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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 10-14 DNA denotes cDNA
T2 26-36 cell_type denotes NK/T cells
T3 92-102 DNA denotes cDNA clone
T4 104-108 DNA denotes B4-2
T5 130-182 DNA denotes natural killer (NK) minus T cell subtractive library
T6 188-192 DNA denotes B4-2
T7 212-216 RNA denotes mRNA
T8 260-274 protein denotes 327 aa protein
T9 334-342 DNA denotes B4-2 DNA
T10 446-450 DNA denotes B4-2
T11 516-542 protein denotes nuclear targeting sequence
T12 560-571 protein denotes SPXX motifs
T13 602-626 protein denotes gene regulatory proteins
T14 664-668 DNA denotes B4-2
T15 716-727 protein denotes SH3 domains
T16 769-773 DNA denotes B4-2
T17 783-805 DNA denotes lymphoid specific gene
T18 828-846 cell_line denotes hepatoma cell line
T19 952-968 protein denotes recombinant B4-2
T20 982-999 protein denotes 32-34 kDa protein
T21 1003-1014 cell_type denotes lymphocytes

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 8-36 NP denotes a cDNA from human NK/T cells
C2 37-42 NP denotes which
C3 53-88 NP denotes a protein with high proline content
C4 90-102 NP denotes A cDNA clone
C5 104-108 NP denotes B4-2
C6 184-198 NP denotes The B4-2 clone
C7 239-241 NP denotes It
C8 250-319 NP denotes a deduced 327 aa protein with a calculated molecular mass of 35.2 kDa
C9 446-450 NP denotes B4-2
C10 552-571 NP denotes several SPXX motifs
C11 572-577 NP denotes which
C12 664-668 NP denotes B4-2
C13 769-773 NP denotes B4-2
R1 C2 C1 coref-relat which,a cDNA from human NK/T cells
R2 C5 C4 coref-appos B4-2,A cDNA clone
R3 C6 C4 coref-ident The B4-2 clone,A cDNA clone
R4 C7 C6 coref-pron It,The B4-2 clone
R5 C8 C3 coref-ident a deduced 327 aa protein with a calculated molecular mass of 35.2 kDa,a protein with high proline content
R6 C9 C6 coref-ident B4-2,The B4-2 clone
R7 C11 C10 coref-relat which,several SPXX motifs
R8 C12 C9 coref-ident B4-2,B4-2
R9 C13 C12 coref-ident B4-2,B4-2

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-89 Sentence denotes Cloning a cDNA from human NK/T cells which codes for a protein with high proline content.
S2 90-183 Sentence denotes A cDNA clone, B4-2, was isolated from a natural killer (NK) minus T cell subtractive library.
S3 184-238 Sentence denotes The B4-2 clone coded for an mRNA of 2061 bp in length.
S4 239-320 Sentence denotes It encodes a deduced 327 aa protein with a calculated molecular mass of 35.2 kDa.
S5 321-436 Sentence denotes Searching of B4-2 DNA and protein sequences against various databases revealed no high homology to other sequences.
S6 437-627 Sentence denotes However, B4-2 has an unusually high proline content (13%), contains a putative nuclear targeting sequence, and has several SPXX motifs which are frequently found in gene regulatory proteins.
S7 628-728 Sentence denotes One of the stretches of prolines in B4-2 closely resembles the ligand for proteins with SH3 domains.
S8 729-913 Sentence denotes Northern hybridization data showed that B4-2 is not a lymphoid specific gene and is expressed in a hepatoma cell line and also weakly transcribed or absent in a variety of other cells.
S9 914-1015 Sentence denotes A polyclonal antiserum raised against recombinant B4-2 recognizes a 32-34 kDa protein in lymphocytes.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 10-14 DNA_family_or_group denotes cDNA
T2 26-29 cell_type denotes NK/
T3 29-36 cell_type denotes T cells
T4 73-80 amino_acid_monomer denotes proline
T5 92-102 DNA_family_or_group denotes cDNA clone
T6 104-108 DNA_molecule denotes B4-2
T7 130-182 DNA_family_or_group denotes natural killer (NK) minus T cell subtractive library
T8 188-192 DNA_molecule denotes B4-2
T9 212-216 RNA_family_or_group denotes mRNA
T10 260-274 protein_molecule denotes 327 aa protein
T11 293-307 other_name denotes molecular mass
T12 334-338 DNA_molecule denotes B4-2
T13 347-364 other_name denotes protein sequences
T14 446-450 DNA_molecule denotes B4-2
T15 473-480 amino_acid_monomer denotes proline
T16 516-542 protein_domain_or_region denotes nuclear targeting sequence
T17 602-626 protein_family_or_group denotes gene regulatory proteins
T18 652-660 amino_acid_monomer denotes prolines
T19 664-668 DNA_molecule denotes B4-2
T20 716-727 protein_domain_or_region denotes SH3 domains
T21 769-773 DNA_molecule denotes B4-2
T22 783-805 DNA_family_or_group denotes lymphoid specific gene
T23 828-846 cell_line denotes hepatoma cell line
T24 916-936 other_organic_compound denotes polyclonal antiserum
T25 952-963 protein_molecule denotes recombinant
T26 964-968 DNA_molecule denotes B4-2
T27 982-999 protein_molecule denotes 32-34 kDa protein
T28 1003-1014 cell_type denotes lymphocytes

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 828-836 Disease denotes hepatoma http://purl.obolibrary.org/obo/MONDO_0007256

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 20-25 OrganismTaxon denotes human 9606

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 156-162 Body_part denotes T cell http://purl.obolibrary.org/obo/CL_0000084
T2 1003-1014 Body_part denotes lymphocytes http://purl.obolibrary.org/obo/CL_0000542

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 29-36 Cell denotes T cells http://purl.obolibrary.org/obo/CL:0000084
T2 156-162 Cell denotes T cell http://purl.obolibrary.org/obo/CL:0000084
T3 1003-1014 Cell denotes lymphocytes http://purl.obolibrary.org/obo/CL:0000542