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sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-91 Sentence denotes Glycan structure of a heptose-containing S-layer glycoprotein of Bacillus thermoaerophilus.
TextSentencer_T2 92-200 Sentence denotes The characterization of the S-layer glycoprotein of Bacillus thermoaerophilus revealed unexpected novelties.
TextSentencer_T3 201-344 Sentence denotes The isolation and purification procedure had to be changed due to complete solubility in aqueous buffers of the constituting S-layer protomers.
TextSentencer_T4 345-592 Sentence denotes Upon degradation of the S-layer glycoprotein by pronase and purification of the products by gel filtration, ion-exchange chromatography, chromatofocusing and HPLC, one representative glycopeptide fraction was selected for further characterization.
TextSentencer_T5 593-1007 Sentence denotes From the combined evidence of composition analysis, chemical degradation, NMR spectroscopy experiments and comparison with synthesized model substance, we propose the following repeating unit structure of the glycan chain: -->4)-alpha-L-Rhap-(1-->3)-beta-D-glycero-D-manno-Hepp-(1--> This is the first description of heptose residues occurring as a constituent of S-layer glycoproteins of gram-positive eubacteria.
T1 0-91 Sentence denotes Glycan structure of a heptose-containing S-layer glycoprotein of Bacillus thermoaerophilus.
T2 92-200 Sentence denotes The characterization of the S-layer glycoprotein of Bacillus thermoaerophilus revealed unexpected novelties.
T3 201-344 Sentence denotes The isolation and purification procedure had to be changed due to complete solubility in aqueous buffers of the constituting S-layer protomers.
T4 345-592 Sentence denotes Upon degradation of the S-layer glycoprotein by pronase and purification of the products by gel filtration, ion-exchange chromatography, chromatofocusing and HPLC, one representative glycopeptide fraction was selected for further characterization.
T5 593-1007 Sentence denotes From the combined evidence of composition analysis, chemical degradation, NMR spectroscopy experiments and comparison with synthesized model substance, we propose the following repeating unit structure of the glycan chain: -->4)-alpha-L-Rhap-(1-->3)-beta-D-glycero-D-manno-Hepp-(1--> This is the first description of heptose residues occurring as a constituent of S-layer glycoproteins of gram-positive eubacteria.
T1 0-91 Sentence denotes Glycan structure of a heptose-containing S-layer glycoprotein of Bacillus thermoaerophilus.
T2 92-200 Sentence denotes The characterization of the S-layer glycoprotein of Bacillus thermoaerophilus revealed unexpected novelties.
T3 201-344 Sentence denotes The isolation and purification procedure had to be changed due to complete solubility in aqueous buffers of the constituting S-layer protomers.
T4 345-592 Sentence denotes Upon degradation of the S-layer glycoprotein by pronase and purification of the products by gel filtration, ion-exchange chromatography, chromatofocusing and HPLC, one representative glycopeptide fraction was selected for further characterization.
T5 593-1007 Sentence denotes From the combined evidence of composition analysis, chemical degradation, NMR spectroscopy experiments and comparison with synthesized model substance, we propose the following repeating unit structure of the glycan chain: -->4)-alpha-L-Rhap-(1-->3)-beta-D-glycero-D-manno-Hepp-(1--> This is the first description of heptose residues occurring as a constituent of S-layer glycoproteins of gram-positive eubacteria.

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 49-61 FMAID:62925 denotes glycoprotein
_T2 49-61 FMAID:167256 denotes glycoprotein
_T3 128-140 FMAID:62925 denotes glycoprotein
_T4 128-140 FMAID:167256 denotes glycoprotein
_T5 377-389 FMAID:62925 denotes glycoprotein
_T6 377-389 FMAID:167256 denotes glycoprotein
_T7 528-540 FMAID:196778 denotes glycopeptide
_T8 528-540 FMAID:82784 denotes glycopeptide
_T9 623-634 FMAID:50603 denotes composition
_T10 623-634 FMAID:146309 denotes composition
_T11 860-865 FMAID:226916 denotes manno
_T12 965-978 FMAID:167256 denotes glycoproteins
_T13 965-978 FMAID:62925 denotes glycoproteins

uniprot-human

Id Subject Object Predicate Lexical cue
T1 819-827 http://www.uniprot.org/uniprot/P78318 denotes 4)-alpha

