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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-18 protein denotes Nuclear factor-IL6
T2 33-52 DNA denotes human IL-4 promoter
T3 56-63 cell_type denotes T cells
T4 65-94 DNA denotes Positive regulatory element I
T5 96-101 DNA denotes PRE-I
T6 115-131 DNA denotes enhancer element
T7 164-179 DNA denotes human IL-4 gene
T8 193-214 protein denotes transcription factors
T9 226-231 DNA denotes PRE-I
T10 247-270 DNA denotes cDNA expression library
T11 276-290 cell_line denotes Jurkat T cells
T12 306-310 DNA denotes cDNA
T13 320-334 protein denotes nuclear factor
T14 335-343 protein denotes (NF)-IL6
T15 359-369 protein denotes C/EBP beta
T16 372-383 RNA denotes NF-IL6 mRNA
T17 397-417 cell_line denotes human Jurkat T cells
T18 429-444 cell_line denotes mouse Th2 clone
T19 445-448 cell_line denotes D10
T20 461-473 cell_line denotes Th1 clone 29
T21 475-482 protein denotes rNF-IL6
T22 539-544 DNA denotes PRE-I
T23 546-551 DNA denotes PRE-I
T24 558-588 protein denotes multiple DNA-protein complexes
T25 616-628 cell_line denotes Jurkat cells
T26 683-689 protein denotes NF-IL6
T27 699-718 protein denotes anti-C/EBP beta Abs
T28 738-744 protein denotes NF-IL6
T29 772-820 DNA denotes chloramphenicol acetyl transferase reporter gene
T30 835-857 protein denotes PRE-I-thymidine kinase
T31 865-884 DNA denotes human IL-4 promoter
T32 906-918 cell_line denotes Jurkat cells
T33 970-990 DNA denotes NF-IL6 binding sites
T34 1024-1038 protein denotes C/EBP proximal
T35 1056-1068 protein denotes C/EBP medial
T36 1114-1120 protein denotes NF-IL6
T37 1170-1189 DNA denotes human IL-4 promoter
T38 1193-1200 cell_type denotes T cells

semrep-sample

Id Subject Object Predicate Lexical cue
E1-ti-1 0-7 cui:C0521447 denotes Nuclear
E2-ti-1 8-14 cui:C1521761 denotes factor
E3-ti-1 15-18 cui:C0021760 denotes IL6
E4-ti-1 33-38 cui:C0020114 denotes human
E5-ti-1 39-43 cui:C0021758 denotes IL-4
E6-ti-1 56-63 cui:C0039194 denotes T cells
T1 33-43 PART_OF denotes human IL-4
T2 53-55 LOCATION_OF denotes in
E1-ab-1 65-73 cui:C1446409 denotes Positive
E2-ab-1 74-92 cui:C1514827 denotes regulatory element
E3-ab-1 108-114 cui:C0442821 denotes strong
E4-ab-1 115-131 cui:C0014290 denotes enhancer element
E5-ab-1 132-141 cui:C0205224 denotes essential
E6-ab-1 146-156 cui:C0185117 denotes expression
E7-ab-1 164-169 cui:C0020114 denotes human
E8-ab-1 170-179 cui:C1334119 denotes IL-4 gene
T3 164-179 PART_OF denotes human IL-4 gene
E1-ab-2 193-214 cui:C0040648 denotes transcription factors
E2-ab-2 226-231 cui:C1446409 denotes PRE-I
E3-ab-2 226-231 cui:C1514827 denotes PRE-I
E4-ab-2 247-251 cui:C0006556 denotes cDNA
E5-ab-2 252-270 cui:C1517023 denotes expression library
E6-ab-2 276-290 cui:C0376448 denotes Jurkat T cells
E7-ab-2 306-310 cui:C0006556 denotes cDNA
E8-ab-2 320-327 cui:C0521447 denotes nuclear
E9-ab-2 328-334 cui:C1521761 denotes factor
E10-ab-2 340-343 cui:C0021760 denotes IL6
