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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 12-24 protein denotes Oct2-isoform
T2 39-82 cell_line denotes lipopolysaccharide-stimulated B lymphocytes
T3 84-96 protein denotes Oct2-isoform
T4 111-126 cell_type denotes splenic B cells
T5 256-276 cell_line denotes Oct2-positive clones
T6 357-393 protein denotes amino- or carboxy-terminal sequences
T7 414-421 DNA denotes exon 11
T8 436-473 protein denotes carboxy-terminal leucin-zipper region
T9 521-550 protein denotes proline-rich carboxy terminus
T10 558-562 DNA denotes exon
T11 620-641 DNA denotes between exons 4 and 5
T12 666-704 DNA denotes between glutamine-rich regions 2 and 3
T13 706-722 protein denotes carboxy terminal
T14 738-762 protein denotes leucine-zipper structure
T15 814-843 protein denotes Oct2a's amino terminal insert
T16 845-852 DNA denotes exon 7a
T17 858-889 protein denotes Oct2b's carboxy terminal insert
T18 891-898 DNA denotes exon 13
T19 946-952 protein denotes Oct2ab
T20 989-994 protein denotes Oct2a
T21 999-1004 protein denotes Oct2b
T22 1034-1071 cell_line denotes lipopolysaccharide-stimulated B cells
T23 1100-1106 protein denotes Oct2ab
T24 1111-1117 protein denotes Oct2ba
T25 1143-1200 cell_line denotes lipopolysaccharide plus phorbol-di-butyrate-treated cells

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-83 Sentence denotes Analysis of Oct2-isoform expression in lipopolysaccharide-stimulated B lymphocytes.
S2 84-238 Sentence denotes Oct2-isoform expression in splenic B cells stimulated with lipopolysaccharide or lipopolysaccharide plus phorbol-di-butyrate was analysed by cDNA cloning.
S3 239-308 Sentence denotes The frequency of Oct2-positive clones was 1/15,000 in both libraries.
S4 309-394 Sentence denotes Two new isoforms were found that generate novel amino- or carboxy-terminal sequences.
S5 395-551 Sentence denotes An isoform lacking exon 11 destroyed the carboxy-terminal leucin-zipper region and introduced a frame shift creating a novel, proline-rich carboxy terminus.
S6 552-642 Sentence denotes A new exon containing a highly basic region (4c) was characterized, between exons 4 and 5.
S7 643-763 Sentence denotes This exon was inserted between glutamine-rich regions 2 and 3, carboxy terminal of a tentative leucine-zipper structure.
S8 764-953 Sentence denotes In addition, a new combination isoform containing Oct2a's amino terminal insert (exon 7a) and Oct2b's carboxy terminal insert (exon 13) was found that created a novel large isoform, Oct2ab.
S9 954-1201 Sentence denotes More frequent use of the classical Oct2a and Oct2b isoforms was observed in the lipopolysaccharide-stimulated B cells, while a preference for the Oct2ab and Oct2ba isoforms was observed in lipopolysaccharide plus phorbol-di-butyrate-treated cells.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 12-35 NP denotes Oct2-isoform expression
C2 39-82 NP denotes lipopolysaccharide-stimulated B lymphocytes
C3 84-107 NP denotes Oct2-isoform expression
C4 111-208 NP denotes splenic B cells stimulated with lipopolysaccharide or lipopolysaccharide plus phorbol-di-butyrate
C5 309-325 NP denotes Two new isoforms
C6 337-341 NP denotes that
C7 552-600 NP denotes A new exon containing a highly basic region (4c)
C8 643-652 NP denotes This exon
C9 674-704 NP denotes glutamine-rich regions 2 and 3
C10 706-762 NP denotes carboxy terminal of a tentative leucine-zipper structure
C11 777-899 NP denotes a new combination isoform containing Oct2a's amino terminal insert (exon 7a) and Oct2b's carboxy terminal insert (exon 13)
C12 910-914 NP denotes that
C13 923-944 NP denotes a novel large isoform
C14 946-952 NP denotes Oct2ab
C15 1030-1071 NP denotes the lipopolysaccharide-stimulated B cells
C16 1143-1200 NP denotes lipopolysaccharide plus phorbol-di-butyrate-treated cells
R1 C3 C1 coref-ident Oct2-isoform expression,Oct2-isoform expression
R2 C6 C5 coref-relat that,Two new isoforms
R3 C8 C7 coref-ident This exon,A new exon containing a highly basic region (4c)
R4 C10 C9 coref-appos carboxy terminal of a tentative leucine-zipper structure,glutamine-rich regions 2 and 3
R5 C12 C11 coref-relat that,a new combination isoform containing Oct2a's amino terminal insert (exon 7a) and Oct2b's carboxy terminal insert (exon 13)
R6 C14 C13 coref-appos Oct2ab,a novel large isoform
R7 C15 C2 coref-ident the lipopolysaccharide-stimulated B cells,lipopolysaccharide-stimulated B lymphocytes
R8 C16 C4 coref-ident lipopolysaccharide plus phorbol-di-butyrate-treated cells,splenic B cells stimulated with lipopolysaccharide or lipopolysaccharide plus phorbol-di-butyrate

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 12-24 protein_family_or_group denotes Oct2-isoform
T2 39-57 lipid denotes lipopolysaccharide
T3 84-96 protein_family_or_group denotes Oct2-isoform
T4 111-126 cell_type denotes splenic B cells
T5 143-161 lipid denotes lipopolysaccharide
T6 165-183 lipid denotes lipopolysaccharide
T7 189-208 other_artificial_source denotes phorbol-di-butyrate
T8 225-237 other_name denotes cDNA cloning
T9 256-276 cell_line denotes Oct2-positive clones
T10 414-421 DNA_domain_or_region denotes exon 11
T11 436-473 protein_domain_or_region denotes carboxy-terminal leucin-zipper region
T12 521-528 amino_acid_monomer denotes proline
T13 558-562 DNA_domain_or_region denotes exon
T14 620-641 DNA_domain_or_region denotes between exons 4 and 5
T15 666-673 DNA_domain_or_region denotes between
T16 674-704 DNA_domain_or_region denotes glutamine-rich regions 2 and 3
T17 706-722 protein_domain_or_region denotes carboxy terminal
T18 814-819 protein_molecule denotes Oct2a
T19 845-852 DNA_domain_or_region denotes exon 7a
T20 858-863 protein_molecule denotes Oct2b
T21 891-898 DNA_domain_or_region denotes exon 13
T22 946-952 protein_molecule denotes Oct2ab
T23 989-994 protein_molecule denotes Oct2a
T24 999-1004 protein_molecule denotes Oct2b
T25 1034-1052 lipid denotes lipopolysaccharide
T26 1100-1106 protein_molecule denotes Oct2ab
T27 1111-1117 protein_molecule denotes Oct2ba
T28 1143-1161 lipid denotes lipopolysaccharide
T29 1167-1186 other_artificial_source denotes phorbol-di-butyrate