PubMed:8480425 JSONTXT

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    jnlpba-st-training

    {"project":"jnlpba-st-training","denotations":[{"id":"T1","span":{"begin":0,"end":17},"obj":"protein"},{"id":"T2","span":{"begin":46,"end":50},"obj":"protein"},{"id":"T3","span":{"begin":75,"end":88},"obj":"cell_type"},{"id":"T4","span":{"begin":94,"end":150},"obj":"DNA"},{"id":"T5","span":{"begin":152,"end":161},"obj":"DNA"},{"id":"T6","span":{"begin":249,"end":259},"obj":"DNA"},{"id":"T7","span":{"begin":316,"end":341},"obj":"protein"},{"id":"T8","span":{"begin":357,"end":360},"obj":"protein"},{"id":"T9","span":{"begin":423,"end":426},"obj":"protein"},{"id":"T10","span":{"begin":450,"end":466},"obj":"protein"},{"id":"T11","span":{"begin":614,"end":641},"obj":"cell_line"},{"id":"T12","span":{"begin":691,"end":706},"obj":"protein"},{"id":"T13","span":{"begin":722,"end":725},"obj":"protein"},{"id":"T14","span":{"begin":755,"end":759},"obj":"protein"},{"id":"T15","span":{"begin":803,"end":816},"obj":"cell_type"},{"id":"T16","span":{"begin":832,"end":852},"obj":"cell_line"},{"id":"T17","span":{"begin":906,"end":942},"obj":"DNA"},{"id":"T18","span":{"begin":973,"end":1006},"obj":"protein"},{"id":"T19","span":{"begin":1008,"end":1011},"obj":"protein"},{"id":"T20","span":{"begin":1070,"end":1078},"obj":"DNA"},{"id":"T21","span":{"begin":1114,"end":1134},"obj":"cell_line"},{"id":"T22","span":{"begin":1203,"end":1207},"obj":"protein"},{"id":"T23","span":{"begin":1220,"end":1223},"obj":"protein"},{"id":"T24","span":{"begin":1254,"end":1264},"obj":"DNA"},{"id":"T25","span":{"begin":1279,"end":1295},"obj":"cell_type"}],"text":"HIV-1 Nef protein inhibits the recruitment of AP-1 DNA-binding activity in human T-cells.\nThe human immunodeficiency virus type 1 long terminal repeat, HIV-1-LTR, contains binding sites for several cellular transcription factors which contribute to HIV-1 gene expression. Our previous studies on the function of the HIV-1-encoded Nef protein suggested that Nef may be an inhibitor HIV-1 transcription. To determine whether Nef affects the binding of cellular factors implicated in HIV-1 regulation, 32P-labeled oligonucleotides corresponding to the binding sites were incubated with nuclear extracts prepared from Nef-expressing T-cell lines that were not stimulated or were stimulated with T-cell mitogens. We found that Nef inhibited the recruitment of AP-1 DNA-binding activity in mitogen-stimulated human T-cells. Additionally, Nef expressing cells were transiently transfected with a plasmid in which HIV-1 AP-1 DNA recognition sequences were cloned downstream of the chloramphenicol acetyltransferase (CAT) gene. Mitogen-mediated transcriptional activation of the CAT gene in this construct was inhibited in Nef-expressing cells but not in control cells. These studies suggest that, by inhibiting AP-1 activation, Nef may play a role in regulating HIV-1 gene expression in infected T-cells."}

