PubMed:7859743
Annnotations
DisGeNET
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T0 | 1277-1280 | gene:6898 | denotes | Tat |
| T1 | 1327-1330 | disease:C0019693 | denotes | HIV |
| T2 | 1277-1280 | gene:79969 | denotes | Tat |
| T3 | 1327-1330 | disease:C0019693 | denotes | HIV |
| T4 | 1290-1297 | gene:6898 | denotes | Tat1-72 |
| T5 | 1327-1330 | disease:C0019693 | denotes | HIV |
| T6 | 1290-1297 | gene:79969 | denotes | Tat1-72 |
| T7 | 1327-1330 | disease:C0019693 | denotes | HIV |
| T8 | 1383-1386 | gene:6647 | denotes | SOD |
| T9 | 1327-1330 | disease:C0019693 | denotes | HIV |
| T10 | 1427-1430 | gene:7124 | denotes | TNF |
| T11 | 1327-1330 | disease:C0019693 | denotes | HIV |
| R1 | T0 | T1 | associated_with | Tat,HIV |
| R2 | T2 | T3 | associated_with | Tat,HIV |
| R3 | T4 | T5 | associated_with | Tat1-72,HIV |
| R4 | T6 | T7 | associated_with | Tat1-72,HIV |
| R5 | T8 | T9 | associated_with | SOD,HIV |
| R6 | T10 | T11 | associated_with | TNF,HIV |
jnlpba-st-training
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-9 | protein | denotes | HIV-1 Tat |
| T2 | 22-25 | protein | denotes | TNF |
| T3 | 34-44 | protein | denotes | NF-kappa B |
| T4 | 140-195 | protein | denotes | human immunodeficiency virus type 1 (HIV-1) Tat protein |
| T5 | 222-243 | protein | denotes | tumor necrosis factor |
| T6 | 245-248 | protein | denotes | TNF |
| T7 | 318-328 | protein | denotes | NF-kappa B |
| T8 | 333-343 | cell_line | denotes | HeLa cells |
| T9 | 372-386 | DNA | denotes | HIV-1 tat gene |
| T10 | 388-402 | cell_line | denotes | HeLa-tat cells |
| T11 | 423-434 | protein | denotes | Tat protein |
| T12 | 449-452 | protein | denotes | TNF |
| T13 | 475-485 | protein | denotes | NF-kappa B |
| T14 | 490-493 | protein | denotes | TNF |
| T15 | 543-546 | protein | denotes | TNF |
| T16 | 590-600 | cell_line | denotes | HeLa cells |
| T17 | 622-633 | protein | denotes | Tat protein |
| T18 | 635-638 | protein | denotes | TNF |
| T19 | 662-672 | protein | denotes | NF-kappa B |
| T20 | 772-775 | protein | denotes | Tat |
| T21 | 844-851 | cell_type | denotes | T cells |
| T22 | 856-866 | cell_line | denotes | HeLa cells |
| T23 | 867-876 | protein | denotes | HIV-1 Tat |
| T24 | 906-939 | protein | denotes | Mn-dependent superoxide dismutase |
| T25 | 941-947 | protein | denotes | Mn-SOD |
| T26 | 952-972 | protein | denotes | mitochondrial enzyme |
| T27 | 1049-1055 | protein | denotes | Mn-SOD |
| T28 | 1129-1132 | protein | denotes | Tat |
| T29 | 1144-1150 | protein | denotes | Mn-SOD |
| T30 | 1277-1288 | protein | denotes | Tat protein |
| T31 | 1290-1297 | protein | denotes | Tat1-72 |
| T32 | 1327-1353 | DNA | denotes | HIV-1 long terminal repeat |
| T33 | 1355-1358 | DNA | denotes | LTR |
| T34 | 1380-1386 | protein | denotes | Mn-SOD |
| T35 | 1427-1430 | protein | denotes | TNF |
| T36 | 1497-1514 | protein | denotes | C-terminal region |
| T37 | 1518-1527 | protein | denotes | HIV-1 Tat |
| T38 | 1552-1558 | protein | denotes | Mn-SOD |
| T39 | 1653-1656 | protein | denotes | GSH |
DisGeNET5_gene_disease
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 7859743-1#73#76#gene6898 | 184-187 | gene6898 | denotes | Tat |
| 7859743-1#111#132#gene7124 | 222-243 | gene7124 | denotes | tumor necrosis factor |
| 7859743-1#134#137#gene7124 | 245-248 | gene7124 | denotes | TNF |
| 7859743-1#29#57#diseaseC3854222 | 140-168 | diseaseC3854222 | denotes | human immunodeficiency virus |
