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PubMed:7859290 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-5 protein denotes OBF-1
T2 9-42 protein denotes novel B cell-specific coactivator
T3 59-82 DNA denotes immunoglobulin promoter
T4 117-141 protein denotes octamer-binding proteins
T5 215-239 protein denotes octamer-binding proteins
T6 240-245 protein denotes Oct-1
T7 250-255 protein denotes Oct-2
T8 263-280 protein denotes B cell components
T9 341-369 DNA denotes immunoglobulin gene promoter
T10 430-450 DNA denotes B cell-derived cDNAs
T11 460-480 protein denotes Oct-binding factor 1
T12 482-487 protein denotes OBF-1
T13 540-545 protein denotes Oct-1
T14 550-555 protein denotes Oct-2
T15 594-599 protein denotes OBF-1
T16 657-668 protein denotes POU domains
T17 672-677 protein denotes Oct-1
T18 682-687 protein denotes Oct-2
T19 706-711 protein denotes Oct-4
T20 716-721 protein denotes Oct-6
T21 727-737 RNA denotes OBF-1 mRNA
T22 808-815 cell_type denotes B cells
T23 912-917 protein denotes OBF-1
T24 921-931 cell_line denotes HeLa cells
T25 981-1004 DNA denotes immunoglobulin promoter
T26 1011-1023 DNA denotes octamer site
T27 1048-1053 protein denotes OBF-1
T28 1092-1143 protein denotes B cell-specific transcriptional coactivator protein

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-142 Sentence denotes OBF-1, a novel B cell-specific coactivator that stimulates immunoglobulin promoter activity through association with octamer-binding proteins.
S2 143-379 Sentence denotes Recent biochemical and genetic studies indicate that in addition to the octamer-binding proteins Oct-1 and Oct-2, other B cell components are required for lymphoid-restricted, octamer site-mediated immunoglobulin gene promoter activity.
S3 380-556 Sentence denotes Using a genetic screen in yeast, we have isolated B cell-derived cDNAs encoding Oct-binding factor 1 (OBF-1), a novel protein that specifically associates with Oct-1 and Oct-2.
S4 557-722 Sentence denotes Biochemical studies demonstrate that OBF-1 has no intrinsic DNA-binding activity and recognizes the POU domains of Oct-1 and Oct-2, but not those of Oct-4 and Oct-6.
S5 723-884 Sentence denotes The OBF-1 mRNA is expressed in a highly cell-specific manner, being most abundant in B cells and essentially absent in most of the other cells or tissues tested.
S6 885-1041 Sentence denotes Furthermore, expression of OBF-1 in HeLa cells selectively stimulates the activity of a natural immunoglobulin promoter in an octamer site-dependent manner.
S7 1042-1144 Sentence denotes Thus, OBF-1 has all the properties expected for a B cell-specific transcriptional coactivator protein.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-5 NP denotes OBF-1
C3 7-42 NP denotes a novel B cell-specific coactivator
C4 43-47 NP denotes that
C2 7-141 NP denotes a novel B cell-specific coactivator that stimulates immunoglobulin promoter activity through association with octamer-binding proteins
C5 211-255 NP denotes the octamer-binding proteins Oct-1 and Oct-2
C6 460-488 NP denotes Oct-binding factor 1 (OBF-1)
C8 490-505 NP denotes a novel protein
C9 506-510 NP denotes that
C10 540-555 NP denotes Oct-1 and Oct-2
C7 490-555 NP denotes a novel protein that specifically associates with Oct-1 and Oct-2
C11 594-599 NP denotes OBF-1
C12 653-668 NP denotes the POU domains
C13 672-687 NP denotes Oct-1 and Oct-2
C14 697-702 NP denotes those
C15 912-917 NP denotes OBF-1
C16 1048-1053 NP denotes OBF-1
C17 1090-1143 NP denotes a B cell-specific transcriptional coactivator protein
R1 C4 C3 coref-relat that,a novel B cell-specific coactivator
R2 C2 C1 coref-appos a novel B cell-specific coactivator that stimulates immunoglobulin promoter activity through association with octamer-binding proteins,OBF-1
R3 C9 C8 coref-relat that,a novel protein
R4 C10 C5 coref-ident Oct-1 and Oct-2,the octamer-binding proteins Oct-1 and Oct-2
R5 C7 C6 coref-appos a novel protein that specifically associates with Oct-1 and Oct-2,Oct-binding factor 1 (OBF-1)
R6 C11 C6 coref-ident OBF-1,Oct-binding factor 1 (OBF-1)
R7 C13 C10 coref-ident Oct-1 and Oct-2,Oct-1 and Oct-2
R8 C14 C12 coref-pron those,the POU domains
R9 C15 C11 coref-ident OBF-1,OBF-1
R10 C16 C15 coref-ident OBF-1,OBF-1
R11 C17 C3 coref-ident a B cell-specific transcriptional coactivator protein,a novel B cell-specific coactivator