E11-ab-2 359-369 cui:C0209548 denotes C/EBP beta
T4 271-275 LOCATION_OF denotes from
E1-ab-3 372-374 cui:C0521447 denotes NF
E2-ab-3 372-374 cui:C1521761 denotes NF
E3-ab-3 375-378 cui:C0021760 denotes IL6
E4-ab-3 379-383 cui:C0035696 denotes mRNA
E5-ab-3 397-417 cui:C0427861 denotes human Jurkat T cells
E6-ab-3 429-434 cui:C0025914 denotes mouse
E7-ab-3 439-444 cui:C1522642 denotes clone
E8-ab-3 445-448 entrez:89832 denotes D10
E9-ab-3 454-457 cui:C1518422 denotes not
E10-ab-3 461-464 entrez:51497 denotes Th1
E11-ab-3 465-470 cui:C1522642 denotes clone
T5 439-448 PART_OF denotes clone D10
T6 422-424 COEXISTS_WITH denotes in
E1-ab-4 475-478 entrez:11074 denotes rNF
E2-ab-4 479-482 cui:C0021760 denotes IL6
E3-ab-4 496-504 cui:C0004611 denotes bacteria
E4-ab-4 539-544 cui:C1446409 denotes PRE-I
E5-ab-4 539-544 cui:C1514827 denotes PRE-I
T7 483-492 INTERACTS_WITH denotes expressed
E1-ab-5 546-551 cui:C1446409 denotes PRE-I
E2-ab-5 546-551 cui:C1514827 denotes PRE-I
E3-ab-5 558-566 cui:C0439064 denotes multiple
E4-ab-5 567-570 cui:C0012854 denotes DNA
E5-ab-5 571-588 cui:C1180347 denotes protein complexes
E6-ab-5 594-610 cui:C1518434 denotes nuclear extracts
E7-ab-5 616-628 cui:C0376448 denotes Jurkat cells
T8 611-615 LOCATION_OF denotes from
E1-ab-6 644-653 cui:C0439855 denotes complexes
E2-ab-6 683-685 cui:C0521447 denotes NF
E3-ab-6 683-685 cui:C1521761 denotes NF
E4-ab-6 686-689 cui:C0021760 denotes IL6
E5-ab-6 706-709 entrez:10682 denotes EBP
E6-ab-6 715-718 cui:C0000833 denotes Abs
E1-ab-7 738-740 cui:C0521447 denotes NF
E2-ab-7 738-740 cui:C1521761 denotes NF
E3-ab-7 741-744 cui:C0021760 denotes IL6
E4-ab-7 754-764 cui:C0185117 denotes expression
E5-ab-7 807-815 cui:C0335038 denotes reporter
E6-ab-7 772-820 cui:C1366498 denotes chloramphenicol acetyl transferase reporter gene
E7-ab-7 835-840 cui:C1446409 denotes PRE-I
E8-ab-7 835-840 cui:C1514827 denotes PRE-I
E9-ab-7 841-857 cui:C0040078 denotes thymidine kinase
E10-ab-7 865-870 cui:C0020114 denotes human
E11-ab-7 871-875 cui:C0021758 denotes IL-4
E12-ab-7 898-902 cui:C0332462 denotes fold
E13-ab-7 906-918 cui:C0376448 denotes Jurkat cells
T9 807-820 PART_OF denotes reporter gene
T10 865-875 PART_OF denotes human IL-4
T11 903-905 LOCATION_OF denotes in
T12 903-905 LOCATION_OF denotes in
E1-ab-8 929-937 cui:C1442161 denotes deletion
E2-ab-8 946-954 cui:C0443289 denotes revealed
E3-ab-8 955-958 cui:C0205448 denotes two
E4-ab-8 959-969 cui:C1524062 denotes additional
E5-ab-8 970-972 cui:C0521447 denotes NF
E6-ab-8 970-972 cui:C1521761 denotes NF
E7-ab-8 973-976 cui:C0021760 denotes IL6
E8-ab-8 977-990 cui:C0005456 denotes binding sites
E9-ab-8 1002-1011 cui:C0733755 denotes positions
E10-ab-8 1026-1029 entrez:10682 denotes EBP
E11-ab-8 1030-1038 cui:C0205107 denotes proximal
E12-ab-8 1058-1061 entrez:10682 denotes EBP
E13-ab-8 1062-1068 cui:C0205098 denotes medial
E1-ab-9 1089-1096 cui:C1274040 denotes results
