-(1--\u003e This is the first description of heptose residues occurring as a constituent of S-layer glycoproteins of gram-positive eubacteria.","tracks":[{"project":"uniprot-human","denotations":[{"id":"T1","span":{"begin":819,"end":827},"obj":"http://www.uniprot.org/uniprot/P78318"}],"attributes":[{"subj":"T1","pred":"source","obj":"uniprot-human"}]},{"project":"GlycoBiology-FMA","denotations":[{"id":"_T1","span":{"begin":49,"end":61},"obj":"FMAID:62925"},{"id":"_T2","span":{"begin":49,"end":61},"obj":"FMAID:167256"},{"id":"_T3","span":{"begin":128,"end":140},"obj":"FMAID:62925"},{"id":"_T4","span":{"begin":128,"end":140},"obj":"FMAID:167256"},{"id":"_T5","span":{"begin":377,"end":389},"obj":"FMAID:62925"},{"id":"_T6","span":{"begin":377,"end":389},"obj":"FMAID:167256"},{"id":"_T7","span":{"begin":528,"end":540},"obj":"FMAID:196778"},{"id":"_T8","span":{"begin":528,"end":540},"obj":"FMAID:82784"},{"id":"_T9","span":{"begin":623,"end":634},"obj":"FMAID:50603"},{"id":"_T10","span":{"begin":623,"end":634},"obj":"FMAID:146309"},{"id":"_T11","span":{"begin":860,"end":865},"obj":"FMAID:226916"},{"id":"_T12","span":{"begin":965,"end":978},"obj":"FMAID:167256"},{"id":"_T13","span":{"begin":965,"end":978},"obj":"FMAID:62925"}],"namespaces":[{"prefix":"FMAID","uri":"http://purl.org/sig/ont/fma/fma"}],"attributes":[{"subj":"_T1","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T2","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T3","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T4","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T5","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T6","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T7","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T8","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T9","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T10","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T11","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T12","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T13","pred":"source","obj":"GlycoBiology-FMA"}]},{"project":"GlycoBiology-NCBITAXON","denotations":[{"id":"T1","span":{"begin":65,"end":73},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/55087"},{"id":"T2","span":{"begin":65,"end":90},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/1245522"},{"id":"T3","span":{"begin":65,"end":90},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/33937"},{"id":"T4","span":{"begin":74,"end":90},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/1100665"},{"id":"T5","span":{"begin":144,"end":152},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/55087"},{"id":"T6","span":{"begin":144,"end":169},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/33937"},{"id":"T7","span":{"begin":144,"end":169},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/1245522"},{"id":"T8","span":{"begin":153,"end":169},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/1100665"},{"id":"T9","span":{"begin":843,"end":847},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/3554"},{"id":"T10","span":{"begin":843,"end":847},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/158455"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T2","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T3","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T4","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T5","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T6","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T7","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T8","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T9","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T10","pred":"source","obj":"GlycoBiology-NCBITAXON"}]},{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":91},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":92,"end":200},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":201,"end":344},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":345,"end":592},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":593,"end":1007},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":91},"obj":"Sentence"},{"id":"T2","span":{"begin":92,"end":200},"obj":"Sentence"},{"id":"T3","span":{"begin":201,"end":344},"obj":"Sentence"},{"id":"T4","span":{"begin":345,"end":592},"obj":"Sentence"},{"id":"T5","span":{"begin":593,"end":1007},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":91},"obj":"Sentence"},{"id":"T2","span":{"begin":92,"end":200},"obj":"Sentence"},{"id":"T3","span":{"begin":201,"end":344},"obj":"Sentence"},{"id":"T4","span":{"begin":345,"end":592},"obj":"Sentence"},{"id":"T5","span":{"begin":593,"end":1007},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T1","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T2","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