PubMed:7706273
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/7706273","sourcedb":"PubMed","sourceid":"7706273","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/7706273","text":"Transcriptional regulation of the vacuolar H(+)-ATPase B2 subunit gene in differentiating THP-1 cells.\nMonocyte-macrophage differentiation was used as a model system for studying gene regulation of the human vacuolar H(+)-ATPase (V-ATPase). We examined mRNA levels of various V-ATPase subunits during differentiation of both native monocytes and the cell line THP-1, and found that transcriptional and post-transcriptional mechanisms could account for increases in cell V-ATPase content. From nuclear runoff experiments, we found that one subunit in particular, the B2 isoform (Mr = 56,000), was amplified primarily by transcriptional means. We have begun to examine the structure of the B2 subunit promoter region. Isolation and sequencing of the first exon and 5'-flanking region of this gene reveal a TATA-less promoter with a high G + C content. Primer extension and ribonuclease protection analyses indicate a single major transcriptional start site. We transfected promoter-luciferase reporter plasmids into THP-1 cells to define sequences that mediate transcriptional control during monocyte differentiation. We found that sequences downstream from the transcriptional start site were sufficient to confer increased expression during THP-1 differentiation. DNase I footprinting and sequence analysis revealed the existence of multiple AP2 and Sp1 binding sites in the 5'-untranslated and proximal coding regions.","tracks":[{"project":"genia-medco-coref","denotations":[{"id":"C1","span":{"begin":90,"end":101},"obj":"NP"},{"id":"C2","span":{"begin":103,"end":138},"obj":"NP"},{"id":"C3","span":{"begin":535,"end":546},"obj":"NP"},{"id":"C4","span":{"begin":562,"end":590},"obj":"NP"},{"id":"C5","span":{"begin":785,"end":794},"obj":"NP"},{"id":"C6","span":{"begin":1014,"end":1025},"obj":"NP"},{"id":"C7","span":{"begin":1036,"end":1045},"obj":"NP"},{"id":"C8","span":{"begin":1046,"end":1050},"obj":"NP"},{"id":"C9","span":{"begin":1090,"end":1114},"obj":"NP"}],"relations":[{"id":"R1","pred":"coref-ident","subj":"C4","obj":"C3"},{"id":"R2","pred":"coref-ident","subj":"C5","obj":"C4"},{"id":"R3","pred":"coref-ident","subj":"C6","obj":"C1"},{"id":"R4","pred":"coref-relat","subj":"C8","obj":"C7"},{"id":"R5","pred":"coref-ident","subj":"C9","obj":"C2"}],"attributes":[{"subj":"C1","pred":"source","obj":"genia-medco-coref"},{"subj":"C2","pred":"source","obj":"genia-medco-coref"},{"subj":"C3","pred":"source","obj":"genia-medco-coref"},{"subj":"C4","pred":"source","obj":"genia-medco-coref"},{"subj":"C5","pred":"source","obj":"genia-medco-coref"},{"subj":"C6","pred":"source","obj":"genia-medco-coref"},{"subj":"C7","pred":"source","obj":"genia-medco-coref"},{"subj":"C8","pred":"source","obj":"genia-medco-coref"},{"subj":"C9","pred":"source","obj":"genia-medco-coref"}]},{"project":"jnlpba-st-training","denotations":[{"id":"T1","span":{"begin":34,"end":70},"obj":"DNA"},{"id":"T2","span":{"begin":74,"end":101},"obj":"cell_line"},{"id":"T3","span":{"begin":202,"end":228},"obj":"protein"},{"id":"T4","span":{"begin":230,"end":238},"obj":"protein"},{"id":"T5","span":{"begin":253,"end":257},"obj":"RNA"},{"id":"T6","span":{"begin":276,"end":284},"obj":"protein"},{"id":"T7","span":{"begin":325,"end":341},"obj":"cell_type"},{"id":"T8","span":{"begin":350,"end":359},"obj":"cell_line"},{"id":"T9","span":{"begin":360,"end":365},"obj":"cell_line"},{"id":"T10","span":{"begin":470,"end":478},"obj":"protein"},{"id":"T11","span":{"begin":566,"end":576},"obj":"protein"},{"id":"T12","span":{"begin":688,"end":714},"obj":"DNA"},{"id":"T13","span":{"begin":748,"end":758},"obj":"DNA"},{"id":"T14","span":{"begin":763,"end":781},"obj":"DNA"},{"id":"T15","span":{"begin":804,"end":822},"obj":"DNA"},{"id":"T16","span":{"begin":871,"end":883},"obj":"protein"},{"id":"T17