E2-ab-9 1114-1116 cui:C0521447 denotes NF
E3-ab-9 1114-1116 cui:C1521761 denotes NF
E4-ab-9 1117-1120 cui:C0021760 denotes IL6
E5-ab-9 1136-1162 cui:C0162493 denotes transcriptional activation
E6-ab-9 1170-1175 cui:C0020114 denotes human
E7-ab-9 1176-1180 cui:C0021758 denotes IL-4
E8-ab-9 1193-1200 cui:C0039194 denotes T cells
T13 1170-1180 PART_OF denotes human IL-4
T14 1190-1192 LOCATION_OF denotes in
R1 E5-ti-1 T1 subjectOf IL-4,human IL-4
R2 E4-ti-1 T1 objectOf human,human IL-4
R3 E6-ti-1 T2 subjectOf T cells,in
R4 E5-ti-1 T2 objectOf IL-4,in
R5 E8-ab-1 T3 subjectOf IL-4 gene,human IL-4 gene
R6 E7-ab-1 T3 objectOf human,human IL-4 gene
R7 E6-ab-2 T4 subjectOf Jurkat T cells,from
R8 E3-ab-2 T4 objectOf PRE-I,from
R9 E8-ab-3 T5 subjectOf D10,clone D10
R10 E7-ab-3 T5 objectOf clone,clone D10
R11 E3-ab-3 T6 subjectOf IL6,in
R12 E8-ab-3 T6 objectOf D10,in
R13 E2-ab-4 T7 subjectOf IL6,expressed
R14 E3-ab-4 T7 objectOf bacteria,expressed
R15 E7-ab-5 T8 subjectOf Jurkat cells,from
R16 E5-ab-5 T8 objectOf protein complexes,from
R17 E6-ab-7 T9 subjectOf chloramphenicol acetyl transferase reporter gene,reporter gene
R18 E5-ab-7 T9 objectOf reporter,reporter gene
R19 E11-ab-7 T10 subjectOf IL-4,human IL-4
R20 E10-ab-7 T10 objectOf human,human IL-4
R21 E13-ab-7 T11 subjectOf Jurkat cells,in
R22 E11-ab-7 T11 objectOf IL-4,in
R23 E13-ab-7 T12 subjectOf Jurkat cells,in
R24 E9-ab-7 T12 objectOf thymidine kinase,in
R25 E7-ab-9 T13 subjectOf IL-4,human IL-4
R26 E6-ab-9 T13 objectOf human,human IL-4
R27 E8-ab-9 T14 subjectOf T cells,in
R28 E7-ab-9 T14 objectOf IL-4,in

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-64 Sentence denotes Nuclear factor-IL6 activates the human IL-4 promoter in T cells.
S2 65-180 Sentence denotes Positive regulatory element I (PRE-I) is a strong enhancer element essential for expression of the human IL-4 gene.
S3 181-371 Sentence denotes To identify transcription factors binding to PRE-I, we screened a cDNA expression library from Jurkat T cells and isolated a cDNA encoding nuclear factor (NF)-IL6 (also known as C/EBP beta).
S4 372-474 Sentence denotes NF-IL6 mRNA was found in human Jurkat T cells and in the mouse Th2 clone D10, but not in Th1 clone 29.
S5 475-545 Sentence denotes rNF-IL6 expressed in bacteria was shown to specifically bind to PRE-I.
S6 546-629 Sentence denotes PRE-I forms multiple DNA-protein complexes with nuclear extracts from Jurkat cells.
S7 630-719 Sentence denotes Some of these complexes were demonstrated to contain NF-IL6 by using anti-C/EBP beta Abs.
S8 720-919 Sentence denotes Overexpression of NF-IL6 enhanced expression of the chloramphenicol acetyl transferase reporter gene linked to the PRE-I-thymidine kinase or the human IL-4 promoter more than 10-fold in Jurkat cells.
S9 920-1084 Sentence denotes Promoter deletion studies revealed two additional NF-IL6 binding sites located at positions -44 to -36 (C/EBP proximal) and -87 to -79 (C/EBP medial), respectively.
