PubMed:8444876
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/8444876","sourcedb":"PubMed","sourceid":"8444876","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/8444876","text":"A serum response element and a binding site for NF-Y mediate the serum response of the human thrombospondin 1 gene.\nThe expression of thrombospondin 1 (TSP 1), a member of the TSP gene family, is rapidly induced by growth factors. We tested the ability of human TSP 1-chloramphenicol acetyltransferase constructs to respond to serum in stably transfected NIH-3T3 cells. Two transcriptional elements in the TSP 1 promoter, a distal element at -1280 and a proximal element at -65, were required for the response of the human TSP 1 gene to serum. The distal element contains the 5'-CC(A + T)6GG-3' consensus sequence characteristic of a serum-response element (SRE). Deletions or mutations in this element reduced the serum response of the TSP 1 gene by 80-90%. In gel-shift assays, the -1280 element and the c-fos SRE cross-competed, whereas their functional and binding mutants did not. The proximal element contains the sequence 5'-GGCCAATGGG-3', which closely resembles the consensus binding motif for the CCAAT-binding factor NF-Y (CBF, CP1, alpha CP1). Deletions or mutations in this element also reduced the serum response by 80-90%. Methylation interference analysis of the -65 region identified a pattern of contacts with nuclear factors resembling that for NF-Y, and an NF-Y-binding site and the proximal TSP 1 element cross-competed in gel-shift assays, whereas their binding mutants did not. Finally, an abbreviated TSP 1 promoter/5'-flank, containing the SRE- and NF-Y-binding sites, mediated a serum response that was close in magnitude to that of the parent promoter. We conclude that the serum response of the human TSP 1 gene requires the coordinated function of an SRE- and NF-Y-binding site.","tracks":[{"project":"genia-medco-coref","denotations":[{"id":"C1","span":{"begin":0,"end":24},"obj":"NP"},{"id":"C3","span":{"begin":48,"end":52},"obj":"NP"},{"id":"C2","span":{"begin":29,"end":52},"obj":"NP"},{"id":"C5","span":{"begin":83,"end":114},"obj":"NP"},{"id":"C4","span":{"begin":61,"end":114},"obj":"NP"},{"id":"C6","span":{"begin":134,"end":158},"obj":"NP"},{"id":"C7","span":{"begin":160,"end":191},"obj":"NP"},{"id":"C8","span":{"begin":327,"end":332},"obj":"NP"},{"id":"C10","span":{"begin":406,"end":411},"obj":"NP"},{"id":"C9","span":{"begin":370,"end":420},"obj":"NP"},{"id":"C12","span":{"begin":422,"end":447},"obj":"NP"},{"id":"C13","span":{"begin":452,"end":477},"obj":"NP"},{"id":"C11","span":{"begin":422,"end":477},"obj":"NP"},{"id":"C15","span":{"begin":513,"end":533},"obj":"NP"},{"id":"C16","span":{"begin":537,"end":542},"obj":"NP"},{"id":"C14","span":{"begin":497,"end":542},"obj":"NP"},{"id":"C17","span":{"begin":544,"end":562},"obj":"NP"},{"id":"C18","span":{"begin":632,"end":662},"obj":"NP"},{"id":"C19","span":{"begin":690,"end":702},"obj":"NP"},{"id":"C21","span":{"begin":733,"end":747},"obj":"NP"},{"id":"C20","span":{"begin":711,"end":747},"obj":"NP"},{"id":"C23","span":{"begin":780,