| 73#76#gene689829#57#diseaseC3854222 | 7859743-1#73#76#gene6898 | 7859743-1#29#57#diseaseC3854222 | associated_with | Tat,human immunodeficiency virus |
| 111#132#gene712429#57#diseaseC3854222 | 7859743-1#111#132#gene7124 | 7859743-1#29#57#diseaseC3854222 | associated_with | tumor necrosis factor,human immunodeficiency virus |
| 134#137#gene712429#57#diseaseC3854222 | 7859743-1#134#137#gene7124 | 7859743-1#29#57#diseaseC3854222 | associated_with | TNF,human immunodeficiency virus |
semrep-sample
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| E1-ti-1 | 0-5 | cui:C0019704 | denotes | HIV-1 |
| E2-ti-1 | 6-9 | cui:C0017375 | denotes | Tat |
| E3-ti-1 | 26-33 | cui:C0205263 | denotes | induced |
| E4-ti-1 | 34-44 | cui:C0079904 | denotes | NF-kappa B |
| E5-ti-1 | 22-55 | cui:C1519684 | denotes | TNF-induced NF-kappa B activation |
| E6-ti-1 | 60-72 | cui:C0596402 | denotes | cytotoxicity |
| E7-ti-1 | 76-84 | cui:C0205349 | denotes | altering |
| E8-ti-1 | 89-97 | cui:C0178539 | denotes | cellular |
| E9-ti-1 | 98-109 | cui:C0030012 | denotes | redox state |
| T1 | 0-9 | PART_OF | denotes | HIV-1 Tat |
| T2 | 10-21 | AUGMENTS | denotes | potentiates |
| T3 | 10-21 | AUGMENTS | denotes | potentiates |
| E1-ab-1 | 116-121 | cui:C0008972 | denotes | study |
| E2-ab-1 | 140-175 | cui:C0019704 | denotes | human immunodeficiency virus type 1 |
| E3-ab-1 | 184-195 | cui:C0039341 | denotes | Tat protein |
| E4-ab-1 | 210-218 | cui:C0439167 | denotes | activity |
| E5-ab-1 | 222-243 | cui:C1456820 | denotes | tumor necrosis factor |
| E6-ab-1 | 253-261 | cui:C0079189 | denotes | cytokine |
| E7-ab-1 | 278-283 | cui:C0019704 | denotes | HIV-1 |
| E8-ab-1 | 318-328 | cui:C0079904 | denotes | NF-kappa B |
| T4 | 140-195 | PART_OF | denotes | human immunodeficiency virus type 1 (HIV-1) Tat protein |
| T5 | 304-314 | STIMULATES | denotes | activation |
| E1-ab-2 | 333-343 | cui:C0018873 | denotes | HeLa cells |
| E2-ab-2 | 372-377 | cui:C0019704 | denotes | HIV-1 |
| E3-ab-2 | 378-386 | cui:C0017375 | denotes | tat gene |
| E4-ab-2 | 393-396 | cui:C0017375 | denotes | tat |
| E5-ab-2 | 388-402 | cui:C0018873 | denotes | HeLa-tat cells |
| E6-ab-2 | 405-415 | cui:C0185117 | denotes | expression |
| E7-ab-2 | 423-434 | cui:C0039341 | denotes | Tat protein |
| E8-ab-2 | 453-460 | cui:C0205263 | denotes | induced |
| E9-ab-2 | 449-471 | cui:C1519684 | denotes | TNF-induced activation |
| E10-ab-2 | 475-485 | cui:C0079904 | denotes | NF-kappa B |
| E11-ab-2 | 490-493 | cui:C1456820 | denotes | TNF |
| E12-ab-2 | 494-502 | cui:C0086597 | denotes | mediated |
| E13-ab-2 | 503-515 | cui:C0596402 | denotes | cytotoxicity |
| T6 | 372-386 | PART_OF | denotes | HIV-1 tat gene |
| T7 | 363-367 | PART_OF | denotes | with |
| T8 | 435-443 | AUGMENTS | denotes | enhanced |
| E1-ab-3 | 519-526 | cui:C0871364 | denotes | similar |
| E2-ab-3 | 527-539 | cui:C0279023 | denotes | potentiation |
| E3-ab-3 | 543-546 | cui:C1456820 | denotes | TNF |
| E4-ab-3 | 547-554 | cui:C1280500 | denotes | effects |
| E5-ab-3 | 571-585 | cui:C0376448 | denotes | Jurkat T cells |
| E6-ab-3 | 590-600 | cui:C0018873 | denotes | HeLa cells |
| E7-ab-3 | 622-633 | cui:C0039341 | denotes | Tat protein |
| T9 | 609-613 | PART_OF | denotes | with |
| E1-ab-4 | 639-647 | cui:C0086597 | denotes | mediated |
| E2-ab-4 | 635-658 | cui:C1519684 | denotes | TNF-mediated activation |
| E3-ab-4 | 662-672 | cui:C0079904 | denotes | NF-kappa B |
| E4-ab-4 | 677-689 | cui:C0596402 | denotes | cytotoxicity |
| E5-ab-4 | 703-716 | cui:C0178719 | denotes | intracellular |