S10 1085-1201 Sentence denotes Our results demonstrate that NF-IL6 is involved in transcriptional activation of the human IL-4 promoter in T cells.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-18 NP denotes Nuclear factor-IL6
C2 29-52 NP denotes the human IL-4 promoter
C3 56-63 NP denotes T cells
C4 65-102 NP denotes Positive regulatory element I (PRE-I)
C5 226-231 NP denotes PRE-I
C6 276-290 NP denotes Jurkat T cells
C7 304-370 NP denotes a cDNA encoding nuclear factor (NF)-IL6 (also known as C/EBP beta)
C8 539-544 NP denotes PRE-I
C9 546-551 NP denotes PRE-I
C10 558-588 NP denotes multiple DNA-protein complexes
C11 616-628 NP denotes Jurkat cells
C12 638-653 NP denotes these complexes
C13 683-689 NP denotes NF-IL6
C14 738-744 NP denotes NF-IL6
C15 861-884 NP denotes the human IL-4 promoter
C16 906-918 NP denotes Jurkat cells
C17 1114-1120 NP denotes NF-IL6
C18 1166-1189 NP denotes the human IL-4 promoter
C19 1193-1200 NP denotes T cells
R1 C5 C4 coref-ident PRE-I,Positive regulatory element I (PRE-I)
R2 C7 C1 coref-ident a cDNA encoding nuclear factor (NF)-IL6 (also known as C/EBP beta),Nuclear factor-IL6
R3 C8 C5 coref-ident PRE-I,PRE-I
R4 C9 C8 coref-ident PRE-I,PRE-I
R5 C11 C6 coref-ident Jurkat cells,Jurkat T cells
R6 C12 C10 coref-ident these complexes,multiple DNA-protein complexes
R7 C13 C7 coref-ident NF-IL6,a cDNA encoding nuclear factor (NF)-IL6 (also known as C/EBP beta)
R8 C14 C13 coref-ident NF-IL6,NF-IL6
R9 C15 C2 coref-ident the human IL-4 promoter,the human IL-4 promoter
R10 C16 C11 coref-ident Jurkat cells,Jurkat cells
R11 C17 C14 coref-ident NF-IL6,NF-IL6
R12 C18 C15 coref-ident the human IL-4 promoter,the human IL-4 promoter
R13 C19 C3 coref-ident T cells,T cells

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-18 protein_molecule denotes Nuclear factor-IL6
T2 33-52 DNA_domain_or_region denotes human IL-4 promoter
T3 56-63 cell_type denotes T cells
T4 65-94 DNA_domain_or_region denotes Positive regulatory element I
T5 96-101 DNA_domain_or_region denotes PRE-I
T6 115-131 DNA_domain_or_region denotes enhancer element
T7 164-179 DNA_domain_or_region denotes human IL-4 gene
T8 193-214 protein_family_or_group denotes transcription factors
T9 226-231 DNA_domain_or_region denotes PRE-I
T10 247-270 DNA_family_or_group denotes cDNA expression library
T11 276-282 cell_line denotes Jurkat
T12 283-290 cell_type denotes T cells
T13 306-310 DNA_family_or_group denotes cDNA
T14 320-334 protein_family_or_group denotes nuclear factor
T15 335-343 protein_molecule denotes (NF)-IL6
T16 359-369 protein_molecule denotes C/EBP beta
T17 372-383 RNA_molecule denotes NF-IL6 mRNA
T18 397-409 cell_line denotes human Jurkat
T19 410-417 cell_type denotes T cells
T20 429-444 cell_line denotes mouse Th2 clone
T21 445-448 cell_line denotes D10
T22 461-473 cell_line denotes Th1 clone 29
T23 475-482 protein_molecule denotes rNF-IL6
T24 496-504 mono_cell denotes bacteria
T25 539-544 DNA_domain_or_region denotes PRE-I
T26 546-551 DNA_domain_or_region denotes PRE-I
T27 558-588 protein_complex denotes multiple DNA-protein complexes
T28 594-610 cell_component denotes nuclear extracts
T29 616-628 cell_line denotes Jurkat cells
T30 683-689 protein_molecule denotes NF-IL6
T31 699-704 protein_molecule denotes anti-
T32 704-714 protein_molecule denotes C/EBP beta
T33 738-744 protein_molecule denotes NF-IL6
T34 772-806 protein_molecule denotes chloramphenicol acetyl transferase
T35 835-840 DNA_domain_or_region denotes PRE-I
T36 865-875 protein_molecule denotes human IL-4
T37 906-918 cell_line denotes Jurkat cells
T38 970-976 protein_molecule denotes NF-IL6
T39 1024-1038 protein_domain_or_region denotes C/EBP proximal
T40 1056-1068 protein_domain_or_region denotes C/EBP medial
T41 1114-1120 protein_molecule denotes NF-IL6
T42 1136-1162 other_name denotes transcriptional activation
T43 1170-1180 protein_molecule denotes human IL-4
T44 1193-1200 cell_type denotes T cells

metamap-sample

Id Subject Object Predicate Lexical cue
T1 1171-1176 C0086418 denotes uman
T2 866-871 C0086418 denotes uman
T3 165-170 C0086418 denotes uman
T4 34-39 C0086418 denotes uman
T5 1194-1201 C0039194 denotes cells.
T6 57-64 C0039194 denotes cells.