"end":797},"obj":"NP"},{"id":"C22","span":{"begin":780,"end":815},"obj":"NP"},{"id":"C24","span":{"begin":840,"end":845},"obj":"NP"},{"id":"C25","span":{"begin":886,"end":906},"obj":"NP"},{"id":"C26","span":{"begin":916,"end":945},"obj":"NP"},{"id":"C27","span":{"begin":947,"end":952},"obj":"NP"},{"id":"C28","span":{"begin":1003,"end":1032},"obj":"NP"},{"id":"C29","span":{"begin":1082,"end":1094},"obj":"NP"},{"id":"C30","span":{"begin":1108,"end":1126},"obj":"NP"},{"id":"C31","span":{"begin":1201,"end":1243},"obj":"NP"},{"id":"C32","span":{"begin":1255,"end":1259},"obj":"NP"},{"id":"C33","span":{"begin":1264,"end":1268},"obj":"NP"},{"id":"C35","span":{"begin":1274,"end":1294},"obj":"NP"},{"id":"C37","span":{"begin":1312,"end":1317},"obj":"NP"},{"id":"C36","span":{"begin":1299,"end":1325},"obj":"NP"},{"id":"C34","span":{"begin":1274,"end":1325},"obj":"NP"},{"id":"C38","span":{"begin":1370,"end":1375},"obj":"NP"},{"id":"C39","span":{"begin":1425,"end":1430},"obj":"NP"},{"id":"C40","span":{"begin":1461,"end":1492},"obj":"NP"},{"id":"C41","span":{"begin":1503,"end":1519},"obj":"NP"},{"id":"C42","span":{"begin":1520,"end":1524},"obj":"NP"},{"id":"C43","span":{"begin":1551,"end":1555},"obj":"NP"},{"id":"C45","span":{"begin":1619,"end":1639},"obj":"NP"},{"id":"C44","span":{"begin":1597,"end":1639},"obj":"NP"},{"id":"C46","span":{"begin":1677,"end":1706},"obj":"NP"}],"relations":[{"id":"R1","pred":"coref-ident","subj":"C6","obj":"C5"},{"id":"R2","pred":"coref-appos","subj":"C7","obj":"C6"},{"id":"R3","pred":"coref-ident","subj":"C10","obj":"C6"},{"id":"R4","pred":"coref-appos","subj":"C11","obj":"C9"},{"id":"R5","pred":"coref-ident","subj":"C15","obj":"C10"},{"id":"R6","pred":"coref-ident","subj":"C16","obj":"C8"},{"id":"R7","pred":"coref-ident","subj":"C14","obj":"C4"},{"id":"R8","pred":"coref-ident","subj":"C17","obj":"C12"},{"id":"R9","pred":"coref-other","subj":"C18","obj":"C1"},{"id":"R10","pred":"coref-ident","subj":"C19","obj":"C17"},{"id":"R11","pred":"coref-ident","subj":"C21","obj":"C15"},{"id":"R12","pred":"coref-ident","subj":"C20","obj":"C14"},{"id":"R13","pred":"coref-ident","subj":"C23","obj":"C19"},{"id":"R14","pred":"coref-pron","subj":"C24","obj":"C22"},{"id":"R15","pred":"coref-ident","subj":"C25","obj":"C13"},{"id":"R16","pred":"coref-relat","subj":"C27","obj":"C26"},{"id":"R17","pred":"coref-ident","subj":"C28","obj":"C3"},{"id":"R18","pred":"coref-ident","subj":"C29","obj":"C25"},{"id":"R19","pred":"coref-ident","subj":"C30","obj":"C20"},{"id":"R20","pred":"coref-pron","subj":"C32","obj":"C31"},{"id":"R21","pred":"coref-ident","subj":"C33","obj":"C28"},{"id":"R22","pred":"coref-ident","subj":"C35","obj":"C2"},{"id":"R23","pred":"coref-ident","subj":"C37","obj":"C21"},{"id":"R24","pred":"coref-ident","subj":"C36","obj":"C29"},{"id":"R25","pred":"coref-pron","subj":"C38","obj":"C34"},{"id":"R26","pred":"coref-ident","subj":"C39","obj":"C37"},{"id":"R27","pred":"coref-relat","subj":"C42","obj":"C41"},{"id":"R28","pred":"coref-pron","subj":"C43","obj":"C41"},{"id":"R29","pred":"coref-ident","subj":"C45","obj":"C39"},{"id":"R30","pred":"coref-ident","subj":"C44","