| E6-ab-4 | 717-726 | cui:C1522492 | denotes | formation |
| E7-ab-4 | 730-759 | cui:C0920643 | denotes | reactive oxygen intermediates |
| T10 | 690-698 | ASSOCIATED_WITH | denotes | involves |
| E1-ab-5 | 772-775 | cui:C0017375 | denotes | Tat |
| E2-ab-5 | 776-784 | cui:C0086597 | denotes | mediated |
| E3-ab-5 | 785-792 | cui:C1280500 | denotes | effects |
| E4-ab-5 | 800-808 | cui:C0178539 | denotes | cellular |
| E5-ab-5 | 809-820 | cui:C0030012 | denotes | redox state |
| E1-ab-6 | 844-851 | cui:C0039194 | denotes | T cells |
| E2-ab-6 | 856-866 | cui:C0018873 | denotes | HeLa cells |
| E3-ab-6 | 867-872 | cui:C0019704 | denotes | HIV-1 |
| E4-ab-6 | 873-876 | cui:C0017375 | denotes | Tat |
| E5-ab-6 | 892-902 | cui:C0185117 | denotes | expression |
| E6-ab-6 | 906-939 | cui:C0024708 | denotes | Mn-dependent superoxide dismutase |
| E7-ab-6 | 952-965 | cui:C0521451 | denotes | mitochondrial |
| E8-ab-6 | 966-972 | cui:C0014442 | denotes | enzyme |
| E9-ab-6 | 981-985 | cui:C0449719 | denotes | part |
| E10-ab-6 | 993-1001 | cui:C0178539 | denotes | cellular |
| E11-ab-6 | 1002-1009 | cui:C0679190 | denotes | defense |
| E12-ab-6 | 1010-1016 | cui:C0449913 | denotes | system |
| E13-ab-6 | 1025-1041 | cui:C0242606 | denotes | oxidative stress |
| T11 | 867-876 | PART_OF | denotes | HIV-1 Tat |
| T12 | 877-887 | INHIBITS | denotes | suppressed |
| E1-ab-7 | 1049-1055 | cui:C0024708 | denotes | Mn-SOD |
| E2-ab-7 | 1056-1059 | cui:C0035668 | denotes | RNA |
| E3-ab-7 | 1060-1067 | cui:C0033684 | denotes | protein |
| E4-ab-7 | 1068-1074 | cui:C0441889 | denotes | levels |
| E5-ab-7 | 1079-1087 | cui:C0439167 | denotes | activity |
| E6-ab-7 | 1093-1101 | cui:C0522501 | denotes | markedly |
| E7-ab-7 | 1129-1132 | cui:C0017375 | denotes | Tat |
| T13 | 1117-1125 | COEXISTS_WITH | denotes | presence |
| E1-ab-8 | 1134-1143 | cui:C0205216 | denotes | Decreased |
| E2-ab-8 | 1144-1150 | cui:C0024708 | denotes | Mn-SOD |
| E3-ab-8 | 1151-1161 | cui:C0185117 | denotes | expression |
| E4-ab-8 | 1182-1191 | cui:C0205216 | denotes | decreased |
| E5-ab-8 | 1192-1198 | cui:C0441889 | denotes | levels |
| E6-ab-8 | 1202-1213 | cui:C0017817 | denotes | glutathione |
| E7-ab-8 | 1220-1225 | cui:C0441994 | denotes | lower |
| E8-ab-8 | 1226-1231 | cui:C0456603 | denotes | ratio |
| E9-ab-8 | 1235-1242 | cui:C0392756 | denotes | reduced |
| E10-ab-8 | 1243-1263 | cui:C0061516 | denotes | oxidized glutathione |
| T14 | 1182-1191 | INHIBITS | denotes | decreased |
| E1-ab-9 | 1277-1288 | cui:C0039341 | denotes | Tat protein |
| E2-ab-9 | 1290-1294 | entrez:116369,117247 | denotes | Tat1 |
| E3-ab-9 | 1327-1332 | cui:C0441729 | denotes | HIV-1 |
| E4-ab-9 | 1327-1353 | cui:C0079517 | denotes | HIV-1 long terminal repeat |
| E5-ab-9 | 1364-1370 | cui:C0205166 | denotes | longer |
| E6-ab-9 | 1371-1379 | cui:C0392760 | denotes | affected |
| E7-ab-9 | 1380-1386 | cui:C0024708 | denotes | Mn-SOD |
| E8-ab-9 | 1387-1397 | cui:C0185117 | denotes | expression |
| E9-ab-9 | 1403-1411 | cui:C0178539 | denotes | cellular |
| E10-ab-9 | 1412-1423 | cui:C0030012 | denotes | redox state |
| E11-ab-9 | 1427-1430 | cui:C1456820 | denotes | TNF |
| E12-ab-9 | 1431-1439 | cui:C0086597 | denotes | mediated |
| E13-ab-9 | 1440-1452 | cui:C0596402 | denotes | cytotoxicity |
| E1-ab-10 | 1464-1475 | cui:C0681814 | denotes | experiments |
| E2-ab-10 | 1499-1507 | cui:C0205088 | denotes | terminal |
| E3-ab-10 | 1508-1514 | cui:C0205147 | denotes | region |
| E4-ab-10 | 1518-1523 | cui:C0019704 | denotes | HIV-1 |