T7 1177-1179 C0021764 denotes L-
T8 40-42 C0021764 denotes L-
T9 20-29 C1515877 denotes ctivates
T10 1118-1121 C1334122 denotes L6
T11 687-690 C1334122 denotes L6
T12 480-483 C1334122 denotes L6
T13 376-379 C1334122 denotes L6
T14 341-344 C1334122 denotes L6
T15 16-19 C1334122 denotes L6
T16 1118-1121 C2983957 denotes L6
T17 687-690 C2983957 denotes L6
T18 480-483 C2983957 denotes L6
T19 376-379 C2983957 denotes L6
T20 341-344 C2983957 denotes L6
T21 16-19 C2983957 denotes L6
T22 1182-1190 C0086860 denotes romoter
T23 921-928 C0086860 denotes romoter
T24 877-885 C0086860 denotes romoter
T25 45-53 C0086860 denotes romoter
T26 1115-1117 C1521761 denotes F-
T27 971-973 C1521761 denotes F-
T28 739-741 C1521761 denotes F-
T29 684-686 C1521761 denotes F-
T30 373-375 C1521761 denotes F-
T31 329-335 C1521761 denotes actor
T32 9-15 C1521761 denotes actor-
T33 1115-1117 C0521447 denotes F-
T34 971-973 C0521447 denotes F-
T35 739-741 C0521447 denotes F-
T36 684-686 C0521447 denotes F-
T37 373-375 C0521447 denotes F-
T38 321-328 C0521447 denotes uclear
T39 1-8 C0521447 denotes uclear
T40 547-552 C0034987 denotes RE-I
T41 540-545 C0034987 denotes RE-I.
T42 227-232 C0034987 denotes RE-I,
T43 75-93 C0034987 denotes egulatory element
T44 907-919 C0376448 denotes urkat cells.
T45 836-841 C0021968 denotes RE-I-
T46 540-545 C0021968 denotes RE-I.
T47 227-232 C0021968 denotes RE-I,
T48 430-435 C0026809 denotes ouse
T49 116-132 C0014290 denotes nhancer element
T50 264-271 C0751608 denotes ibrary
T51 836-841 C1514241 denotes RE-I-
T52 547-552 C1514241 denotes RE-I
T53 540-545 C1514241 denotes RE-I.
T54 227-232 C1514241 denotes RE-I,
T55 66-74 C1514241 denotes ositive
T56 547-552 C0221138 denotes RE-I
T57 540-545 C0221138 denotes RE-I.
T58 227-232 C0221138 denotes RE-I,
T59 94-95 C0221138 denotes
T60 930-938 C1511760 denotes eletion
T61 380-384 C0035696 denotes RNA
T62 673-675 C1883351 denotes o
T63 516-518 C1883351 denotes o
T64 182-184 C1883351 denotes o
T65 194-215 C0040648 denotes ranscription factors
T66 836-841 C1704735 denotes RE-I-
T67 540-545 C1704735 denotes RE-I.
T68 227-232 C1704735 denotes RE-I,
T69 755-765 C0185117 denotes xpression
T70 253-263 C0185117 denotes xpression
T71 147-157 C0185117 denotes xpression
T72 532-536 C1167622 denotes ind
T73 216-223 C1167622 denotes inding
T74 296-304 C1548221 denotes solated
T75 676-683 C2700400 denotes ontain
T76 312-320 C2700640 denotes ncoding
T77 746-754 C2349975 denotes nhanced
T78 553-558 C1522492 denotes orms
T79 1063-1069 C0205098 denotes edial)
T80 1031-1039 C0205107 denotes roximal)
T81 939-946 C2603343 denotes tudies
T82 694-698 C1524063 denotes sing
T83 1090-1097 C2825142 denotes esults
T84 237-245 C0220908 denotes creened
T85 510-515 C1547282 denotes hown
T86 974-985 C1149241 denotes L6 binding
T87 568-589 C2246376 denotes NA-protein complexes
T88 986-991 C0205145 denotes ites
T89 497-505 C0004611 denotes acteria
T90 631-635 C3540770 denotes ome
T91 253-271 C1517023 denotes xpression library
T92 645-654 C1704241 denotes omplexes
T93 351-356 C0205309 denotes nown
T94 462-464 C1423842 denotes h1
T95 455-458 C1518422 denotes ot
T96 1003-1012 C0733755 denotes ositions
T97 389-394 C0150312 denotes ound
T98 419-422 C1515981 denotes nd
T99 133-142 C0205224 denotes ssential
T100 1125-1133 C1314939 denotes nvolved
T101 822-828 C1517892 denotes inked
T102 476-479 C1424157 denotes NF-
T103 700-706 C0432626 denotes nti-C/
T104 109-115 C0442821 denotes trong
T105 711-715 C2004068 denotes eta
T106 960-970 C1524062 denotes dditional
T107 947-955 C0443289 denotes evealed
T108 956-959 C0205448 denotes wo
T109 171-180 C1708435 denotes L-4 gene.
T110 248-263 C1515563 denotes DNA expression
T111 559-567 C0439064 denotes ultiple
T112 286-291 C0007634 denotes ells
T113 595-611 C1518434 denotes uclear extracts
T114 808-816 C1705915 denotes eporter
T115 899-903 C0332462 denotes old