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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 161-165 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T2 552-559 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T3 567-572 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T4 1012-1016 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 567-572 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T2 1012-1016 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 0-8 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 152-175 Disease denotes squamous cell carcinoma http://purl.obolibrary.org/obo/MONDO_0005096
T3 166-175 Disease denotes carcinoma http://purl.obolibrary.org/obo/MONDO_0004993
T4 188-205 Disease denotes esophageal cancer http://purl.obolibrary.org/obo/MONDO_0007576|http://purl.obolibrary.org/obo/MONDO_0019086
T6 199-205 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T7 219-239 Disease denotes non-Hodgkin lymphoma http://purl.obolibrary.org/obo/MONDO_0011508|http://purl.obolibrary.org/obo/MONDO_0018908
T9 223-239 Disease denotes Hodgkin lymphoma http://purl.obolibrary.org/obo/MONDO_0004952
T10 231-239 Disease denotes lymphoma http://purl.obolibrary.org/obo/MONDO_0005062
T11 275-283 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 285-294 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 421-429 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 516-527 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T15 1012-1023 Disease denotes lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T16 1017-1023 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 161-165 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T2 567-572 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T3 1012-1016 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T4 1012-1016 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 552-559 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T2 801-810 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T3 828-837 Chemical denotes ritonavir http://purl.obolibrary.org/obo/CHEBI_45409
T4 842-851 Chemical denotes lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T5 869-887 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 152-175 Phenotype denotes squamous cell carcinoma http://purl.obolibrary.org/obo/HP_0002860
T2 199-205 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T3 219-239 Phenotype denotes non-Hodgkin lymphoma http://purl.obolibrary.org/obo/HP_0012539
T4 373-378 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T5 516-527 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T6 1012-1023 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 0-8 Disease denotes COVID-19 MESH:C000657245
3 94-102 Species denotes patients Tax:9606
27 121-129 Species denotes patients Tax:9606
28 142-175 Disease denotes pulmonary squamous cell carcinoma MESH:D002294
29 199-205 Disease denotes cancer MESH:D009369
30 219-239 Disease denotes non-Hodgkin lymphoma MESH:D008228
31 257-273 Species denotes coronavirus 2019 Tax:2697049
32 275-283 Disease denotes COVID-19 MESH:C000657245
33 285-294 Disease denotes infection MESH:D007239
34 349-357 Species denotes patients Tax:9606
35 373-378 Disease denotes fever MESH:D005334
36 421-429 Disease denotes COVID-19 MESH:C000657245
37 516-527 Disease denotes lymphopenia MESH:D008231
38 541-559 Gene denotes C-reactive protein Gene:1401
39 561-564 Gene denotes CRP Gene:1401
40 655-681 Disease denotes interstitial abnormalities MESH:D009395
41 770-777 Species denotes patient Tax:9606
42 783-791 Species denotes patients Tax:9606
43 828-837 Chemical denotes ritonavir MESH:D019438
44 842-851 Chemical denotes lopinavir MESH:D061466
45 869-887 Chemical denotes hydroxychloroquine MESH:D006886
46 912-920 Species denotes patients Tax:9606
47 935-947 Disease denotes cancers died MESH:D003643
48 999-1006 Species denotes patient Tax:9606
49 1012-1023 Disease denotes lung cancer MESH:D008175

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-27 Sentence denotes COVID-19 outbreak in Italy:
T2 28-103 Sentence denotes Clinical-radiological presentation and outcome in three oncologic patients.
T3 104-344 Sentence denotes We present three patients affected by pulmonary squamous cell carcinoma, metastatic esophageal cancer and advanced non-Hodgkin lymphoma, who incurred in coronavirus 2019 (COVID-19) infection during the early phase of epidemic wave in Italy.
T4 345-379 Sentence denotes All patients presented with fever.
T5 380-474 Sentence denotes Social contact with subject positive for COVID-19 was declared in only one of the three cases.
T6 475-566 Sentence denotes In all cases, laboratory findings showed lymphopenia and elevated C-reactive protein (CRP).
T7 567-778 Sentence denotes Chest x-ray and computed tomography showed bilateral ground-glass opacities, shadowing, interstitial abnormalities, and "crazy paving" pattern which evolved with superimposition of consolidations in one patient.
T8 779-888 Sentence denotes All patients received antiviral therapy based on ritonavir and lopinavir, associated with hydroxychloroquine.
T9 889-1066 Sentence denotes Despite treatment, two patients with advanced cancers died after 39 and 17 days of hospitalization, while the patient with lung cancer was dismissed at home, in good conditions.

hydroxychloroquine

Id Subject Object Predicate Lexical cue hp_id
T1 152-175 Phenotype denotes squamous cell carcinoma http://purl.obolibrary.org/obo/HP_0002860
T2 199-205 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T3 219-239 Phenotype denotes non-Hodgkin lymphoma http://purl.obolibrary.org/obo/HP_0012539
T4 373-378 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T5 516-527 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T6 1012-1023 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526