| E5-ab-10 | 1524-1527 | cui:C0017375 | denotes | Tat |
| E6-ab-10 | 1552-1558 | cui:C0024708 | denotes | Mn-SOD |
| E7-ab-10 | 1559-1569 | cui:C0185117 | denotes | expression |
| E8-ab-10 | 1588-1597 | cui:C0311404 | denotes | oxidative |
| E9-ab-10 | 1598-1608 | cui:C0348080 | denotes | conditions |
| E10-ab-10 | 1632-1651 | cui:C0034917 | denotes | reduced glutathione |
| E11-ab-10 | 1684-1688 | cui:C0061516 | denotes | GSSG |
| E12-ab-10 | 1690-1695 | cui:C0456603 | denotes | ratio |
| T15 | 1518-1527 | PART_OF | denotes | HIV-1 Tat |
| T16 | 1543-1551 | INHIBITS | denotes | suppress |
| R1 | E2-ti-1 | T1 | subjectOf | Tat,HIV-1 Tat |
| R2 | E1-ti-1 | T1 | objectOf | HIV-1,HIV-1 Tat |
| R3 | E2-ti-1 | T2 | subjectOf | Tat,potentiates |
| R4 | E5-ti-1 | T2 | objectOf | TNF-induced NF-kappa B activation,potentiates |
| R5 | E2-ti-1 | T3 | subjectOf | Tat,potentiates |
| R6 | E6-ti-1 | T3 | objectOf | cytotoxicity,potentiates |
| R7 | E3-ab-1 | T4 | subjectOf | Tat protein,human immunodeficiency virus type 1 (HIV-1) Tat protein |
| R8 | E2-ab-1 | T4 | objectOf | human immunodeficiency virus type 1,human immunodeficiency virus type 1 (HIV-1) Tat protein |
| R9 | E6-ab-1 | T5 | subjectOf | cytokine,activation |
| R10 | E8-ab-1 | T5 | objectOf | NF-kappa B,activation |
| R11 | E3-ab-2 | T6 | subjectOf | tat gene,HIV-1 tat gene |
| R12 | E2-ab-2 | T6 | objectOf | HIV-1,HIV-1 tat gene |
| R13 | E3-ab-2 | T7 | subjectOf | tat gene,with |
| R14 | E1-ab-2 | T7 | objectOf | HeLa cells,with |
| R15 | E7-ab-2 | T8 | subjectOf | Tat protein,enhanced |
| R16 | E9-ab-2 | T8 | objectOf | TNF-induced activation,enhanced |
| R17 | E7-ab-3 | T9 | subjectOf | Tat protein,with |
| R18 | E6-ab-3 | T9 | objectOf | HeLa cells,with |
| R19 | E7-ab-4 | T10 | subjectOf | reactive oxygen intermediates,involves |
| R20 | E4-ab-4 | T10 | objectOf | cytotoxicity,involves |
| R21 | E4-ab-6 | T11 | subjectOf | Tat,HIV-1 Tat |
| R22 | E3-ab-6 | T11 | objectOf | HIV-1,HIV-1 Tat |
| R23 | E4-ab-6 | T12 | subjectOf | Tat,suppressed |
| R24 | E6-ab-6 | T12 | objectOf | Mn-dependent superoxide dismutase,suppressed |
| R25 | E2-ab-7 | T13 | subjectOf | RNA,presence |
| R26 | E7-ab-7 | T13 | objectOf | Tat,presence |
| R27 | E2-ab-8 | T14 | subjectOf | Mn-SOD,decreased |
| R28 | E6-ab-8 | T14 | objectOf | glutathione,decreased |
| R29 | E5-ab-10 | T15 | subjectOf | Tat,HIV-1 Tat |
| R30 | E4-ab-10 | T15 | objectOf | HIV-1,HIV-1 Tat |
| R31 | E5-ab-10 | T16 | subjectOf | Tat,suppress |
| R32 | E6-ab-10 | T16 | objectOf | Mn-SOD,suppress |
pubmed-sentences-benchmark
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| S1 | 0-110 | Sentence | denotes | HIV-1 Tat potentiates TNF-induced NF-kappa B activation and cytotoxicity by altering the cellular redox state. |
| S2 | 111-329 | Sentence | denotes | This study demonstrates that human immunodeficiency virus type 1 (HIV-1) Tat protein amplifies the activity of tumor necrosis factor (TNF), a cytokine that stimulates HIV-1 replication through activation of NF-kappa B. |
| S3 | 330-516 | Sentence | denotes | In HeLa cells stably transfected with the HIV-1 tat gene (HeLa-tat cells), expression of the Tat protein enhanced both TNF-induced activation of NF-kappa B and TNF-mediated cytotoxicity. |
| S4 | 517-634 | Sentence | denotes | A similar potentiation of TNF effects was observed in Jurkat T cells and HeLa cells treated with soluble Tat protein. |