obj":"C30"},{"id":"R31","pred":"coref-other","subj":"C46","obj":"C40"}],"attributes":[{"subj":"C1","pred":"source","obj":"genia-medco-coref"},{"subj":"C3","pred":"source","obj":"genia-medco-coref"},{"subj":"C2","pred":"source","obj":"genia-medco-coref"},{"subj":"C5","pred":"source","obj":"genia-medco-coref"},{"subj":"C4","pred":"source","obj":"genia-medco-coref"},{"subj":"C6","pred":"source","obj":"genia-medco-coref"},{"subj":"C7","pred":"source","obj":"genia-medco-coref"},{"subj":"C8","pred":"source","obj":"genia-medco-coref"},{"subj":"C10","pred":"source","obj":"genia-medco-coref"},{"subj":"C9","pred":"source","obj":"genia-medco-coref"},{"subj":"C12","pred":"source","obj":"genia-medco-coref"},{"subj":"C13","pred":"source","obj":"genia-medco-coref"},{"subj":"C11","pred":"source","obj":"genia-medco-coref"},{"subj":"C15","pred":"source","obj":"genia-medco-coref"},{"subj":"C16","pred":"source","obj":"genia-medco-coref"},{"subj":"C14","pred":"source","obj":"genia-medco-coref"},{"subj":"C17","pred":"source","obj":"genia-medco-coref"},{"subj":"C18","pred":"source","obj":"genia-medco-coref"},{"subj":"C19","pred":"source","obj":"genia-medco-coref"},{"subj":"C21","pred":"source","obj":"genia-medco-coref"},{"subj":"C20","pred":"source","obj":"genia-medco-coref"},{"subj":"C23","pred":"source","obj":"genia-medco-coref"},{"subj":"C22","pred":"source","obj":"genia-medco-coref"},{"subj":"C24","pred":"source","obj":"genia-medco-coref"},{"subj":"C25","pred":"source","obj":"genia-medco-coref"},{"subj":"C26","pred":"source","obj":"genia-medco-coref"},{"subj":"C27","pred":"source","obj":"genia-medco-coref"},{"subj":"C28","pred":"source","obj":"genia-medco-coref"},{"subj":"C29","pred":"source","obj":"genia-medco-coref"},{"subj":"C30","pred":"source","obj":"genia-medco-coref"},{"subj":"C31","pred":"source","obj":"genia-medco-coref"},{"subj":"C32","pred":"source","obj":"genia-medco-coref"},{"subj":"C33","pred":"source","obj":"genia-medco-coref"},{"subj":"C35","pred":"source","obj":"genia-medco-coref"},{"subj":"C37","pred":"source","obj":"genia-medco-coref"},{"subj":"C36","pred":"source","obj":"genia-medco-coref"},{"subj":"C34","pred":"source","obj":"genia-medco-coref"},{"subj":"C38","pred":"source","obj":"genia-medco-coref"},{"subj":"C39","pred":"source","obj":"genia-medco-coref"},{"subj":"C40","pred":"source","obj":"genia-medco-coref"},{"subj":"C41","pred":"source","obj":"genia-medco-coref"},{"subj":"C42","pred":"source","obj":"genia-medco-coref"},{"subj":"C43","pred":"source","obj":"genia-medco-coref"},{"subj":"C45","pred":"source","obj":"genia-medco-coref"},{"subj":"C44","pred":"source","obj":"genia-medco-coref"},{"subj":"C46","pred":"source","obj":"genia-medco-coref"}]},{"project":"jnlpba-st-training","denotations":[{"id":"T1","span":{"begin":2,"end":24},"obj":"DNA"},{"id":"T2","span":{"begin":31,"end":52},"obj":"DNA"},{"id":"T3","span":{"begin":87,"end":114},"obj":"DNA"},{"id":"T4","span":{"begin":134,"end":150},"obj":"protein"},{"id":"T5","span":{"begin":152,"end":157},"obj":"protein"},{"id":"T6","span":{"begin":176,"end":191},"obj":"DNA"},{"id":"T7","span":{"begin":256,"end":312},"obj":"DNA"},{"id":"T8","span":{"begin":406,"end":411},"obj":"protein"},{"id":"T9","span":{"begin":737,"end":747},"obj":"DNA"},{"id":"T10","span":{"begin":784,"end":797},"obj":"DNA"},{"id":"T11","span":{"begin":806,"end":821},"obj":"DNA"},{"id":"T12","span":{"begin":861,"end":876},"obj":"DNA"},{"id":"T13","span":{"begin":890,"end":906},"obj":"DNA"},{"id":"T14","span":{"begin":1007,"end":1027},"obj":"DNA"},{"id":"T15","span":{"begin":1028,"end":1032},"obj":"protein"},{"id":"T16","span":{"begin":1034,"end":1037},"obj":"protein"},{"id":"T17","span":{"begin":1039,"end":1042},"obj":"protein"},{"id":"T18","span":{"begin":1044,"end":1053},"obj":"protein"},{"id":"T19","span":{"begin":1179,"end":1189},"obj":"DNA"},{"id":"T20","span":{"begin":1228,"end":1243},"obj":"protein"},{"id":"T21","span":{"begin":1264,"end":1268},"obj":"protein"},{"id":"T22","span":{"begin":1277,"end":1294},"obj":"DNA"},{"id":"T23","span":{"begin":1303,"end":1325},"obj":"DNA"},{"id":"T24","span":{"begin":1376,"end":1391},"obj":"DNA"},{"id":"T25","span":{"begin":1413,"end":1448},"obj":"DNA"},{"id":"T26","span":{"begin":1465,"end":1492},"obj":"DNA"},{"id":"T27","span":{"begin":1563,"end":1578},"obj":"DNA"},{"id":"T28","span":{"begin":1629,"end":1639},"obj":"DNA"},{"id":"T29","span":{"begin":1680,"end":1706},"obj":"DNA"}],"attributes":[{"subj":"T1","pred":"source","obj":"jnlpba-st-training"},{"subj":"T2","pred":"source","obj":"jnlpba-st-training"},{"subj":"T3","pred":"source","obj":"jnlpba-st-training"},{"subj":"T4","pred":"source","obj":"jnlpba-st-training"},{"subj":"T5","pred":"source","obj":"jnlpba-st-training"},{"subj":"T6","pred":"source","obj":"jnlpba-st-training"},{"subj":"T7","pred":"source","obj":"jnlpba-st-training"},{"subj":"T8","pred":"source","obj":"jnlpba-st-training"},{"subj":"T9","pred":"source","obj":"jnlpba-st-training"},{"subj":"T10","pred":"source","obj":"jnlpba-st-training"},{"subj":"T11","pred":"source","obj":"jnlpba-st-training"},{"subj":"T12","pred":"source","obj":"jnlpba-st-training"},{"subj":"T13","pred":"source","obj":"jnlpba-st-training"},{"subj":"T14","pred":"source","obj":"jnlpba-st-training"},{"subj":"T15","pred":"source","obj":"jnlpba-st-training"},{"subj":"T16","pred":"source","obj":"jnlpba-st-training"},{"subj":"T17","pred":"source","obj":"jnlpba-st-training"},{"subj":"T18","pred":"source","obj":"jnlpba-st-training"},{"subj":"T19","pred":"source","obj":"jnlpba-st-training"},{"subj":"T20","pred":"source","obj":"jnlpba-st-training"},{"subj":"T21","pred":"source","obj":"jnlpba-st-training"},{"subj":"T22","pred":"source","obj":"jnlpba-st-training"},{"subj":"T23","pred":"source","obj":"jnlpba-st-training"},{"subj":"T24","pred":"source","obj":"jnlpba-st-training"},{"subj":"T25","pred":"source","obj":"jnlpba-st-training"},{"subj":"T26","pred":"source","obj":"jnlpba-st-training"},{"subj":"T27","pred":"source","obj":"jnlpba-st-training"},{"subj":"T28","pred":"source","obj":"jnlpba-st-training"},{"subj":"T29","pred":"source","obj":"jnlpba-st-training"}]},{"project":"sentences","denotations":[{"id":"T1","span":{"begin":0,"end":115},"obj":"Sentence"},{"id":"T2","span":{"begin":116,"end":230