
PubMed:7826623
Annnotations
jnlpba-st-training
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-25 | DNA | denotes | T-cell functional regions |
T2 | 33-61 | DNA | denotes | human IL-3 proximal promoter |
T3 | 67-98 | DNA | denotes | human interleukin-3 (IL-3) gene |
T4 | 144-151 | cell_type | denotes | T cells |
T5 | 284-298 | cell_line | denotes | Jurkat T cells |
T6 | 304-321 | protein | denotes | phytohemaglutinin |
T7 | 323-326 | protein | denotes | PHA |
T8 | 400-409 | DNA | denotes | IL-3 gene |
T9 | 565-603 | DNA | denotes | IL-3 gene 5' and 3' flanking sequences |
T10 | 610-651 | DNA | denotes | positive and negative regulatory elements |
T11 | 675-702 | DNA | denotes | proximal 5' flanking region |
T12 | 710-719 | DNA | denotes | IL-3 gene |
T13 | 725-740 | DNA | denotes | promoter region |
T14 | 749-761 | DNA | denotes | -173 and -60 |
T15 | 786-805 | DNA | denotes | activating elements |
T16 | 811-831 | protein | denotes | transcription factor |
T17 | 832-836 | protein | denotes | AP-1 |
T18 | 936-959 | DNA | denotes | IL-3 CK-1/CK-2 elements |
T19 | 985-999 | DNA | denotes | cytokine genes |
T20 | 1093-1114 | DNA | denotes | heterologous promoter |
T21 | 1145-1149 | protein | denotes | /PHA |
pubmed-sentences-benchmark
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
S1 | 0-62 | Sentence | denotes | T-cell functional regions of the human IL-3 proximal promoter. |
S2 | 63-152 | Sentence | denotes | The human interleukin-3 (IL-3) gene is expressed almost exclusively in activated T cells. |
S3 | 153-240 | Sentence | denotes | Its expression is regulated at both the transcriptional and post-transcriptional level. |
S4 | 241-410 | Sentence | denotes | We have previously shown that treatment of Jurkat T cells with phytohemaglutinin (PHA) and the phorbol ester, PMA, activated transcription initiation from the IL-3 gene. |
S5 | 411-604 | Sentence | denotes | To define the regions of the gene required for transcription activation, we generated a series of reporter constructs containing different regions of the IL-3 gene 5' and 3' flanking sequences. |
S6 | 605-720 | Sentence | denotes | Both positive and negative regulatory elements were identified in the proximal 5' flanking region of the IL-3 gene. |
S7 | 721-806 | Sentence | denotes | The promoter region between -173 and -60 contained the strongest activating elements. |
S8 | 807-898 | Sentence | denotes | The transcription factor AP-1 could bind to this positive activator region of the promoter. |
S9 | 899-1150 | Sentence | denotes | We also examined the function of the IL-3 CK-1/CK-2 elements that are present in many cytokine genes and found that they acted as a repressor of basal level expression when cloned upstream of a heterologous promoter but were also inducible by PMA/PHA. |
genia-medco-coref
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
C1 | 63-98 | NP | denotes | The human interleukin-3 (IL-3) gene |
C2 | 153-156 | NP | denotes | Its |
C4 | 332-349 | NP | denotes | the phorbol ester |
C5 | 351-354 | NP | denotes | PMA |
C3 | 304-354 | NP | denotes | phytohemaglutinin (PHA) and the phorbol ester, PMA |
C6 | 396-409 | NP | denotes | the IL-3 gene |
C7 | 436-444 | NP | denotes | the gene |
C8 | 706-719 | NP | denotes | the IL-3 gene |
C9 | 721-761 | NP | denotes | The promoter region between -173 and -60 |
C10 | 851-897 | NP | denotes | this positive activator region of the promoter |
C11 | 932-959 | NP | denotes | the IL-3 CK-1/CK-2 elements |
C12 | 960-964 | NP | denotes | that |
C13 | 1015-1019 | NP | denotes | they |
C14 | 1142-1149 | NP | denotes | PMA/PHA |
R1 | C2 | C1 | coref-pron | Its,The human interleukin-3 (IL-3) gene |
R2 | C5 | C4 | coref-appos | PMA,the phorbol ester |
R3 | C6 | C1 | coref-ident | the IL-3 gene,The human interleukin-3 (IL-3) gene |
R4 | C7 | C6 | coref-ident | the gene,the IL-3 gene |
R5 | C8 | C6 | coref-ident | the IL-3 gene,the IL-3 gene |
R6 | C10 | C9 | coref-ident | this positive activator region of the promoter,The promoter region between -173 and -60 |
R7 | C12 | C11 | coref-relat | that,the IL-3 CK-1/CK-2 elements |
R8 | C13 | C11 | coref-pron | they,the IL-3 CK-1/CK-2 elements |
R9 | C14 | C3 | coref-ident | PMA/PHA,"phytohemaglutinin (PHA) and the phorbol ester, PMA" |
GENIAcorpus
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-25 | DNA_domain_or_region | denotes | T-cell functional regions |
T2 | 33-61 | DNA_domain_or_region | denotes | human IL-3 proximal promoter |
T3 | 67-88 | DNA_domain_or_region | denotes | human interleukin-3 ( |
T4 | 88-92 | protein_molecule | denotes | IL-3 |
T5 | 144-151 | cell_type | denotes | T cells |
T6 | 284-290 | cell_line | denotes | Jurkat |
T7 | 291-298 | cell_type | denotes | T cells |
T8 | 304-321 | protein_molecule | denotes | phytohemaglutinin |
T9 | 323-326 | protein_molecule | denotes | PHA |
T10 | 336-349 | other_organic_compound | denotes | phorbol ester |
T11 | 351-354 | other_organic_compound | denotes | PMA |
T12 | 400-409 | DNA_domain_or_region | denotes | IL-3 gene |
T13 | 565-574 | DNA_domain_or_region | denotes | IL-3 gene |
T14 | 675-702 | DNA_domain_or_region | denotes | proximal 5' flanking region |
T15 | 710-719 | DNA_domain_or_region | denotes | IL-3 gene |
T16 | 725-740 | DNA_domain_or_region | denotes | promoter region |
T17 | 749-761 | DNA_domain_or_region | denotes | -173 and -60 |
T18 | 786-805 | DNA_domain_or_region | denotes | activating elements |
T19 | 811-831 | protein_family_or_group | denotes | transcription factor |
T20 | 832-836 | protein_molecule | denotes | AP-1 |
T21 | 936-959 | DNA_domain_or_region | denotes | IL-3 CK-1/CK-2 elements |
T22 | 985-999 | DNA_family_or_group | denotes | cytokine genes |
T23 | 1044-1066 | other_name | denotes | basal level expression |
T24 | 1093-1114 | DNA_domain_or_region | denotes | heterologous promoter |
T25 | 1142-1145 | other_organic_compound | denotes | PMA |
T26 | 1145-1149 | protein_molecule | denotes | /PHA |