| S5 | 635-760 | Sentence | denotes | TNF-mediated activation of NF-kappa B and cytotoxicity involves the intracellular formation of reactive oxygen intermediates. |
| S6 | 761-835 | Sentence | denotes | Therefore, Tat-mediated effects on the cellular redox state were analyzed. |
| S7 | 836-1042 | Sentence | denotes | In both T cells and HeLa cells HIV-1 Tat suppressed the expression of Mn-dependent superoxide dismutase (Mn-SOD), a mitochondrial enzyme that is part of the cellular defense system against oxidative stress. |
| S8 | 1043-1133 | Sentence | denotes | Thus, Mn-SOD RNA protein levels and activity were markedly reduced in the presence of Tat. |
| S9 | 1134-1264 | Sentence | denotes | Decreased Mn-SOD expression was associated with decreased levels of glutathione and a lower ratio of reduced:oxidized glutathione. |
| S10 | 1265-1453 | Sentence | denotes | A truncated Tat protein (Tat1-72), known to transactivate the HIV-1 long terminal repeat (LTR), no longer affected Mn-SOD expression, the cellular redox state or TNF-mediated cytotoxicity. |
| S11 | 1454-1696 | Sentence | denotes | Thus, our experiments demonstrate that the C-terminal region of HIV-1 Tat is required to suppress Mn-SOD expression and to induce pro-oxidative conditions reflected by a drop in reduced glutathione (GSH) and the GSH:oxidized GSH (GSSG) ratio. |
| S12 | 1696-1729 | Sentence | denotes | (ABSTRACT TRUNCATED AT 250 WORDS) |
genia-medco-coref
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| C1 | 0-9 | NP | denotes | HIV-1 Tat |
| C2 | 22-72 | NP | denotes | TNF-induced NF-kappa B activation and cytotoxicity |
| C3 | 85-109 | NP | denotes | the cellular redox state |
| C4 | 140-195 | NP | denotes | human immunodeficiency virus type 1 (HIV-1) Tat protein |
| C5 | 222-249 | NP | denotes | tumor necrosis factor (TNF) |
| C7 | 253-261 | NP | denotes | cytokine |
| C8 | 262-266 | NP | denotes | that |
| C6 | 251-328 | NP | denotes | a cytokine that stimulates HIV-1 replication through activation of NF-kappa B |
| C9 | 368-403 | NP | denotes | the HIV-1 tat gene (HeLa-tat cells) |
| C10 | 419-434 | NP | denotes | the Tat protein |
| C12 | 490-515 | NP | denotes | TNF-mediated cytotoxicity |
| C11 | 444-515 | NP | denotes | both TNF-induced activation of NF-kappa B and TNF-mediated cytotoxicity |
| C13 | 571-600 | NP | denotes | Jurkat T cells and HeLa cells |
| C14 | 635-689 | NP | denotes | TNF-mediated activation of NF-kappa B and cytotoxicity |
| C15 | 796-820 | NP | denotes | the cellular redox state |
| C16 | 839-866 | NP | denotes | both T cells and HeLa cells |
| C17 | 867-876 | NP | denotes | HIV-1 Tat |
| C19 | 906-948 | NP | denotes | Mn-dependent superoxide dismutase (Mn-SOD) |
| C18 | 888-948 | NP | denotes | the expression of Mn-dependent superoxide dismutase (Mn-SOD) |
| C21 | 950-972 | NP | denotes | a mitochondrial enzyme |
| C22 | 973-977 | NP | denotes | that |
| C20 | 950-1041 | NP | denotes | a mitochondrial enzyme that is part of the cellular defense system against oxidative stress |
| C23 | 1129-1132 | NP | denotes | Tat |
| C24 | 1265-1298 | NP | denotes | A truncated Tat protein (Tat1-72) |
| C25 | 1300-1359 | NP | denotes | known to transactivate the HIV-1 long terminal repeat (LTR) |
| C26 | 1380-1397 | NP | denotes | Mn-SOD expression |
| C27 | 1399-1423 | NP | denotes | the cellular redox state |
| C28 | 1427-1452 | NP | denotes | TNF-mediated cytotoxicity |
| C29 | 1518-1527 | NP | denotes | HIV-1 Tat |
| C30 | 1552-1569 | NP | denotes | Mn-SOD expression |
| R1 | C8 | C7 | coref-relat | that,cytokine |