},"obj":"Sentence"},{"id":"T3","span":{"begin":231,"end":369},"obj":"Sentence"},{"id":"T4","span":{"begin":370,"end":543},"obj":"Sentence"},{"id":"T5","span":{"begin":544,"end":663},"obj":"Sentence"},{"id":"T6","span":{"begin":664,"end":758},"obj":"Sentence"},{"id":"T7","span":{"begin":759,"end":885},"obj":"Sentence"},{"id":"T8","span":{"begin":886,"end":1055},"obj":"Sentence"},{"id":"T9","span":{"begin":1056,"end":1137},"obj":"Sentence"},{"id":"T10","span":{"begin":1138,"end":1400},"obj":"Sentence"},{"id":"T11","span":{"begin":1401,"end":1579},"obj":"Sentence"},{"id":"T12","span":{"begin":1580,"end":1707},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":115},"obj":"Sentence"},{"id":"T2","span":{"begin":116,"end":230},"obj":"Sentence"},{"id":"T3","span":{"begin":231,"end":369},"obj":"Sentence"},{"id":"T4","span":{"begin":370,"end":543},"obj":"Sentence"},{"id":"T5","span":{"begin":544,"end":663},"obj":"Sentence"},{"id":"T6","span":{"begin":664,"end":758},"obj":"Sentence"},{"id":"T7","span":{"begin":759,"end":885},"obj":"Sentence"},{"id":"T8","span":{"begin":886,"end":1055},"obj":"Sentence"},{"id":"T9","span":{"begin":1056,"end":1137},"obj":"Sentence"},{"id":"T10","span":{"begin":1138,"end":1400},"obj":"Sentence"},{"id":"T11","span":{"begin":1401,"end":1579},"obj":"Sentence"},{"id":"T12","span":{"begin":1580,"end":1707},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"},{"subj":"T10","pred":"source","obj":"sentences"},{"subj":"T11","pred":"source","obj":"sentences"},{"subj":"T12","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"},{"subj":"T10","pred":"source","obj":"sentences"},{"subj":"T11","pred":"source","obj":"sentences"},{"subj":"T12","pred":"source","obj":"sentences"}]},{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":87,"end":92},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":256,"end":261},"obj":"OrganismTaxon"},{"id":"T3","span":{"begin":517,"end":522},"obj":"OrganismTaxon"},{"id":"T4","span":{"begin":1623,"end":1628},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"9606"},{"id":"A2","pred":"db_id","subj":"T2","obj":"9606"},{"id":"A3","pred":"db_id","subj":"T3","obj":"9606"},{"id":"A4","pred":"db_id","subj":"T4","obj":"9606"},{"subj":"T1","pred":"source","obj":"NCBITAXON"},{"subj":"T2","pred":"source","obj":"NCBITAXON"},{"subj":"T3","pred":"source","obj":"NCBITAXON"},{"subj":"T4","pred":"source","obj":"NCBITAXON"}]},{"project":"pubmed-sentences-benchmark","denotations":[{"id":"S1","span":{"begin":0,"end":115},"obj":"Sentence"},{"id":"S2","span":{"begin":116,"end":230},"obj":"Sentence"},{"id":"S3","span":{"begin":231,"end":369},"obj":"Sentence"},{"id":"S4","span":{"begin":370,"end":543},"obj":"Sentence"},{"id":"S5","span":{"begin":544,"end":663},"obj":"Sentence"},{"id":"S6","span":{"begin":664,"end":758},"obj":"Sentence"},{"id":"S7","span":{"begin":759,"end":885},"obj":"Sentence"},{"id":"S8","span":{"begin":886,"end":1055},"obj":"Sentence"},{"id":"S9","span":{"begin":1056,"end":1137},"obj":"Sentence"},{"id":"S10","span":{"begin":1138,"end":1400},"obj":"Sentence"},{"id":"S11","span":{"begin":1401,"end":1579},"obj":"Sentence"},{"