","span":{"begin":922,"end":954},"obj":"DNA"},{"id":"T18","span":{"begin":971,"end":1008},"obj":"DNA"},{"id":"T19","span":{"begin":1014,"end":1025},"obj":"cell_line"},{"id":"T20","span":{"begin":1241,"end":1246},"obj":"cell_line"},{"id":"T21","span":{"begin":1264,"end":1271},"obj":"protein"},{"id":"T22","span":{"begin":1342,"end":1367},"obj":"DNA"},{"id":"T23","span":{"begin":1375,"end":1418},"obj":"DNA"}],"attributes":[{"subj":"T1","pred":"source","obj":"jnlpba-st-training"},{"subj":"T2","pred":"source","obj":"jnlpba-st-training"},{"subj":"T3","pred":"source","obj":"jnlpba-st-training"},{"subj":"T4","pred":"source","obj":"jnlpba-st-training"},{"subj":"T5","pred":"source","obj":"jnlpba-st-training"},{"subj":"T6","pred":"source","obj":"jnlpba-st-training"},{"subj":"T7","pred":"source","obj":"jnlpba-st-training"},{"subj":"T8","pred":"source","obj":"jnlpba-st-training"},{"subj":"T9","pred":"source","obj":"jnlpba-st-training"},{"subj":"T10","pred":"source","obj":"jnlpba-st-training"},{"subj":"T11","pred":"source","obj":"jnlpba-st-training"},{"subj":"T12","pred":"source","obj":"jnlpba-st-training"},{"subj":"T13","pred":"source","obj":"jnlpba-st-training"},{"subj":"T14","pred":"source","obj":"jnlpba-st-training"},{"subj":"T15","pred":"source","obj":"jnlpba-st-training"},{"subj":"T16","pred":"source","obj":"jnlpba-st-training"},{"subj":"T17","pred":"source","obj":"jnlpba-st-training"},{"subj":"T18","pred":"source","obj":"jnlpba-st-training"},{"subj":"T19","pred":"source","obj":"jnlpba-st-training"},{"subj":"T20","pred":"source","obj":"jnlpba-st-training"},{"subj":"T21","pred":"source","obj":"jnlpba-st-training"},{"subj":"T22","pred":"source","obj":"jnlpba-st-training"},{"subj":"T23","pred":"source","obj":"jnlpba-st-training"}]},{"project":"sentences","denotations":[{"id":"T1","span":{"begin":0,"end":102},"obj":"Sentence"},{"id":"T2","span":{"begin":103,"end":240},"obj":"Sentence"},{"id":"T3","span":{"begin":241,"end":487},"obj":"Sentence"},{"id":"T4","span":{"begin":488,"end":641},"obj":"Sentence"},{"id":"T5","span":{"begin":642,"end":715},"obj":"Sentence"},{"id":"T6","span":{"begin":716,"end":849},"obj":"Sentence"},{"id":"T7","span":{"begin":850,"end":955},"obj":"Sentence"},{"id":"T8","span":{"begin":956,"end":1115},"obj":"Sentence"},{"id":"T9","span":{"begin":1116,"end":1263},"obj":"Sentence"},{"id":"T10","span":{"begin":1264,"end":1419},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":102},"obj":"Sentence"},{"id":"T2","span":{"begin":103,"end":240},"obj":"Sentence"},{"id":"T3","span":{"begin":241,"end":487},"obj":"Sentence"},{"id":"T4","span":{"begin":488,"end":641},"obj":"Sentence"},{"id":"T5","span":{"begin":642,"end":715},"obj":"Sentence"},{"id":"T6","span":{"begin":716,"end":849},"obj":"Sentence"},{"id":"T7","span":{"begin":850,"end":955},"obj":"Sentence"},{"id":"T8","span":{"begin":956,"end":1115},"obj":"Sentence"},{"id":"T9","span":{"begin":1116,"end":1263},"obj":"Sentence"},{"id":"T10","span":{"begin":1264,"end":1419},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"},{"subj":"T10","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"},{"subj":"T10","pred":"source","obj":"sentences"}]},{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":202,"end":207},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"9606"},{"subj":"T1","pred":"source","obj":"NCBITAXON"}]},{"project":"pubmed-sentences-benchmark","denotations":[{"id":"S1","span":{"begin":0,"end":102},"obj":"Sentence"},{"id":"S2","span":{"begin":103,"end":240},"obj":"Sentence"},{"id":"S3","span":{"begin":241,"end":487},"obj":"Sentence"},{"id":"S4","span":{"begin":488,"end":641},"obj":"Sentence"},{"id":"S5","span":{"begin":642,"end":715},"obj":"Sentence"},{"id":"S6","span":{"begin":716,"end":849},"obj":"Sentence"},{"id":"S7","span":{"begin":850,"end":955},"obj":"Sentence"},{"id":"S8","span":{"begin":956,"end":1115},"obj":"Sentence"},{"id":"S9","span":{"begin":1116,"end":1263},"obj":"Sentence"},{"id":"S10","span":{"begin":