| R2 | C6 | C5 | coref-appos | a cytokine that stimulates HIV-1 replication through activation of NF-kappa B,tumor necrosis factor (TNF) |
| R3 | C9 | C1 | coref-ident | the HIV-1 tat gene (HeLa-tat cells),HIV-1 Tat |
| R4 | C10 | C4 | coref-ident | the Tat protein,human immunodeficiency virus type 1 (HIV-1) Tat protein |
| R5 | C11 | C2 | coref-ident | both TNF-induced activation of NF-kappa B and TNF-mediated cytotoxicity,TNF-induced NF-kappa B activation and cytotoxicity |
| R6 | C14 | C11 | coref-ident | TNF-mediated activation of NF-kappa B and cytotoxicity,both TNF-induced activation of NF-kappa B and TNF-mediated cytotoxicity |
| R7 | C15 | C3 | coref-ident | the cellular redox state,the cellular redox state |
| R8 | C16 | C13 | coref-ident | both T cells and HeLa cells,Jurkat T cells and HeLa cells |
| R9 | C17 | C9 | coref-ident | HIV-1 Tat,the HIV-1 tat gene (HeLa-tat cells) |
| R10 | C22 | C21 | coref-relat | that,a mitochondrial enzyme |
| R11 | C20 | C19 | coref-appos | a mitochondrial enzyme that is part of the cellular defense system against oxidative stress,Mn-dependent superoxide dismutase (Mn-SOD) |
| R12 | C23 | C10 | coref-ident | Tat,the Tat protein |
| R13 | C25 | C24 | coref-appos | known to transactivate the HIV-1 long terminal repeat (LTR),A truncated Tat protein (Tat1-72) |
| R14 | C26 | C18 | coref-ident | Mn-SOD expression,the expression of Mn-dependent superoxide dismutase (Mn-SOD) |
| R15 | C27 | C15 | coref-ident | the cellular redox state,the cellular redox state |
| R16 | C28 | C12 | coref-ident | TNF-mediated cytotoxicity,TNF-mediated cytotoxicity |
| R17 | C29 | C9 | coref-ident | HIV-1 Tat,the HIV-1 tat gene (HeLa-tat cells) |
| R18 | C30 | C26 | coref-ident | Mn-SOD expression,Mn-SOD expression |
GENIAcorpus
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-5 | virus | denotes | HIV-1 |
| T2 | 22-25 | protein_family_or_group | denotes | TNF |
| T3 | 34-44 | protein_molecule | denotes | NF-kappa B |
| T4 | 60-72 | other_name | denotes | cytotoxicity |
| T5 | 140-175 | virus | denotes | human immunodeficiency virus type 1 |
| T6 | 177-182 | virus | denotes | HIV-1 |
| T7 | 222-243 | protein_family_or_group | denotes | tumor necrosis factor |
| T8 | 245-248 | protein_molecule | denotes | TNF |
| T9 | 278-283 | virus | denotes | HIV-1 |
| T10 | 318-328 | protein_molecule | denotes | NF-kappa B |
| T11 | 333-343 | cell_line | denotes | HeLa cells |
| T12 | 372-377 | virus | denotes | HIV-1 |
| T13 | 388-402 | cell_line | denotes | HeLa-tat cells |
| T14 | 423-434 | protein_molecule | denotes | Tat protein |
| T15 | 449-452 | protein_molecule | denotes | TNF |
| T16 | 475-485 | protein_molecule | denotes | NF-kappa B |
| T17 | 490-493 | protein_molecule | denotes | TNF |
| T18 | 543-546 | protein_molecule | denotes | TNF |
| T19 | 590-600 | cell_line | denotes | HeLa cells |
| T20 | 622-633 | protein_molecule | denotes | Tat protein |
| T21 | 635-638 | protein_molecule | denotes | TNF |
| T22 | 662-672 | protein_molecule | denotes | NF-kappa B |
| T23 | 730-759 | inorganic | denotes | reactive oxygen intermediates |
| T24 | 772-775 | protein_molecule | denotes | Tat |
| T25 | 800-820 | other_name | denotes | cellular redox state |
| T26 | 844-851 | cell_type | denotes | T cells |
| T27 | 856-866 | cell_line | denotes | HeLa cells |
| T28 | 867-872 | virus | denotes | HIV-1 |
| T29 | 906-939 | protein_molecule | denotes | Mn-dependent superoxide dismutase |
| T30 | 941-947 | protein_molecule | denotes | Mn-SOD |