id":"S12","span":{"begin":1580,"end":1707},"obj":"Sentence"}],"attributes":[{"subj":"S1","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S2","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S3","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S4","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S5","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S6","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S7","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S8","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S9","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S10","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S11","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S12","pred":"source","obj":"pubmed-sentences-benchmark"}]},{"project":"GENIAcorpus","denotations":[{"id":"T1","span":{"begin":2,"end":24},"obj":"DNA_domain_or_region"},{"id":"T2","span":{"begin":31,"end":47},"obj":"DNA_domain_or_region"},{"id":"T3","span":{"begin":48,"end":52},"obj":"protein_family_or_group"},{"id":"T4","span":{"begin":65,"end":79},"obj":"other_name"},{"id":"T5","span":{"begin":87,"end":114},"obj":"DNA_domain_or_region"},{"id":"T6","span":{"begin":134,"end":150},"obj":"protein_molecule"},{"id":"T7","span":{"begin":152,"end":157},"obj":"protein_molecule"},{"id":"T8","span":{"begin":176,"end":191},"obj":"DNA_family_or_group"},{"id":"T9","span":{"begin":256,"end":261},"obj":"DNA_molecule"},{"id":"T10","span":{"begin":262,"end":267},"obj":"protein_molecule"},{"id":"T11","span":{"begin":267,"end":301},"obj":"protein_molecule"},{"id":"T12","span":{"begin":327,"end":332},"obj":"tissue"},{"id":"T13","span":{"begin":406,"end":411},"obj":"protein_molecule"},{"id":"T14","span":{"begin":537,"end":542},"obj":"tissue"},{"id":"T15","span":{"begin":715,"end":720},"obj":"tissue"},{"id":"T16","span":{"begin":737,"end":747},"obj":"DNA_domain_or_region"},{"id":"T17","span":{"begin":762,"end":778},"obj":"other_name"},{"id":"T18","span":{"begin":784,"end":797},"obj":"DNA_domain_or_region"},{"id":"T19","span":{"begin":806,"end":821},"obj":"DNA_molecule"},{"id":"T20","span":{"begin":861,"end":876},"obj":"DNA_molecule"},{"id":"T21","span":{"begin":890,"end":906},"obj":"DNA_domain_or_region"},{"id":"T22","span":{"begin":929,"end":945},"obj":"polynucleotide"},{"id":"T23","span":{"begin":1007,"end":1027},"obj":"DNA_family_or_group"},{"id":"T24","span":{"begin":1028,"end":1032},"obj":"protein_family_or_group"},{"id":"T25","span":{"begin":1034,"end":1037},"obj":"protein_molecule"},{"id":"T26","span":{"begin":1039,"end":1042},"obj":"protein_molecule"},{"id":"T27","span":{"begin":1044,"end":1053},"obj":"protein_molecule"},{"id":"T28","span":{"begin":1112,"end":1126},"obj":"other_name"},{"id":"T29","span":{"begin":1138,"end":1171},"obj":"other_name"},{"id":"T30","span":{"begin":1179,"end":1189},"obj":"DNA_domain_or_region"},{"id":"T31","span":{"begin":1228,"end":1243},"obj":"protein_family_or_group"},{"id":"T32","span":{"begin":1264,"end":1268},"obj":"protein_family_or_group"},{"id":"T33","span":{"begin":1277,"end":1281},"obj":"protein_family_or_group"},{"id":"T34","span":{"begin":1303,"end":1325},"obj":"DNA_domain_or_region"},{"id":"T35","span":{"begin":1344,"end":1360},"obj":"other_name"},{"id":"T36","span":{"begin":1376,"end":1391},"obj":"DNA_molecule"},{"id":"T37","span":{"begin":1413,"end":1448},"obj":"DNA_domain_or_region"},{"id":"T38","span":{"begin":1505,"end":1519},"obj":"other_name"},{"id":"T39","span":{"begin":1563,"end":1578},"obj":"DNA_domain_or_region"},{"id":"T40","span":{"begin":1601,"end":1615},"obj":"other_name"},{"id":"T41","span":{"begin":1629,"end":1639},"obj":"DNA_domain_or_region"}],"attributes":[{"subj":"T1","pred":"source","obj":"GENIAcorpus"},{"subj":"T2","pred":"source","obj":"GENIAcorpus"},{"subj":"T3","pred":"source","obj":"GENIAcorpus"},{"subj":"T4","pred":"source","obj":"GENIAcorpus"},{"subj":"T5","pred":"source","obj":"GENIAcorpus"},{"subj":"T6","pred":"source","obj":"GENIAcorpus"},{"subj":"T7","pred":"source","obj":"GENIAcorpus"},{"subj":"T8","pred":"source","obj":"GENIAcorpus"},{"subj":"T9","pred":"source","obj":"GENIAcorpus"},{"subj":"T10","pred":"source","obj":"GENIAcorpus"},{"subj":"T11","pred":"source","obj":"GENIAcorpus"},{"subj":"T12","pred":"source","obj":"GENIAcorpus"},{"subj":"T13","pred":"source","obj":"GENIAcorpus"},{"subj":"T14","pred":"source","obj":"GENIAcorpus"},{"subj":"T15","pred":"source","obj":"GENIAcorpus"},{"subj":"T16","pred":"source","obj":"GENIAcorpus"},{"subj":"T17","pred":"source","obj":"GENIAcorpus"},{"subj":"T18","pred":"source","obj":"GENIAcorpus"},{"subj":"T19","pred":"source","obj":"GENIAcorpus"},{"subj":"T20","pred":"source","obj":"GENIAcorpus"},{"subj":"T21","pred":"source","obj":"GENIAcorpus"},{"subj":"T22","pred":"source","obj":"GENIAcorpus"},{"subj":"T23","pred":"source","obj":"GENIAcorpus"},{"subj":"T24","pred":"source","obj":"GENIAcorpus"},{"subj":"T25","pred":"source","obj":"GENIAcorpus"},{"subj":"T26","pred":"source","obj":"GENIAcorpus"},{"subj":"T27","pred":"source","obj":"GENIAcorpus"},{"subj":"T28","pred":"source","obj":"GENIAcorpus"},{"subj":"T29","pred":"source","obj":"GENIAcorpus"},{"subj":"T30","pred":"source","obj":"GENIAcorpus"},{"subj":"T31","pred":"source","obj":"GENIAcorpus"},{"subj":"T32","pred":"source","obj":"GENIAcorpus"},{"subj":"T33","pred":"source","obj":"GENIAcorpus"},{"subj":"T34","pred":"source","obj":"GENIAcorpus"},{"subj":"T35","pred":"source","obj":"GENIAcorpus"},{"subj":"T36","pred":"source","obj":"GENIAcorpus"},{"subj":"T37","pred":"source","obj":"GENIAcorpus"},{"subj":"T38","pred":"source","obj":"GENIAcorpus"},{"subj":"T39","pred":"source","obj":"GENIAcorpus"},{"subj":"T40","pred":"source","obj":"GENIAcorpus"},{"subj":"T41","pred":"source","obj":"GENIAcorpus"}]},{"project":"mondo_disease","denotations":[{"id":"T1","span":{"begin":152,"end":155},"obj":"Disease"},{"id":"T2","span":{"begin":176,"end":179},"obj":"Disease"},{"id":"T3","span":{"begin":262,"end":265},"obj":"Disease"},{"id":"T4","span":{"begin":406,"end":409},"obj":"Disease"},{"id":"T5","span":{"begin":523,"end":526},"obj":"Disease"},{"id":"T6","span":{"begin":737,"end":740},"obj":"Disease"},{"id":"T7","span":{"begin":1312,"end":1315},"obj":"Disease"},{"id":"T8","span":{"begin":1425