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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 53-60 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T2 299-306 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T3 310-317 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T4 405-413 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T5 453-458 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T6 515-523 Body_part denotes fat body http://purl.org/sig/ont/fma/fma58616
T7 538-543 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T8 565-572 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T9 668-675 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T10 694-701 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T11 778-783 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T12 868-876 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T13 1000-1007 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T14 1024-1029 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T15 1074-1081 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T16 1178-1192 Body_part denotes immunoglobulin http://purl.org/sig/ont/fma/fma62871

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 453-458 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T2 778-783 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T3 1024-1029 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 36-44 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T2 121-134 Disease denotes viral disease http://purl.obolibrary.org/obo/MONDO_0005108
T3 224-232 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 282-290 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 854-862 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 987-995 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 83-91 http://purl.obolibrary.org/obo/NCBITaxon_7091 denotes silkworm
T2 115-116 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 173-178 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T4 249-250 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 344-352 http://purl.obolibrary.org/obo/NCBITaxon_7091 denotes silkworm
T6 444-452 http://purl.obolibrary.org/obo/NCBITaxon_7091 denotes silkworm
T7 515-518 http://purl.obolibrary.org/obo/UBERON_0001013 denotes fat
T8 538-543 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9 769-777 http://purl.obolibrary.org/obo/NCBITaxon_7091 denotes silkworm
T10 865-867 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T11 865-867 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T12 936-945 http://purl.obolibrary.org/obo/NCBITaxon_7091 denotes silkworms

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 299-306 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T1 53-60 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T3 310-317 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T4 405-413 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T5 565-572 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T6 668-675 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T7 694-701 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T8 804-813 Chemical denotes oligomers http://purl.obolibrary.org/obo/CHEBI_132554
T9 865-867 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T10 1000-1007 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T11 1074-1081 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T12 1149-1156 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1178-1203 http://purl.obolibrary.org/obo/GO_0002377 denotes immunoglobulin production

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 36-46 Species denotes SARS-CoV-2 Tax:2697049
3 83-91 Species denotes silkworm Tax:7091
19 121-134 Disease denotes viral disease MESH:D001102
20 224-232 Disease denotes COVID-19 MESH:C000657245
21 282-292 Species denotes SARS-CoV-2 Tax:2697049
22 293-298 Gene denotes spike Gene:43740568
23 308-317 Gene denotes S protein Gene:43740568
24 344-352 Species denotes silkworm Tax:7091
25 444-452 Species denotes silkworm Tax:7091
26 563-572 Gene denotes S protein Gene:43740568
27 692-701 Gene denotes S protein Gene:43740568
28 769-777 Species denotes silkworm Tax:7091
29 854-864 Species denotes SARS-CoV-2 Tax:2697049
30 936-945 Species denotes silkworms Tax:7091
31 987-997 Species denotes SARS-CoV-2 Tax:2697049
32 998-1007 Gene denotes S protein Gene:43740568
33 1072-1081 Gene denotes S protein Gene:43740568

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-99 Sentence denotes Efficient production of recombinant SARS-CoV-2 spike protein using the baculovirus-silkworm system.
T2 100-219 Sentence denotes In the case of a new viral disease outbreak, an immediate development of virus detection kits and vaccines is required.
T3 220-371 Sentence denotes For COVID-19, we established a rapid production procedure for SARS-CoV-2 spike protein (S protein) by using the baculovirus-silkworm expression system.
T4 372-544 Sentence denotes The baculovirus vector-derived S proteins were successfully secreted to silkworm serum, whereas those formed insoluble structure in the larval fat body and the pupal cells.
T5 545-687 Sentence denotes The ectodomain of S protein with the native sequence was cleaved by the host furin-protease, resulting in less recombinant protein production.
T6 688-877 Sentence denotes The S protein modified in furin protease-target site was efficiently secreted to silkworm serum and was purified as oligomers, which showed immunoreactivity for anti-SARS-CoV-2 S2 antibody.
T7 878-1048 Sentence denotes By using the direct transfection of recombinant bacmid to silkworms, we achieved the efficient production of SARS-CoV-2 S protein as fetal bovine serum (FBS)-free system.
T8 1049-1218 Sentence denotes The resultant purified S protein would be useful tools for the development of immunodetection kits, antigen for immunization for immunoglobulin production, and vaccines.

silkwormbase

Id Subject Object Predicate Lexical cue
T1 36-46 Species:2697049 denotes SARS-CoV-2
T10 563-572 Gene:7448 denotes S protein
T11 692-701 Gene:7448 denotes S protein
T12 769-777 Species:7091 denotes silkworm
T13 854-864 Species:2697049 denotes SARS-CoV-2
T14 936-945 Species:7091 denotes silkworms
T15 987-997 Species:2697049 denotes SARS-CoV-2
T16 998-1007 Gene:7448 denotes S protein
T17 1072-1081 Gene:7448 denotes S protein
T2 83-91 Species:7091 denotes silkworm
T3 121-134 Disease:MESH:D001102 denotes viral disease
T4 224-232 Disease:MESH:C000657245 denotes COVID-19
T5 282-292 Species:2697049 denotes SARS-CoV-2
T6 293-298 Gene:43740568 denotes spike
T7 308-317 Gene:7448 denotes S protein
T8 344-352 Species:7091 denotes silkworm
T9 444-452 Species:7091 denotes silkworm

LitCovid_AGAC_only

Id Subject Object Predicate Lexical cue
p64037s3 563-564 Protein denotes S
p64037s4 565-572 Protein denotes protein
p64037s20 651-655 NegReg denotes less
p64037s21 656-686 MPA denotes recombinant protein production

silkworm

Id Subject Object Predicate Lexical cue
T1 36-46 Species:2697049 denotes SARS-CoV-2
T2 83-91 Species:7091 denotes silkworm
T3 121-134 Disease:MESH:D001102 denotes viral disease
T4 224-232 Disease:MESH:C000657245 denotes COVID-19
T5 282-292 Species:2697049 denotes SARS-CoV-2
T6 293-298 Gene:43740568 denotes spike
T7 308-317 Gene:7448 denotes S protein
T8 344-352 Species:7091 denotes silkworm
T9 444-452 Species:7091 denotes silkworm
T10 563-572 Gene:7448 denotes S protein
T11 692-701 Gene:7448 denotes S protein
T12 769-777 Species:7091 denotes silkworm
T13 854-864 Species:2697049 denotes SARS-CoV-2
T14 936-945 Species:7091 denotes silkworms
T15 987-997 Species:2697049 denotes SARS-CoV-2
T16 998-1007 Gene:7448 denotes S protein
T17 1072-1081 Gene:7448 denotes S protein