| T31 | 952-972 | protein_molecule | denotes | mitochondrial enzyme |
| T32 | 1025-1041 | other_name | denotes | oxidative stress |
| T33 | 1049-1055 | protein_molecule | denotes | Mn-SOD |
| T34 | 1129-1132 | protein_molecule | denotes | Tat |
| T35 | 1144-1150 | protein_molecule | denotes | Mn-SOD |
| T36 | 1202-1213 | peptide | denotes | glutathione |
| T37 | 1252-1263 | peptide | denotes | glutathione |
| T38 | 1277-1280 | protein_molecule | denotes | Tat |
| T39 | 1290-1297 | protein_molecule | denotes | Tat1-72 |
| T40 | 1327-1332 | virus | denotes | HIV-1 |
| T41 | 1355-1358 | DNA_domain_or_region | denotes | LTR |
| T42 | 1380-1386 | protein_molecule | denotes | Mn-SOD |
| T43 | 1403-1423 | other_name | denotes | cellular redox state |
| T44 | 1427-1430 | protein_molecule | denotes | TNF |
| T45 | 1497-1514 | protein_domain_or_region | denotes | C-terminal region |
| T46 | 1518-1523 | virus | denotes | HIV-1 |
| T47 | 1524-1527 | protein_molecule | denotes | Tat |
| T48 | 1552-1558 | protein_molecule | denotes | Mn-SOD |
| T49 | 1640-1651 | peptide | denotes | glutathione |
| T50 | 1653-1656 | protein_molecule | denotes | GSH |
| T51 | 1666-1678 | other_name | denotes | GSH:oxidized |
| T52 | 1679-1682 | peptide | denotes | GSH |
| T53 | 1684-1688 | peptide | denotes | GSSG |
metamap-sample
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1519-1524 | C0019704 | denotes | IV-1 |
| T2 | 868-873 | C0019704 | denotes | IV-1 |
| T3 | 373-378 | C0019704 | denotes | IV-1 |
| T4 | 279-284 | C0019704 | denotes | IV-1 |
| T5 | 141-176 | C0019704 | denotes | uman immunodeficiency virus type 1 |
| T6 | 1-6 | C0019704 | denotes | IV-1 |
| T7 | 1413-1424 | C0030012 | denotes | edox state |
| T8 | 810-820 | C0030012 | denotes | edox state |
| T9 | 99-110 | C0030012 | denotes | edox state. |
| T10 | 35-45 | C0079904 | denotes | F-kappa B |
| T11 | 1441-1453 | C0596402 | denotes | ytotoxicity. |
| T12 | 678-690 | C0596402 | denotes | ytotoxicity |
| T13 | 504-516 | C0596402 | denotes | ytotoxicity. |
| T14 | 61-73 | C0596402 | denotes | ytotoxicity |
| T15 | 1578-1584 | C0205263 | denotes | nduce |
| T16 | 454-461 | C0205263 | denotes | nduced |
| T17 | 27-34 | C0205263 | denotes | nduced |
| T18 | 1404-1412 | C0007634 | denotes | ellular |
| T19 | 994-1002 | C0007634 | denotes | ellular |
| T20 | 801-809 | C0007634 | denotes | ellular |
| T21 | 90-98 | C0007634 | denotes | ellular |
| T22 | 77-85 | C0392747 | denotes | ltering |
| T23 | 1553-1559 | C0968147 | denotes | n-SOD |
| T24 | 1381-1387 | C0968147 | denotes | n-SOD |
| T25 | 1145-1151 | C0968147 | denotes | n-SOD |
| T26 | 1050-1056 | C0968147 | denotes | n-SOD |
| T27 | 857-867 | C0018873 | denotes | eLa cells |
| T28 | 591-601 | C0018873 | denotes | eLa cells |
| T29 | 1278-1288 | C0039341 | denotes | at protein |
| T30 | 623-634 | C0039341 | denotes | at protein. |
| T31 | 845-852 | C0039194 | denotes | cells |
| T32 | 1203-1213 | C0017817 | denotes | lutathione |
| T33 | 1685-1689 | C0061516 | denotes | SSG) |
| T34 | 1244-1264 | C0061516 | denotes | xidized glutathione. |
| T35 | 379-387 | C0017375 | denotes | at gene |
| T36 | 1328-1354 | C0079517 | denotes | IV-1 long terminal repeat |
| T37 | 953-966 | C0026237 | denotes | itochondrial |
| T38 | 1428-1431 | C1323304 | denotes | NF- |
| T39 | 636-639 | C1323304 | denotes | NF- |
| T40 | 223-244 | C1323304 | denotes | umor necrosis factor |
| T41 | 1553-1559 | C0851827 | denotes | n-SOD |
| T42 | 1381-1387 | C0851827 | denotes | n-SOD |
| T43 | 1145-1151 | C0851827 | denotes | n-SOD |