,"end":1428},"obj":"Disease"},{"id":"T9","span":{"begin":1629,"end":1632},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0008039"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MONDO_0008039"},{"id":"A3","pred":"mondo_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MONDO_0008039"},{"id":"A4","pred":"mondo_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/MONDO_0008039"},{"id":"A5","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0008039"},{"id":"A6","pred":"mondo_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/MONDO_0008039"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0008039"},{"id":"A8","pred":"mondo_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/MONDO_0008039"},{"id":"A9","pred":"mondo_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/MONDO_0008039"},{"subj":"T1","pred":"source","obj":"mondo_disease"},{"subj":"T2","pred":"source","obj":"mondo_disease"},{"subj":"T3","pred":"source","obj":"mondo_disease"},{"subj":"T4","pred":"source","obj":"mondo_disease"},{"subj":"T5","pred":"source","obj":"mondo_disease"},{"subj":"T6","pred":"source","obj":"mondo_disease"},{"subj":"T7","pred":"source","obj":"mondo_disease"},{"subj":"T8","pred":"source","obj":"mondo_disease"},{"subj":"T9","pred":"source","obj":"mondo_disease"}]},{"project":"Glycosmos6-MAT","denotations":[{"id":"T1","span":{"begin":454,"end":462},"obj":"http://purl.obolibrary.org/obo/MAT_0000491"},{"id":"T2","span":{"begin":890,"end":898},"obj":"http://purl.obolibrary.org/obo/MAT_0000491"},{"id":"T3","span":{"begin":1303,"end":1311},"obj":"http://purl.obolibrary.org/obo/MAT_0000491"}],"attributes":[{"subj":"T1","pred":"source","obj":"Glycosmos6-MAT"},{"subj":"T2","pred":"source","obj":"Glycosmos6-MAT"},{"subj":"T3","pred":"source","obj":"Glycosmos6-MAT"}]},{"project":"Anatomy-MAT","denotations":[{"id":"T1","span":{"begin":454,"end":462},"obj":"Body_part"},{"id":"T2","span":{"begin":890,"end":898},"obj":"Body_part"},{"id":"T3","span":{"begin":1303,"end":1311},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"mat_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MAT_0000491"},{"id":"A2","pred":"mat_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MAT_0000491"},{"id":"A3","pred":"mat_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/MAT_0000491"},{"subj":"T1","pred":"source","obj":"Anatomy-MAT"},{"subj":"T2","pred":"source","obj":"Anatomy-MAT"},{"subj":"T3","pred":"source","obj":"Anatomy-MAT"}]},{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":1443,"end":1448},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0000180"},{"subj":"T1","pred":"source","obj":"Anatomy-UBERON"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"genia-medco-coref","color":"#ec93e9","default":true},{"id":"jnlpba-st-training","color":"#93ecd4"},{"id":"sentences","color":"#ecba93"},{"id":"NCBITAXON","color":"#a093ec"},{"id":"pubmed-sentences-benchmark","color":"#9fec93"},{"id":"GENIAcorpus","color":"#ec93b9"},{"id":"mondo_disease","color":"#93d3ec"},{"id":"Glycosmos6-MAT","color":"#eceb93"},{"id":"Anatomy-MAT","color":"#d193ec"},{"id":"Anatomy-UBERON","color":"#93ecb7"}]}]}}