PubMed:7859290
Annnotations
jnlpba-st-training
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pubmed-sentences-benchmark
{"project":"pubmed-sentences-benchmark","denotations":[{"id":"S1","span":{"begin":0,"end":142},"obj":"Sentence"},{"id":"S2","span":{"begin":143,"end":379},"obj":"Sentence"},{"id":"S3","span":{"begin":380,"end":556},"obj":"Sentence"},{"id":"S4","span":{"begin":557,"end":722},"obj":"Sentence"},{"id":"S5","span":{"begin":723,"end":884},"obj":"Sentence"},{"id":"S6","span":{"begin":885,"end":1041},"obj":"Sentence"},{"id":"S7","span":{"begin":1042,"end":1144},"obj":"Sentence"}],"text":"OBF-1, a novel B cell-specific coactivator that stimulates immunoglobulin promoter activity through association with octamer-binding proteins.\nRecent biochemical and genetic studies indicate that in addition to the octamer-binding proteins Oct-1 and Oct-2, other B cell components are required for lymphoid-restricted, octamer site-mediated immunoglobulin gene promoter activity. Using a genetic screen in yeast, we have isolated B cell-derived cDNAs encoding Oct-binding factor 1 (OBF-1), a novel protein that specifically associates with Oct-1 and Oct-2. Biochemical studies demonstrate that OBF-1 has no intrinsic DNA-binding activity and recognizes the POU domains of Oct-1 and Oct-2, but not those of Oct-4 and Oct-6. The OBF-1 mRNA is expressed in a highly cell-specific manner, being most abundant in B cells and essentially absent in most of the other cells or tissues tested. Furthermore, expression of OBF-1 in HeLa cells selectively stimulates the activity of a natural immunoglobulin promoter in an octamer site-dependent manner. Thus, OBF-1 has all the properties expected for a B cell-specific transcriptional coactivator protein."}
genia-medco-coref
{"project":"genia-medco-coref","denotations":[{"id":"C1","span":{"begin":0,"end":5},"obj":"NP"},{"id":"C3","span":{"begin":7,"end":42},"obj":"NP"},{"id":"C4","span":{"begin":43,"end":47},"obj":"NP"},{"id":"C2","span":{"begin":7,"end":141},"obj":"NP"},{"id":"C5","span":{"begin":211,"end":255},"obj":"NP"},{"id":"C6","span":{"begin":460,"end":488},"obj":"NP"},{"id":"C8","span":{"begin":490,"end":505},"obj":"NP"},{"id":"C9","span":{"begin":506,"end":510},"obj":"NP"},{"id":"C10","span":{"begin":540,"end":555},"obj":"NP"},{"id":"C7","span":{"begin":490,"end":555},"obj":"NP"},{"id":"C11","span":{"begin":594,"end":599},"obj":"NP"},{"id":"C12","span":{"begin":653,"end":668},"obj":"NP"},{"id":"C13","span":{"begin":672,"end":687},"obj":"NP"},{"id":"C14","span":{"begin":697,"end":702},"obj":"NP"},{"id":"C15","span":{"begin":912,"end":917},"obj":"NP"},{"id":"C16","span":{"begin":1048,"end":1053},"obj":"NP"},{"id":"C17","span":{"begin":1090,"end":1143},"obj":"NP"}],"relations":[{"id":"R1","pred":"coref-relat","subj":"C4","obj":"C3"},{"id":"R2","pred":"coref-appos","subj":"C2","obj":"C1"},{"id":"R3","pred":"coref-relat","subj":"C9","obj":"C8"},{"id":"R4","pred":"coref-ident","subj":"C10","obj":"C5"},{"id":"R5","pred":"coref-appos","subj":"C7","obj":"C6"},{"id":"R6","pred":"coref-ident","subj":"C11","obj":"C6"},{"id":"R7","pred":"coref-ident","subj":"C13","obj":"C10"},{"id":"R8","pred":"coref-pron","subj":"C14","obj":"C12"},{"id":"R9","pred":"coref-ident","subj":"C15","obj":"C11"},{"id":"R10","pred":"coref-ident","subj":"C16","obj":"C15"},{"id":"R11","pred":"coref-ident","subj":"C17","obj":"C3"}],"text":"OBF-1, a novel B cell-specific coactivator that stimulates immunoglobulin promoter activity through association with octamer-binding proteins.