1264,"end":1419},"obj":"Sentence"}],"attributes":[{"subj":"S1","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S2","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S3","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S4","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S5","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S6","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S7","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S8","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S9","pred":"source","obj":"pubmed-sentences-benchmark"},{"subj":"S10","pred":"source","obj":"pubmed-sentences-benchmark"}]},{"project":"GENIAcorpus","denotations":[{"id":"T1","span":{"begin":0,"end":26},"obj":"other_name"},{"id":"T2","span":{"begin":34,"end":65},"obj":"protein_subunit"},{"id":"T3","span":{"begin":74,"end":101},"obj":"cell_line"},{"id":"T4","span":{"begin":103,"end":138},"obj":"other_name"},{"id":"T5","span":{"begin":179,"end":194},"obj":"other_name"},{"id":"T6","span":{"begin":202,"end":228},"obj":"protein_molecule"},{"id":"T7","span":{"begin":230,"end":238},"obj":"protein_molecule"},{"id":"T8","span":{"begin":253,"end":257},"obj":"RNA_family_or_group"},{"id":"T9","span":{"begin":276,"end":284},"obj":"protein_molecule"},{"id":"T10","span":{"begin":325,"end":341},"obj":"cell_type"},{"id":"T11","span":{"begin":350,"end":359},"obj":"cell_line"},{"id":"T12","span":{"begin":360,"end":365},"obj":"cell_line"},{"id":"T13","span":{"begin":465,"end":469},"obj":"other_name"},{"id":"T14","span":{"begin":470,"end":478},"obj":"protein_molecule"},{"id":"T15","span":{"begin":566,"end":576},"obj":"protein_subunit"},{"id":"T16","span":{"begin":619,"end":640},"obj":"other_name"},{"id":"T17","span":{"begin":688,"end":698},"obj":"protein_subunit"},{"id":"T18","span":{"begin":699,"end":714},"obj":"DNA_domain_or_region"},{"id":"T19","span":{"begin":748,"end":758},"obj":"DNA_domain_or_region"},{"id":"T20","span":{"begin":763,"end":781},"obj":"DNA_domain_or_region"},{"id":"T21","span":{"begin":804,"end":822},"obj":"DNA_domain_or_region"},{"id":"T22","span":{"begin":835,"end":836},"obj":"nucleotide"},{"id":"T23","span":{"begin":839,"end":840},"obj":"nucleotide"},{"id":"T24","span":{"begin":850,"end":866},"obj":"other_name"},{"id":"T25","span":{"begin":871,"end":883},"obj":"protein_molecule"},{"id":"T26","span":{"begin":922,"end":954},"obj":"DNA_domain_or_region"},{"id":"T27","span":{"begin":971,"end":1008},"obj":"DNA_molecule"},{"id":"T28","span":{"begin":1014,"end":1025},"obj":"cell_line"},{"id":"T29","span":{"begin":1059,"end":1082},"obj":"other_name"},{"id":"T30","span":{"begin":1090,"end":1114},"obj":"other_name"},{"id":"T31","span":{"begin":1241,"end":1246},"obj":"cell_line"},{"id":"T32","span":{"begin":1264,"end":1271},"obj":"protein_molecule"},{"id":"T33","span":{"begin":1289,"end":1306},"obj":"other_name"}],"attributes":[{"subj":"T1","pred":"source","obj":"GENIAcorpus"},{"subj":"T2","pred":"source","obj":"GENIAcorpus"},{"subj":"T3","pred":"source","obj":"GENIAcorpus"},{"subj":"T4","pred":"source","obj":"GENIAcorpus"},{"subj":"T5","pred":"source","obj":"GENIAcorpus"},{"subj":"T6","pred":"source","obj":"GENIAcorpus"},{"subj":"T7","pred":"source","obj":"GENIAcorpus"},{"subj":"T8","pred":"source","obj":"GENIAcorpus"},{"subj":"T9","pred":"source","obj":"GENIAcorpus"},{"subj":"T10","pred":"source","obj":"GENIAcorpus"},{"subj":"T11","pred":"source","obj":"GENIAcorpus"},{"subj":"T12","pred":"source","obj":"GENIAcorpus"},{"subj":"T13","pred":"source","obj":"GENIAcorpus"},{"subj":"T14","pred":"source","obj":"GENIAcorpus"},{"subj":"T15","pred":"source","obj":"GENIAcorpus"},{"subj":"T16","pred":"source","obj":"GENIAcorpus"},{"subj":"T17","pred":"source","obj":"GENIAcorpus"},{"subj":"T18","pred":"source","obj":"GENIAcorpus"},{"subj":"T19","pred":"source","obj":"GENIAcorpus"},{"subj":"T20","pred":"source","obj":"GENIAcorpus"},{"subj":"T21","pred":"source","obj":"GENIAcorpus"},{"subj":"T22","pred