    pubmed-sentences-benchmark

    {"project":"pubmed-sentences-benchmark","denotations":[{"id":"S1","span":{"begin":0,"end":89},"obj":"Sentence"},{"id":"S2","span":{"begin":90,"end":271},"obj":"Sentence"},{"id":"S3","span":{"begin":272,"end":401},"obj":"Sentence"},{"id":"S4","span":{"begin":402,"end":707},"obj":"Sentence"},{"id":"S5","span":{"begin":708,"end":817},"obj":"Sentence"},{"id":"S6","span":{"begin":818,"end":1018},"obj":"Sentence"},{"id":"S7","span":{"begin":1019,"end":1160},"obj":"Sentence"},{"id":"S8","span":{"begin":1161,"end":1296},"obj":"Sentence"}],"text":"HIV-1 Nef protein inhibits the recruitment of AP-1 DNA-binding activity in human T-cells.\nThe human immunodeficiency virus type 1 long terminal repeat, HIV-1-LTR, contains binding sites for several cellular transcription factors which contribute to HIV-1 gene expression. Our previous studies on the function of the HIV-1-encoded Nef protein suggested that Nef may be an inhibitor HIV-1 transcription. To determine whether Nef affects the binding of cellular factors implicated in HIV-1 regulation, 32P-labeled oligonucleotides corresponding to the binding sites were incubated with nuclear extracts prepared from Nef-expressing T-cell lines that were not stimulated or were stimulated with T-cell mitogens. We found that Nef inhibited the recruitment of AP-1 DNA-binding activity in mitogen-stimulated human T-cells. Additionally, Nef expressing cells were transiently transfected with a plasmid in which HIV-1 AP-1 DNA recognition sequences were cloned downstream of the chloramphenicol acetyltransferase (CAT) gene. Mitogen-mediated transcriptional activation of the CAT gene in this construct was inhibited in Nef-expressing cells but not in control cells. These studies suggest that, by inhibiting AP-1 activation, Nef may play a role in regulating HIV-1 gene expression in infected T-cells."}

    genia-medco-coref

    {"project":"genia-medco-coref","denotations":[{"id":"C1","span":{"begin":0,"end":17},"obj":"NP"},{"id":"C2","span":{"begin":90,"end":150},"obj":"NP"},{"id":"C3","span":{"begin":152,"end":161},"obj":"NP"},{"id":"C4","span":{"begin":190,"end":228},"obj":"NP"},{"id":"C5","span":{"begin":229,"end":234},"obj":"NP"},{"id":"C6","span":{"begin":249,"end":270},"obj":"NP"},{"id":"C7","span":{"begin":312,"end":341},"obj":"NP"},{"id":"C8","span":{"begin":357,"end":360},"obj":"NP"},{"id":"C9","span":{"begin":423,"end":426},"obj":"NP"},{"id":"C10","span":{"begin":614,"end":641},"obj":"NP"},{"id":"C11","span":{"begin":642,"end":646},"obj":"NP"},{"id":"C12","span":{"begin":722,"end":725},"obj":"NP"},{"id":"C13","span":{"begin":832,"end":852},"obj":"NP"},{"id":"C14","span":{"begin":887,"end":896},"obj":"NP"},{"id":"C15","span":{"begin":900,"end":905},"obj":"NP"},{"id":"C16","span":{"begin":969,"end":1017},"obj":"NP"},{"id":"C17","span":{"begin":1066,"end":1078},"obj":"NP"},{"id":"C18","span":{"begin":1114,"end":1134},"obj":"NP"},{"id":"C19","span":{"begin":1220,"end":1223},"obj":"NP"},{"id":"C20","span":{"begin":1254,"end":1275},"obj":"NP"}],"relations":[{"id":"R1","pred":"coref-appos","subj":"C3","obj":"C2"},{"id":"R2","pred":"coref-relat","subj":"C5","obj":"C4"},{"id":"R3","pred":"coref-other","subj":"C7","obj":"C1"},{"id":"R4","pred":"coref-ident","subj":"C9","obj":"C8"},{"id":"R5","pred":"coref-relat","subj":"C11","obj":"C10"},{"id":"R6","pred":"coref-ident","subj":"C12","obj":"C9"},{"id":"R7","pred":"coref-other","subj":"C13","obj":"C10"},{"id":"R8","pred":"coref-relat","subj":"C15","obj":"C14"},{"id":"R9","pred":"coref-ident","subj":"C17","obj":"C16"},{"id":"R10","pred":"coref-ident","subj":"C18","obj":"C13"},{"id":"R11","pred":"coref-ident","subj":"C19","obj":"C12"},{"id":"R12","pred":"coref-ident","subj":"C20","obj":"C6"}],"text":"HIV-1 Nef protein inhibits the recruitment of AP-1 DNA-binding activity in human T-cells.\nThe human immunodeficiency virus type 1 long terminal repeat, HIV-1-LTR, contains binding sites for several cellular transcription factors which contribute to HIV-1 gene expression. Our previous studies on the function of the HIV-1-encoded Nef protein suggested that Nef may be an inhibitor HIV-1 transcription. To determine whether Nef affects the binding of cellular factors implicated in HIV-1 regulation, 32P-labeled oligonucleotides corresponding to the binding sites were incubated with nuclear extracts prepared from Nef-expressing T-cell lines that were not stimulated or were stimulated with T-cell mitogens. We found that Nef inhibited the recruitment of AP-1 DNA-binding activity in mitogen-stimulated human T-cells. Additionally, Nef expressing cells were transiently transfected with a plasmid in which HIV-1 AP-1 DNA recognition sequences were cloned downstream of the chloramphenicol acetyltransferase (CAT) gene. Mitogen-mediated transcriptional activation of the CAT gene in this construct was inhibited in Nef-expressing cells but not in control cells. These studies suggest that, by inhibiting AP-1 activation, Nef may play a role in regulating HIV-1 gene expression in infected T-cells."}