\nRecent biochemical and genetic studies indicate that in addition to the octamer-binding proteins Oct-1 and Oct-2, other B cell components are required for lymphoid-restricted, octamer site-mediated immunoglobulin gene promoter activity. Using a genetic screen in yeast, we have isolated B cell-derived cDNAs encoding Oct-binding factor 1 (OBF-1), a novel protein that specifically associates with Oct-1 and Oct-2. Biochemical studies demonstrate that OBF-1 has no intrinsic DNA-binding activity and recognizes the POU domains of Oct-1 and Oct-2, but not those of Oct-4 and Oct-6. The OBF-1 mRNA is expressed in a highly cell-specific manner, being most abundant in B cells and essentially absent in most of the other cells or tissues tested. Furthermore, expression of OBF-1 in HeLa cells selectively stimulates the activity of a natural immunoglobulin promoter in an octamer site-dependent manner. Thus, OBF-1 has all the properties expected for a B cell-specific transcriptional coactivator protein."}
GENIAcorpus
{"project":"GENIAcorpus","denotations":[{"id":"T1","span":{"begin":0,"end":5},"obj":"protein_molecule"},{"id":"T2","span":{"begin":9,"end":42},"obj":"protein_family_or_group"},{"id":"T3","span":{"begin":59,"end":82},"obj":"DNA_domain_or_region"},{"id":"T4","span":{"begin":117,"end":141},"obj":"protein_family_or_group"},{"id":"T5","span":{"begin":215,"end":239},"obj":"protein_family_or_group"},{"id":"T6","span":{"begin":240,"end":245},"obj":"protein_molecule"},{"id":"T7","span":{"begin":250,"end":255},"obj":"protein_molecule"},{"id":"T8","span":{"begin":263,"end":280},"obj":"protein_family_or_group"},{"id":"T9","span":{"begin":298,"end":340},"obj":"other_name"},{"id":"T10","span":{"begin":341,"end":369},"obj":"DNA_domain_or_region"},{"id":"T11","span":{"begin":430,"end":450},"obj":"DNA_family_or_group"},{"id":"T12","span":{"begin":460,"end":480},"obj":"protein_molecule"},{"id":"T13","span":{"begin":482,"end":487},"obj":"protein_molecule"},{"id":"T14","span":{"begin":540,"end":545},"obj":"protein_molecule"},{"id":"T15","span":{"begin":550,"end":555},"obj":"protein_molecule"},{"id":"T16","span":{"begin":594,"end":599},"obj":"protein_molecule"},{"id":"T17","span":{"begin":657,"end":668},"obj":"protein_domain_or_region"},{"id":"T18","span":{"begin":672,"end":677},"obj":"protein_molecule"},{"id":"T19","span":{"begin":682,"end":687},"obj":"protein_molecule"},{"id":"T20","span":{"begin":706,"end":711},"obj":"protein_molecule"},{"id":"T21","span":{"begin":716,"end":721},"obj":"protein_molecule"},{"id":"T22","span":{"begin":727,"end":732},"obj":"protein_molecule"},{"id":"T23","span":{"begin":808,"end":815},"obj":"cell_type"},{"id":"T24","span":{"begin":912,"end":917},"obj":"protein_molecule"},{"id":"T25","span":{"begin":921,"end":931},"obj":"cell_line"},{"id":"T26","span":{"begin":981,"end":1004},"obj":"DNA_domain_or_region"},{"id":"T27","span":{"begin":1011,"end":1023},"obj":"DNA_domain_or_region"},{"id":"T28","span":{"begin":1048,"end":1053},"obj":"protein_molecule"},{"id":"T29","span":{"begin":1092,"end":1143},"obj":"protein_family_or_group"}],"text":"OBF-1, a novel B cell-specific coactivator that stimulates immunoglobulin promoter activity through association with octamer-binding proteins.