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PubMed:7826623 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-25 DNA denotes T-cell functional regions
T2 33-61 DNA denotes human IL-3 proximal promoter
T3 67-98 DNA denotes human interleukin-3 (IL-3) gene
T4 144-151 cell_type denotes T cells
T5 284-298 cell_line denotes Jurkat T cells
T6 304-321 protein denotes phytohemaglutinin
T7 323-326 protein denotes PHA
T8 400-409 DNA denotes IL-3 gene
T9 565-603 DNA denotes IL-3 gene 5' and 3' flanking sequences
T10 610-651 DNA denotes positive and negative regulatory elements
T11 675-702 DNA denotes proximal 5' flanking region
T12 710-719 DNA denotes IL-3 gene
T13 725-740 DNA denotes promoter region
T14 749-761 DNA denotes -173 and -60
T15 786-805 DNA denotes activating elements
T16 811-831 protein denotes transcription factor
T17 832-836 protein denotes AP-1
T18 936-959 DNA denotes IL-3 CK-1/CK-2 elements
T19 985-999 DNA denotes cytokine genes
T20 1093-1114 DNA denotes heterologous promoter
T21 1145-1149 protein denotes /PHA

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-62 Sentence denotes T-cell functional regions of the human IL-3 proximal promoter.
S2 63-152 Sentence denotes The human interleukin-3 (IL-3) gene is expressed almost exclusively in activated T cells.
S3 153-240 Sentence denotes Its expression is regulated at both the transcriptional and post-transcriptional level.
S4 241-410 Sentence denotes We have previously shown that treatment of Jurkat T cells with phytohemaglutinin (PHA) and the phorbol ester, PMA, activated transcription initiation from the IL-3 gene.
S5 411-604 Sentence denotes To define the regions of the gene required for transcription activation, we generated a series of reporter constructs containing different regions of the IL-3 gene 5' and 3' flanking sequences.
S6 605-720 Sentence denotes Both positive and negative regulatory elements were identified in the proximal 5' flanking region of the IL-3 gene.
S7 721-806 Sentence denotes The promoter region between -173 and -60 contained the strongest activating elements.
S8 807-898 Sentence denotes The transcription factor AP-1 could bind to this positive activator region of the promoter.
S9 899-1150 Sentence denotes We also examined the function of the IL-3 CK-1/CK-2 elements that are present in many cytokine genes and found that they acted as a repressor of basal level expression when cloned upstream of a heterologous promoter but were also inducible by PMA/PHA.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 63-98 NP denotes The human interleukin-3 (IL-3) gene
C2 153-156 NP denotes Its
C4 332-349 NP denotes the phorbol ester
C5 351-354 NP denotes PMA
C3 304-354 NP denotes phytohemaglutinin (PHA) and the phorbol ester, PMA
C6 396-409 NP denotes the IL-3 gene
C7 436-444 NP denotes the gene
C8 706-719 NP denotes the IL-3 gene
C9 721-761 NP denotes The promoter region between -173 and -60
C10 851-897 NP denotes this positive activator region of the promoter
C11 932-959 NP denotes the IL-3 CK-1/CK-2 elements
C12 960-964 NP denotes that
C13 1015-1019 NP denotes they
C14 1142-1149 NP denotes PMA/PHA
R1 C2 C1 coref-pron Its,The human interleukin-3 (IL-3) gene
R2 C5 C4 coref-appos PMA,the phorbol ester
R3 C6 C1 coref-ident the IL-3 gene,The human interleukin-3 (IL-3) gene
R4 C7 C6 coref-ident the gene,the IL-3 gene
R5 C8 C6 coref-ident the IL-3 gene,the IL-3 gene
R6 C10 C9 coref-ident this positive activator region of the promoter,The promoter region between -173 and -60
R7 C12 C11 coref-relat that,the IL-3 CK-1/CK-2 elements
R8 C13 C11 coref-pron they,the IL-3 CK-1/CK-2 elements
R9 C14 C3 coref-ident PMA/PHA,"phytohemaglutinin (PHA) and the phorbol ester, PMA"

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-25 DNA_domain_or_region denotes T-cell functional regions
T2 33-61 DNA_domain_or_region denotes human IL-3 proximal promoter
T3 67-88 DNA_domain_or_region denotes human interleukin-3 (
T4 88-92 protein_molecule denotes IL-3
T5 144-151 cell_type denotes T cells
T6 284-290 cell_line denotes Jurkat
T7 291-298 cell_type denotes T cells
T8 304-321 protein_molecule denotes phytohemaglutinin
T9 323-326 protein_molecule denotes PHA
T10 336-349 other_organic_compound denotes phorbol ester
T11 351-354 other_organic_compound denotes PMA
T12 400-409 DNA_domain_or_region denotes IL-3 gene
T13 565-574 DNA_domain_or_region denotes IL-3 gene
T14 675-702 DNA_domain_or_region denotes proximal 5' flanking region
T15 710-719 DNA_domain_or_region denotes IL-3 gene
T16 725-740 DNA_domain_or_region denotes promoter region
T17 749-761 DNA_domain_or_region denotes -173 and -60
T18 786-805 DNA_domain_or_region denotes activating elements
T19 811-831 protein_family_or_group denotes transcription factor
T20 832-836 protein_molecule denotes AP-1
T21 936-959 DNA_domain_or_region denotes IL-3 CK-1/CK-2 elements
T22 985-999 DNA_family_or_group denotes cytokine genes
T23 1044-1066 other_name denotes basal level expression
T24 1093-1114 DNA_domain_or_region denotes heterologous promoter
T25 1142-1145 other_organic_compound denotes PMA
T26 1145-1149 protein_molecule denotes /PHA