":"source","obj":"GENIAcorpus"},{"subj":"T23","pred":"source","obj":"GENIAcorpus"},{"subj":"T24","pred":"source","obj":"GENIAcorpus"},{"subj":"T25","pred":"source","obj":"GENIAcorpus"},{"subj":"T26","pred":"source","obj":"GENIAcorpus"},{"subj":"T27","pred":"source","obj":"GENIAcorpus"},{"subj":"T28","pred":"source","obj":"GENIAcorpus"},{"subj":"T29","pred":"source","obj":"GENIAcorpus"},{"subj":"T30","pred":"source","obj":"GENIAcorpus"},{"subj":"T31","pred":"source","obj":"GENIAcorpus"},{"subj":"T32","pred":"source","obj":"GENIAcorpus"},{"subj":"T33","pred":"source","obj":"GENIAcorpus"}]},{"project":"Glycosmos6-MAT","denotations":[{"id":"T1","span":{"begin":1395,"end":1403},"obj":"http://purl.obolibrary.org/obo/MAT_0000491"}],"attributes":[{"subj":"T1","pred":"source","obj":"Glycosmos6-MAT"}]},{"project":"Anatomy-MAT","denotations":[{"id":"T1","span":{"begin":1395,"end":1403},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"mat_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MAT_0000491"},{"subj":"T1","pred":"source","obj":"Anatomy-MAT"}]},{"project":"Anatomy-UBERON","denotations":[{"id":"T1","span":{"begin":103,"end":111},"obj":"Body_part"},{"id":"T3","span":{"begin":112,"end":122},"obj":"Body_part"},{"id":"T4","span":{"begin":332,"end":341},"obj":"Body_part"},{"id":"T6","span":{"begin":857,"end":866},"obj":"Body_part"},{"id":"T7","span":{"begin":1090,"end":1098},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL_0000576"},{"id":"A2","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL_0001054"},{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CL_0000235"},{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CL_0000576"},{"id":"A5","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CL_0001054"},{"id":"A6","pred":"uberon_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/UBERON_2000106"},{"id":"A7","pred":"uberon_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CL_0000576"},{"id":"A8","pred":"uberon_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CL_0001054"},{"subj":"T1","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T3","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T4","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T6","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T7","pred":"source","obj":"Anatomy-UBERON"}]},{"project":"CL-cell","denotations":[{"id":"T1","span":{"begin":103,"end":111},"obj":"Cell"},{"id":"T3","span":{"begin":112,"end":122},"obj":"Cell"},{"id":"T5","span":{"begin":332,"end":341},"obj":"Cell"},{"id":"T7","span":{"begin":1090,"end":1098},"obj":"Cell"}],"attributes":[{"id":"A1","pred":"cl_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL:0000576"},{"id":"A2","pred":"cl_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CL:0001054"},{"id":"A3","pred":"cl_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CL:0000235"},{"id":"A4","pred":"cl_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CL:0000394"},{"id":"A5","pred":"cl_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CL:0000576"},{"id":"A6","pred":"cl_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CL:0001054"},{"id":"A7","pred":"cl_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CL:0000576"},{"id":"A8","pred":"cl_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/CL:0001054"},{"subj":"T1","pred":"source","obj":"CL-cell"},{"subj":"T3","pred":"source","obj":"CL-cell"},{"subj":"T5","pred":"source","obj":"CL-cell"},{"subj":"T7","pred":"source","obj":"CL-cell"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"genia-medco-coref","color":"#ec93cb","default":true},{"id":"jnlpba-st-training","color":"#93e5ec"},{"id":"sentences","color":"#ecd993"},{"id":"NCBITAXON","color":"#bf93ec"},{"id":"pubmed-sentences-benchmark","color":"#93eca5"},{"id":"GENIAcorpus","color":"#ec939a"},{"id":"Glycosmos6-MAT","color":"#93b4ec"},{"id":"Anatomy-MAT","color":"#cfec93"},{"id":"Anatomy-UBERON","color":"#ec93e9"},{"id":"CL-cell","color":"#93ecd5"}]}]}}