\nRecent biochemical and genetic studies indicate that in addition to the octamer-binding proteins Oct-1 and Oct-2, other B cell components are required for lymphoid-restricted, octamer site-mediated immunoglobulin gene promoter activity. Using a genetic screen in yeast, we have isolated B cell-derived cDNAs encoding Oct-binding factor 1 (OBF-1), a novel protein that specifically associates with Oct-1 and Oct-2. Biochemical studies demonstrate that OBF-1 has no intrinsic DNA-binding activity and recognizes the POU domains of Oct-1 and Oct-2, but not those of Oct-4 and Oct-6. The OBF-1 mRNA is expressed in a highly cell-specific manner, being most abundant in B cells and essentially absent in most of the other cells or tissues tested. Furthermore, expression of OBF-1 in HeLa cells selectively stimulates the activity of a natural immunoglobulin promoter in an octamer site-dependent manner. Thus, OBF-1 has all the properties expected for a B cell-specific transcriptional coactivator protein."}
bionlp-st-gro-2013-training
{"project":"bionlp-st-gro-2013-training","denotations":[{"id":"T1","span":{"begin":0,"end":5},"obj":"Protein"},{"id":"T2","span":{"begin":15,"end":21},"obj":"Cell"},{"id":"T3","span":{"begin":31,"end":42},"obj":"TranscriptionCoactivator"},{"id":"T5","span":{"begin":59,"end":73},"obj":"Gene"},{"id":"T6","span":{"begin":74,"end":82},"obj":"Promoter"},{"id":"T14","span":{"begin":240,"end":245},"obj":"Protein"},{"id":"T15","span":{"begin":250,"end":255},"obj":"Protein"},{"id":"T16","span":{"begin":263,"end":269},"obj":"Cell"},{"id":"T17","span":{"begin":319,"end":331},"obj":"DNARegion"},{"id":"T19","span":{"begin":341,"end":360},"obj":"Gene"},{"id":"T20","span":{"begin":361,"end":369},"obj":"Promoter"},{"id":"T21","span":{"begin":430,"end":436},"obj":"Cell"},{"id":"T22","span":{"begin":445,"end":450},"obj":"DNA"},{"id":"T23","span":{"begin":460,"end":480},"obj":"Protein"},{"id":"T24","span":{"begin":482,"end":487},"obj":"Protein"},{"id":"T25","span":{"begin":498,"end":505},"obj":"Protein"},{"id":"T27","span":{"begin":540,"end":545},"obj":"Protein"},{"id":"T28","span":{"begin":550,"end":555},"obj":"Protein"},{"id":"T29","span":{"begin":594,"end":599},"obj":"Protein"},{"id":"T31","span":{"begin":657,"end":668},"obj":"ProteinDomain"},{"id":"T32","span":{"begin":672,"end":677},"obj":"Protein"},{"id":"T33","span":{"begin":682,"end":687},"obj":"Protein"},{"id":"T34","span":{"begin":727,"end":732},"obj":"Protein"},{"id":"T35","span":{"begin":733,"end":737},"obj":"MessengerRNA"},{"id":"T37","span":{"begin":763,"end":767},"obj":"Cell"},{"id":"T38","span":{"begin":808,"end":815},"obj":"Cell"},{"id":"T39","span":{"begin":860,"end":865},"obj":"Cell"},{"id":"T40","span":{"begin":869,"end":876},"obj":"Tissue"},{"id":"T42","span":{"begin":912,"end":917},"obj":"Protein"},{"id":"T43","span":{"begin":921,"end":931},"obj":"Cell"},{"id":"T45","span":{"begin":981,"end":995},"obj":"Gene"},{"id":"T46","span":{"begin":996,"end":1004},"obj":"Promoter"},{"id":"T47","span":{"begin":1011,"end":1023},"obj":"DNARegion"},{"id":"T48","span":{"begin":1048,"end":1053},"obj":"Protein"},{"id":"T49","span":{"begin":1092,"end":1098},"obj":"Cell"},{"id":"T50","span":{"begin":1108,"end":1143},"obj":"TranscriptionCoactivator"},{"id":"T8","span":{"begin":117,"end":141},"obj":"Protein"},{"id":"