T3","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T4","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T5","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"}]},{"project":"GO-BP","denotations":[{"id":"T1","span":{"begin":350,"end":361},"obj":"http://purl.obolibrary.org/obo/GO_0009056"},{"id":"T2","span":{"begin":654,"end":665},"obj":"http://purl.obolibrary.org/obo/GO_0009056"},{"id":"T3","span":{"begin":457,"end":465},"obj":"http://purl.obolibrary.org/obo/GO_0015297"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-BP"},{"subj":"T2","pred":"source","obj":"GO-BP"},{"subj":"T3","pred":"source","obj":"GO-BP"}]},{"project":"GO-CC","denotations":[{"id":"T1","span":{"begin":41,"end":48},"obj":"http://purl.obolibrary.org/obo/GO_0030115"},{"id":"T2","span":{"begin":120,"end":127},"obj":"http://purl.obolibrary.org/obo/GO_0030115"},{"id":"T3","span":{"begin":326,"end":333},"obj":"http://purl.obolibrary.org/obo/GO_0030115"},{"id":"T4","span":{"begin":369,"end":376},"obj":"http://purl.obolibrary.org/obo/GO_0030115"},{"id":"T5","span":{"begin":957,"end":964},"obj":"http://purl.obolibrary.org/obo/GO_0030115"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-CC"},{"subj":"T2","pred":"source","obj":"GO-CC"},{"subj":"T3","pred":"source","obj":"GO-CC"},{"subj":"T4","pred":"source","obj":"GO-CC"},{"subj":"T5","pred":"source","obj":"GO-CC"}]},{"project":"EDAM-topics","denotations":[{"id":"T1","span":{"begin":667,"end":670},"obj":"http://edamontology.org/topic_0593"},{"id":"T2","span":{"begin":667,"end":683},"obj":"http://edamontology.org/topic_0593"},{"id":"T3","span":{"begin":671,"end":683},"obj":"http://edamontology.org/topic_0593"}],"attributes":[{"subj":"T1","pred":"source","obj":"EDAM-topics"},{"subj":"T2","pred":"source","obj":"EDAM-topics"},{"subj":"T3","pred":"source","obj":"EDAM-topics"}]},{"project":"EDAM-DFO","denotations":[{"id":"T1","span":{"begin":7,"end":16},"obj":"http://edamontology.org/data_0883"},{"id":"T2","span":{"begin":635,"end":643},"obj":"http://edamontology.org/operation_2945"},{"id":"T3","span":{"begin":700,"end":710},"obj":"http://edamontology.org/operation_2424"},{"id":"T4","span":{"begin":785,"end":794},"obj":"http://edamontology.org/data_0883"},{"id":"T5","span":{"begin":918,"end":926},"obj":"http://edamontology.org/data_1756"}],"attributes":[{"subj":"T1","pred":"source","obj":"EDAM-DFO"},{"subj":"T2","pred":"source","obj":"EDAM-DFO"},{"subj":"T3","pred":"source","obj":"EDAM-DFO"},{"subj":"T4","pred":"source","obj":"EDAM-DFO"},{"subj":"T5","pred":"source","obj":"EDAM-DFO"}]},{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":65,"end":90},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":144,"end":169},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"143495"},{"id":"A2","pred":"db_id","subj":"T2","obj":"143495"},{"subj":"T1","pred":"source","obj":"NCBITAXON"},{"subj":"T2","pred":"source","obj":"NCBITAXON"}]},{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":43,"end":48},"obj":"Body_part"},{"id":"T3","span":{"begin":122,"end":127},"obj":"Body_part"},{"id":"T5","span":{"begin":328,"end":333},"obj":"Body_part"},{"id":"T7","span":{"begin":371,"end":376},"obj":"Body_part"},{"id":"T9","span":{"begin":959,"end":964},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0000119"},{"id":"A2","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0022303"},{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0000119"},{"id":"A4","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0022303"},{"id":"A5","pred":"uberon_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/UBERON_0000119"},{"id":"A6","pred":"uberon_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/UBERON_0022303"},{"id":"A7","pred":"uberon_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/UBERON_0000119"},{"id":"A8","pred":"uberon_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/UBERON_0022303"},{"id":"A9","pred":"uberon_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/UBERON_0000119"},{"id":"A10","pred":"uberon_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/UBERON_0022303"},{"subj":"T1","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T3","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T5","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T7","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T9","pred":"source","obj":"Anatomy-UBERON"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"uniprot-human","color":"#ecd693","default":true},{"id":"GlycoBiology-FMA","color":"#bc93ec"},{"id":"GlycoBiology-NCBITAXON","color":"#93eca2"},{"id":"sentences","color":"#ec939d"},{"id":"GO-BP","color":"#93b7ec"},{"id":"GO-CC","color":"#d1ec93"},{"id":"EDAM-topics","color":"#ec93eb"},{"id":"EDAM-DFO","color":"#93ecd2"},{"id":"NCBITAXON","color":"#ecb893"},{"id":"Anatomy-UBERON","color":"#9e93ec"}]}]}}