    GENIAcorpus

    {"project":"GENIAcorpus","denotations":[{"id":"T1","span":{"begin":0,"end":17},"obj":"protein_molecule"},{"id":"T2","span":{"begin":46,"end":50},"obj":"protein_molecule"},{"id":"T3","span":{"begin":75,"end":88},"obj":"cell_type"},{"id":"T4","span":{"begin":94,"end":129},"obj":"virus"},{"id":"T5","span":{"begin":152,"end":161},"obj":"DNA_domain_or_region"},{"id":"T6","span":{"begin":249,"end":259},"obj":"DNA_molecule"},{"id":"T7","span":{"begin":316,"end":341},"obj":"protein_molecule"},{"id":"T8","span":{"begin":357,"end":360},"obj":"protein_family_or_group"},{"id":"T9","span":{"begin":381,"end":400},"obj":"other_name"},{"id":"T10","span":{"begin":423,"end":426},"obj":"protein_family_or_group"},{"id":"T11","span":{"begin":450,"end":466},"obj":"protein_family_or_group"},{"id":"T12","span":{"begin":481,"end":497},"obj":"other_name"},{"id":"T13","span":{"begin":499,"end":527},"obj":"polynucleotide"},{"id":"T14","span":{"begin":583,"end":599},"obj":"cell_component"},{"id":"T15","span":{"begin":614,"end":641},"obj":"cell_line"},{"id":"T16","span":{"begin":691,"end":706},"obj":"protein_family_or_group"},{"id":"T17","span":{"begin":722,"end":725},"obj":"protein_family_or_group"},{"id":"T18","span":{"begin":755,"end":759},"obj":"protein_molecule"},{"id":"T19","span":{"begin":803,"end":816},"obj":"cell_type"},{"id":"T20","span":{"begin":832,"end":835},"obj":"protein_family_or_group"},{"id":"T21","span":{"begin":906,"end":942},"obj":"DNA_domain_or_region"},{"id":"T22","span":{"begin":973,"end":1006},"obj":"protein_molecule"},{"id":"T23","span":{"begin":1008,"end":1011},"obj":"protein_molecule"},{"id":"T24","span":{"begin":1070,"end":1078},"obj":"DNA_domain_or_region"},{"id":"T25","span":{"begin":1114,"end":1117},"obj":"protein_family_or_group"},{"id":"T26","span":{"begin":1203,"end":1207},"obj":"protein_molecule"},{"id":"T27","span":{"begin":1220,"end":1223},"obj":"protein_family_or_group"},{"id":"T28","span":{"begin":1254,"end":1264},"obj":"DNA_molecule"},{"id":"T29","span":{"begin":1279,"end":1295},"obj":"cell_type"}],"text":"HIV-1 Nef protein inhibits the recruitment of AP-1 DNA-binding activity in human T-cells.\nThe human immunodeficiency virus type 1 long terminal repeat, HIV-1-LTR, contains binding sites for several cellular transcription factors which contribute to HIV-1 gene expression. Our previous studies on the function of the HIV-1-encoded Nef protein suggested that Nef may be an inhibitor HIV-1 transcription. To determine whether Nef affects the binding of cellular factors implicated in HIV-1 regulation, 32P-labeled oligonucleotides corresponding to the binding sites were incubated with nuclear extracts prepared from Nef-expressing T-cell lines that were not stimulated or were stimulated with T-cell mitogens. We found that Nef inhibited the recruitment of AP-1 DNA-binding activity in mitogen-stimulated human T-cells. Additionally, Nef expressing cells were transiently transfected with a plasmid in which HIV-1 AP-1 DNA recognition sequences were cloned downstream of the chloramphenicol acetyltransferase (CAT) gene. Mitogen-mediated transcriptional activation of the CAT gene in this construct was inhibited in Nef-expressing cells but not in control cells. These studies suggest that, by inhibiting AP-1 activation, Nef may play a role in regulating HIV-1 gene expression in infected T-cells."}