| T44 | 1050-1056 | C0851827 | denotes | n-SOD |
| T45 | 910-919 | C0851827 | denotes | ependent |
| T46 | 1585-1588 | C0033382 | denotes | ro- |
| T47 | 1307-1309 | C1883351 | denotes | o |
| T48 | 1560-1570 | C0185117 | denotes | xpression |
| T49 | 1388-1398 | C0185117 | denotes | xpression, |
| T50 | 1152-1162 | C0185117 | denotes | xpression |
| T51 | 893-902 | C0185117 | denotes | xpression |
| T52 | 1026-1042 | C0242606 | denotes | xidative stress. |
| T53 | 1633-1652 | C0034917 | denotes | educed glutathione |
| T54 | 254-262 | C0079189 | denotes | ytokine |
| T55 | 1432-1439 | C0127400 | denotes | ediated |
| T56 | 777-785 | C0127400 | denotes | ediated |
| T57 | 640-648 | C0127400 | denotes | ediated |
| T58 | 495-502 | C0127400 | denotes | ediated |
| T59 | 285-296 | C0598312 | denotes | eplication |
| T60 | 462-486 | C1749855 | denotes | ctivation of NF-kappa B |
| T61 | 305-329 | C1749855 | denotes | ctivation of NF-kappa B. |
| T62 | 1544-1552 | C1260953 | denotes | uppress |
| T63 | 878-888 | C1260953 | denotes | uppressed |
| T64 | 1057-1059 | C0035668 | denotes | NA |
| T65 | 1691-1696 | C0456603 | denotes | atio. |
| T66 | 1227-1232 | C0456603 | denotes | atio |
| T67 | 1080-1088 | C1561536 | denotes | ctivity |
| T68 | 211-219 | C1561536 | denotes | ctivity |
| T69 | 1135-1144 | C0205216 | denotes | ecreased |
| T70 | 1183-1192 | C0205216 | denotes | ecreased |
| T71 | 1236-1243 | C0392756 | denotes | educed: |
| T72 | 1103-1110 | C0392756 | denotes | educed |
| T73 | 786-793 | C1280500 | denotes | ffects |
| T74 | 548-555 | C1280500 | denotes | ffects |
| T75 | 967-973 | C0014442 | denotes | nzyme |
| T76 | 627-634 | C0033684 | denotes | rotein. |
| T77 | 718-727 | C0220781 | denotes | ormation |
| T78 | 827-835 | C0936012 | denotes | nalyzed. |
| T79 | 436-444 | C2349975 | denotes | nhanced |
| T80 | 1301-1306 | C0205309 | denotes | nown |
| T81 | 1094-1102 | C0522501 | denotes | arkedly |
| T82 | 1532-1540 | C1514873 | denotes | equired |
| T83 | 117-122 | C2603343 | denotes | tudy |
| T84 | 1465-1476 | C0681814 | denotes | xperiments |
| T85 | 1291-1295 | C1422674 | denotes | at1- |
| T86 | 615-626 | C1420590 | denotes | oluble Tat |
| T87 | 602-614 | C0332293 | denotes | reated with |
| T88 | 1599-1609 | C1705253 | denotes | onditions |
| T89 | 1167-1182 | C0332281 | denotes | ssociated with |
| T90 | 982-989 | C1292711 | denotes | art of |
| T91 | 1061-1075 | C0428479 | denotes | rotein levels |
| T92 | 1625-1629 | C2348338 | denotes | rop |
| T93 | 1610-1619 | C0558058 | denotes | eflected |
| T94 | 560-568 | C1441672 | denotes | bserved |
| T95 | 615-622 | C1749467 | denotes | oluble |
| T96 | 1498-1508 | C1707271 | denotes | -terminal |
| T97 | 1193-1199 | C0441889 | denotes | evels |
| T98 | 1118-1126 | C0392148 | denotes | resence |
| T99 | 528-540 | C0279023 | denotes | otentiation |
| T100 | 1509-1515 | C0205147 | denotes | egion |
| T101 | 1589-1597 | C0311404 | denotes | xidative |
| T102 | 1328-1333 | C0441729 | denotes | IV-1 |
| T103 | 1372-1380 | C0392760 | denotes | ffected |
| T104 | 1671-1679 | C0030011 | denotes | xidized |
| T105 | 544-547 | C0333516 | denotes | NF |
| T106 | 1365-1370 | C0205166 | denotes | onger |
| T107 | 1221-1226 | C0441994 | denotes | ower |
| T108 | 1003-1010 | C1880266 | denotes | efense |
| T109 | 1011-1017 | C0449913 | denotes | ystem |
| T110 | 704-717 | C0178719 | denotes | ntracellular |
| T111 | 520-527 | C2348205 | denotes | imilar |
| T112 | 445-449 | C0238767 | denotes | oth |