T9","span":{"begin":215,"end":239},"obj":"Protein"},{"id":"E1","span":{"begin":48,"end":58},"obj":"Increase"},{"id":"E2","span":{"begin":100,"end":111},"obj":"BindingToProtein"},{"id":"E5","span":{"begin":332,"end":340},"obj":"RegulatoryProcess"},{"id":"E6","span":{"begin":524,"end":534},"obj":"BindingToProtein"},{"id":"E8","span":{"begin":741,"end":750},"obj":"TranscriptionOfGene"},{"id":"E9","span":{"begin":898,"end":908},"obj":"GeneExpression"},{"id":"E10","span":{"begin":944,"end":954},"obj":"Increase"}],"relations":[{"id":"R1","pred":"hasPart","subj":"T5","obj":"T6"},{"id":"R2","pred":"encodes","subj":"T22","obj":"T23"},{"id":"R3","pred":"hasPart","subj":"T32","obj":"T31"},{"id":"R4","pred":"hasPart","subj":"T33","obj":"T31"},{"id":"R5","pred":"encodes","subj":"T35","obj":"T34"},{"id":"R6","pred":"locatedIn","subj":"E8","obj":"T37"},{"id":"R7","pred":"locatedIn","subj":"E8","obj":"T38"},{"id":"R8","pred":"locatedIn","subj":"E9","obj":"T43"},{"id":"R9","pred":"hasPart","subj":"T45","obj":"T46"},{"id":"R10","pred":"locatedIn","subj":"T3","obj":"T2"},{"id":"R11","pred":"locatedIn","subj":"T50","obj":"T49"},{"id":"R13","pred":"hasAgent","subj":"T1","obj":"E1"},{"id":"R14","pred":"hasPatient","subj":"T6","obj":"E1"},{"id":"R15","pred":"hasPatient","subj":"T8","obj":"E2"},{"id":"R16","pred":"hasAgent","subj":"T17","obj":"E5"},{"id":"R17","pred":"hasPatient","subj":"T20","obj":"E5"},{"id":"R18","pred":"hasPatient","subj":"T25","obj":"E6"},{"id":"R19","pred":"hasPatient","subj":"T27","obj":"E6"},{"id":"R20","pred":"hasPatient","subj":"T28","obj":"E6"},{"id":"R21","pred":"hasPatient","subj":"T35","obj":"E8"},{"id":"R22","pred":"hasPatient","subj":"T42","obj":"E9"},{"id":"R23","pred":"hasAgent","subj":"E9","obj":"E10"},{"id":"R24","pred":"hasPatient","subj":"T46","obj":"E10"}],"text":"OBF-1, a novel B cell-specific coactivator that stimulates immunoglobulin promoter activity through association with octamer-binding proteins.\nRecent biochemical and genetic studies indicate that in addition to the octamer-binding proteins Oct-1 and Oct-2, other B cell components are required for lymphoid-restricted, octamer site-mediated immunoglobulin gene promoter activity. Using a genetic screen in yeast, we have isolated B cell-derived cDNAs encoding Oct-binding factor 1 (OBF-1), a novel protein that specifically associates with Oct-1 and Oct-2. Biochemical studies demonstrate that OBF-1 has no intrinsic DNA-binding activity and recognizes the POU domains of Oct-1 and Oct-2, but not those of Oct-4 and Oct-6. The OBF-1 mRNA is expressed in a highly cell-specific manner, being most abundant in B cells and essentially absent in most of the other cells or tissues tested. Furthermore, expression of OBF-1 in HeLa cells selectively stimulates the activity of a natural immunoglobulin promoter in an octamer site-dependent manner. Thus, OBF-1 has all the properties expected for a B cell-specific transcriptional coactivator protein."}
Anatomy-UBERON
