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bionlp-st-bb3-2016-training

Id Subject Object Predicate Lexical cue
T5 112-133 Bacteria denotes Arhodomonas aquaeolei
T6 171-207 Habitat denotes petroleum reservoir production fluid
T7 171-180 Habitat denotes petroleum
T8 171-190 Habitat denotes petroleum reservoir
T9 677-688 Bacteria denotes Arhodomonas
T10 766-780 Bacteria denotes Proteobacteria
T11 851-863 Bacteria denotes A. aquaeolei
T12 891-913 Bacteria denotes purple sulfur bacteria
T13 926-944 Bacteria denotes Ectothiorhodospira
T14 949-959 Bacteria denotes Chromatium
T15 974-1000 Habitat denotes phototrophic microorganism
T16 1048-1072 Habitat denotes subterranean environment
T17 1261-1272 Bacteria denotes strain HA-1
T18 1276-1286 Bacteria denotes ATCC 49307
T1 0-111 Title denotes Arhodomonas aquaeolei gen. nov., sp. nov., an aerobic, halophilic bacterium isolated from a subterranean brine.
T2 112-1288 Paragraph denotes Arhodomonas aquaeolei gen. nov., sp. nov., isolated from a petroleum reservoir production fluid, is described. The single isolate was an obligately halophilic, aerobic, gram-negative, oval rod-shaped bacterium that was actively motile by means of a single polar flagellum. It was catalase and oxidase positive. The isolate had a specific requirement for NaCl; growth occurred at NaCl concentrations between 6 and 20%, and optimal growth occurred in the presence of 15% NaCl. This species metabolized primarily organic acids and required biotin for growth. The name Arhodomonas is proposed for the new genus, which was placed in the gamma subclass of the Proteobacteria on the basis of the results of a 16S rRNA sequence analysis. Although A. aquaeolei is most closely related to purple sulfur bacteria (the genera Ectothiorhodospira and Chromatium), it is not a phototrophic microorganism, which is consistent with its isolation from a subterranean environment. The major components of its cellular fatty acids were C16:0, C18:1, C19:0, C16:1, and C18:0 acids. The DNA base composition of the type strain is 67 mol% G+C. The type and only strain is strain HA-1 (= ATCC 49307).
T3 0-21 Bacteria denotes Arhodomonas aquaeolei
T4 92-110 Habitat denotes subterranean brine