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-5 protein_molecule denotes OBF-1
T2 9-42 protein_family_or_group denotes novel B cell-specific coactivator
T3 59-82 DNA_domain_or_region denotes immunoglobulin promoter
T4 117-141 protein_family_or_group denotes octamer-binding proteins
T5 215-239 protein_family_or_group denotes octamer-binding proteins
T6 240-245 protein_molecule denotes Oct-1
T7 250-255 protein_molecule denotes Oct-2
T8 263-280 protein_family_or_group denotes B cell components
T9 298-340 other_name denotes lymphoid-restricted, octamer site-mediated
T10 341-369 DNA_domain_or_region denotes immunoglobulin gene promoter
T11 430-450 DNA_family_or_group denotes B cell-derived cDNAs
T12 460-480 protein_molecule denotes Oct-binding factor 1
T13 482-487 protein_molecule denotes OBF-1
T14 540-545 protein_molecule denotes Oct-1
T15 550-555 protein_molecule denotes Oct-2
T16 594-599 protein_molecule denotes OBF-1
T17 657-668 protein_domain_or_region denotes POU domains
T18 672-677 protein_molecule denotes Oct-1
T19 682-687 protein_molecule denotes Oct-2
T20 706-711 protein_molecule denotes Oct-4
T21 716-721 protein_molecule denotes Oct-6
T22 727-732 protein_molecule denotes OBF-1
T23 808-815 cell_type denotes B cells
T24 912-917 protein_molecule denotes OBF-1
T25 921-931 cell_line denotes HeLa cells
T26 981-1004 DNA_domain_or_region denotes immunoglobulin promoter
T27 1011-1023 DNA_domain_or_region denotes octamer site
T28 1048-1053 protein_molecule denotes OBF-1
T29 1092-1143 protein_family_or_group denotes B cell-specific transcriptional coactivator protein

bionlp-st-gro-2013-training

Id Subject Object Predicate Lexical cue
T1 0-5 Protein denotes OBF-1
T2 15-21 Cell denotes B cell
T3 31-42 TranscriptionCoactivator denotes coactivator
T5 59-73 Gene denotes immunoglobulin
T6 74-82 Promoter denotes promoter
T14 240-245 Protein denotes Oct-1
T15 250-255 Protein denotes Oct-2
T16 263-269 Cell denotes B cell
T17 319-331 DNARegion denotes octamer site
T19 341-360 Gene denotes immunoglobulin gene
T20 361-369 Promoter denotes promoter
T21 430-436 Cell denotes B cell
T22 445-450 DNA denotes cDNAs
T23 460-480 Protein denotes Oct-binding factor 1
T24 482-487 Protein denotes OBF-1
T25 498-505 Protein denotes protein
T27 540-545 Protein denotes Oct-1
T28 550-555 Protein denotes Oct-2
T29 594-599 Protein denotes OBF-1
T31 657-668 ProteinDomain denotes POU domains
T32 672-677 Protein denotes Oct-1
T33 682-687 Protein denotes Oct-2
T34 727-732 Protein denotes OBF-1
T35 733-737 MessengerRNA denotes mRNA
T37 763-767 Cell denotes cell
T38 808-815 Cell denotes B cells
T39 860-865 Cell denotes cells
T40 869-876 Tissue denotes tissues
T42 912-917 Protein denotes OBF-1
T43 921-931 Cell denotes HeLa cells
T45 981-995 Gene denotes immunoglobulin
T46 996-1004 Promoter denotes promoter
T47 1011-1023 DNARegion denotes octamer site
T48 1048-1053 Protein denotes OBF-1
T49 1092-1098 Cell denotes B cell
T50 1108-1143 TranscriptionCoactivator denotes transcriptional coactivator protein
T8 117-141 Protein denotes octamer-binding proteins
T9 215-239 Protein denotes octamer-binding proteins
E1 48-58 Increase denotes stimulates
E2 100-111 BindingToProtein denotes association
E5 332-340 RegulatoryProcess denotes mediated
E6 524-534 BindingToProtein denotes associates
E8 741-750 TranscriptionOfGene denotes expressed
E9 898-908 GeneExpression denotes expression
E10 944-954 Increase denotes stimulates
R1 T5 T6 hasPart immunoglobulin,promoter
R2 T22 T23 encodes cDNAs,Oct-binding factor 1
R3 T32 T31 hasPart Oct-1,POU domains
R4 T33 T31 hasPart Oct-2,POU domains
R5 T35 T34 encodes mRNA,OBF-1
R6 E8 T37 locatedIn expressed,cell
R7 E8 T38 locatedIn expressed,B cells
R8 E9 T43 locatedIn expression,HeLa cells
R9 T45 T46 hasPart immunoglobulin,promoter
R10 T3 T2 locatedIn coactivator,B cell
R11 T50 T49 locatedIn transcriptional coactivator protein,B cell
R13 T1 E1 hasAgent OBF-1,stimulates
R14 T6 E1 hasPatient promoter,stimulates
R15 T8 E2 hasPatient octamer-binding proteins,association
R16 T17 E5 hasAgent octamer site,mediated
R17 T20 E5 hasPatient promoter,mediated
R18 T25 E6 hasPatient protein,associates
R19 T27 E6 hasPatient Oct-1,associates
R20 T28 E6 hasPatient Oct-2,associates
R21 T35 E8 hasPatient mRNA,expressed
R22 T42 E9 hasPatient OBF-1,expression
R23 E9 E10 hasAgent expression,stimulates
R24 T46 E10 hasPatient promoter,stimulates

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 15-21 Body_part denotes B cell http://purl.obolibrary.org/obo/CL_0000236
T2 263-269 Body_part denotes B cell http://purl.obolibrary.org/obo/CL_0000236
T3 430-436 Body_part denotes B cell http://purl.obolibrary.org/obo/CL_0000236
T4 1092-1098 Body_part denotes B cell http://purl.obolibrary.org/obo/CL_0000236

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 15-21 Cell denotes B cell http://purl.obolibrary.org/obo/CL:0000236
T2 263-269 Cell denotes B cell http://purl.obolibrary.org/obo/CL:0000236
T3 430-436 Cell denotes B cell http://purl.obolibrary.org/obo/CL:0000236
T4 808-815 Cell denotes B cells http://purl.obolibrary.org/obo/CL:0000236
T5 1090-1098 Cell denotes a B cell http://purl.obolibrary.org/obo/CL:4023097
T6 1092-1098 Cell denotes B cell http://purl.obolibrary.org/obo/CL:0000236