{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":15,"end":21},"obj":"Body_part"},{"id":"T2","span":{"begin":263,"end":269},"obj":"Body_part"},{"id":"T3","span":{"begin":430,"end":436},"obj":"Body_part"},{"id":"T4","span":{"begin":1092,"end":1098},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL_0000236"},{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CL_0000236"},{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CL_0000236"},{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CL_0000236"}],"text":"OBF-1, a novel B cell-specific coactivator that stimulates immunoglobulin promoter activity through association with octamer-binding proteins.\nRecent biochemical and genetic studies indicate that in addition to the octamer-binding proteins Oct-1 and Oct-2, other B cell components are required for lymphoid-restricted, octamer site-mediated immunoglobulin gene promoter activity. Using a genetic screen in yeast, we have isolated B cell-derived cDNAs encoding Oct-binding factor 1 (OBF-1), a novel protein that specifically associates with Oct-1 and Oct-2. Biochemical studies demonstrate that OBF-1 has no intrinsic DNA-binding activity and recognizes the POU domains of Oct-1 and Oct-2, but not those of Oct-4 and Oct-6. The OBF-1 mRNA is expressed in a highly cell-specific manner, being most abundant in B cells and essentially absent in most of the other cells or tissues tested. Furthermore, expression of OBF-1 in HeLa cells selectively stimulates the activity of a natural immunoglobulin promoter in an octamer site-dependent manner. Thus, OBF-1 has all the properties expected for a B cell-specific transcriptional coactivator protein."}
CL-cell
{"project":"CL-cell","denotations":[{"id":"T1","span":{"begin":15,"end":21},"obj":"Cell"},{"id":"T2","span":{"begin":263,"end":269},"obj":"Cell"},{"id":"T3","span":{"begin":430,"end":436},"obj":"Cell"},{"id":"T4","span":{"begin":808,"end":815},"obj":"Cell"},{"id":"T5","span":{"begin":1090,"end":1098},"obj":"Cell"},{"id":"T6","span":{"begin":1092,"end":1098},"obj":"Cell"}],"attributes":[{"id":"A1","pred":"cl_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL:0000236"},{"id":"A2","pred":"cl_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CL:0000236"},{"id":"A3","pred":"cl_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CL:0000236"},{"id":"A4","pred":"cl_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CL:0000236"},{"id":"A5","pred":"cl_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CL:4023097"},{"id":"A6","pred":"cl_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/CL:0000236"}],"text":"OBF-1, a novel B cell-specific coactivator that stimulates immunoglobulin promoter activity through association with octamer-binding proteins.\nRecent biochemical and genetic studies indicate that in addition to the octamer-binding proteins Oct-1 and Oct-2, other B cell components are required for lymphoid-restricted, octamer site-mediated immunoglobulin gene promoter activity. Using a genetic screen in yeast, we have isolated B cell-derived cDNAs encoding Oct-binding factor 1 (OBF-1), a novel protein that specifically associates with Oct-1 and Oct-2. Biochemical studies demonstrate that OBF-1 has no intrinsic DNA-binding activity and recognizes the POU domains of Oct-1 and Oct-2, but not those of Oct-4 and Oct-6. The OBF-1 mRNA is expressed in a highly cell-specific manner, being most abundant in B cells and essentially absent in most of the other cells or tissues tested. Furthermore, expression of OBF-1 in HeLa cells selectively stimulates the activity of a natural immunoglobulin promoter in an octamer site-dependent manner. Thus, OBF-1 has all the properties expected for a B cell-specific transcriptional coactivator protein."}