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 65-73 http://purl.bioontology.org/ontology/NCBITAXON/55087 denotes Bacillus
T2 65-90 http://purl.bioontology.org/ontology/NCBITAXON/1245522 denotes Bacillus thermoaerophilus
T3 65-90 http://purl.bioontology.org/ontology/NCBITAXON/33937 denotes Bacillus thermoaerophilus
T4 74-90 http://purl.bioontology.org/ontology/NCBITAXON/1100665 denotes thermoaerophilus
T5 144-152 http://purl.bioontology.org/ontology/NCBITAXON/55087 denotes Bacillus
T6 144-169 http://purl.bioontology.org/ontology/NCBITAXON/33937 denotes Bacillus thermoaerophilus
T7 144-169 http://purl.bioontology.org/ontology/NCBITAXON/1245522 denotes Bacillus thermoaerophilus
T8 153-169 http://purl.bioontology.org/ontology/NCBITAXON/1100665 denotes thermoaerophilus
T9 843-847 http://purl.bioontology.org/ontology/NCBITAXON/3554 denotes beta
T10 843-847 http://purl.bioontology.org/ontology/NCBITAXON/158455 denotes beta

GO-BP

Id Subject Object Predicate Lexical cue
T1 350-361 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation
T2 654-665 http://purl.obolibrary.org/obo/GO_0009056 denotes degradation
T3 457-465 http://purl.obolibrary.org/obo/GO_0015297 denotes exchange

GO-CC

Id Subject Object Predicate Lexical cue
T1 41-48 http://purl.obolibrary.org/obo/GO_0030115 denotes S-layer
T2 120-127 http://purl.obolibrary.org/obo/GO_0030115 denotes S-layer
T3 326-333 http://purl.obolibrary.org/obo/GO_0030115 denotes S-layer
T4 369-376 http://purl.obolibrary.org/obo/GO_0030115 denotes S-layer
T5 957-964 http://purl.obolibrary.org/obo/GO_0030115 denotes S-layer

EDAM-topics

Id Subject Object Predicate Lexical cue
T1 667-670 http://edamontology.org/topic_0593 denotes NMR
T2 667-683 http://edamontology.org/topic_0593 denotes NMR spectroscopy
T3 671-683 http://edamontology.org/topic_0593 denotes spectroscopy

EDAM-DFO

Id Subject Object Predicate Lexical cue
T1 7-16 http://edamontology.org/data_0883 denotes structure
T2 635-643 http://edamontology.org/operation_2945 denotes analysis
T3 700-710 http://edamontology.org/operation_2424 denotes comparison
T4 785-794 http://edamontology.org/data_0883 denotes structure
T5 918-926 http://edamontology.org/data_1756 denotes residues

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 65-90 OrganismTaxon denotes Bacillus thermoaerophilus 143495
T2 144-169 OrganismTaxon denotes Bacillus thermoaerophilus 143495

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 43-48 Body_part denotes layer http://purl.obolibrary.org/obo/UBERON_0000119|http://purl.obolibrary.org/obo/UBERON_0022303
T3 122-127 Body_part denotes layer http://purl.obolibrary.org/obo/UBERON_0000119|http://purl.obolibrary.org/obo/UBERON_0022303
T5 328-333 Body_part denotes layer http://purl.obolibrary.org/obo/UBERON_0000119|http://purl.obolibrary.org/obo/UBERON_0022303
T7 371-376 Body_part denotes layer http://purl.obolibrary.org/obo/UBERON_0000119|http://purl.obolibrary.org/obo/UBERON_0022303
T9 959-964 Body_part denotes layer http://purl.obolibrary.org/obo/UBERON_0000119|http://purl.obolibrary.org/obo/UBERON_0022303