PubMed:32234343
Annnotations
LitCovid-OGER-BB
{"project":"LitCovid-OGER-BB","denotations":[{"id":"T1","span":{"begin":45,"end":53},"obj":"SP_7"},{"id":"T2","span":{"begin":188,"end":196},"obj":"SP_7"},{"id":"T3","span":{"begin":251,"end":263},"obj":"GO:0000003"},{"id":"T4","span":{"begin":995,"end":1003},"obj":"SP_7"},{"id":"T5","span":{"begin":1064,"end":1072},"obj":"SP_7"}],"namespaces":[{"prefix":"NCBITaxon","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"}],"text":"Monitoring Transmissibility and Mortality of COVID-19 in Europe.\nOBJECTIVES: As a global pandemic is inevitable, real-time monitoring of transmission is vital for containing the spread of COVID-19. The main objective was to report real-time effective reproduction numbers (R(t)) case fatality rate (CFR).\nMETHODS: Data were mainly obtained from WHO website, up to 9 March 2020. R(t) was estimated by exponential growth rate (EG) and time dependent (TD) methods. \"R0\" package in R was employed to estimate R(t) by fitting the existing epidemic curve. Both naïve CFR (nCFR) and adjust CFR (aCFR) were estimated.\nRESULTS: In EG method, R(t) was 3.27 [3.17-3.38] for Italy, 6.32 [5.72-6.99] for France, 6.07 [5.51-6.69] for Germany, 5.08 [4.51-5.74] for Spain. With TD method, the R value for March 9 was 3.10 [2.21-4.11] for Italy, 6.56 [2.04-12.26] for France, 4.43 [1.83-7.92] for Germany, and 3.95 [0-10.19] for Spain.\nCONCLUSIONS: This study provides important findings on an early outbreak of COVID-19 in Europe. Due to the recent rapid increase in new cases of COVID-19, real-time monitoring of the transmissibility and mortality in Spain and France is a priority."}
LitCovid-sentences-v1
{"project":"LitCovid-sentences-v1","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":64},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":65,"end":76},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":77,"end":197},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":198,"end":304},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":305,"end":313},"obj":"Sentence"},{"id":"TextSentencer_T6","span":{"begin":314,"end":377},"obj":"Sentence"},{"id":"TextSentencer_T7","span":{"begin":378,"end":549},"obj":"Sentence"},{"id":"TextSentencer_T8","span":{"begin":550,"end":609},"obj":"Sentence"},{"id":"TextSentencer_T9","span":{"begin":610,"end":618},"obj":"Sentence"},{"id":"TextSentencer_T10","span":{"begin":619,"end":756},"obj":"Sentence"},{"id":"TextSentencer_T11","span":{"begin":757,"end":918},"obj":"Sentence"},{"id":"TextSentencer_T12","span":{"begin":919,"end":931},"obj":"Sentence"},{"id":"TextSentencer_T13","span":{"begin":932,"end":1014},"obj":"Sentence"},{"id":"TextSentencer_T14","span":{"begin":1015,"end":1167},"obj":"Sentence"}],"text":"Monitoring Transmissibility and Mortality of COVID-19 in Europe.\nOBJECTIVES: As a global pandemic is inevitable, real-time monitoring of transmission is vital for containing the spread of COVID-19. The main objective was to report real-time effective reproduction numbers (R(t)) case fatality rate (CFR).\nMETHODS: Data were mainly obtained from WHO website, up to 9 March 2020. R(t) was estimated by exponential growth rate (EG) and time dependent (TD) methods. \"R0\" package in R was employed to estimate R(t) by fitting the existing epidemic curve. Both naïve CFR (nCFR) and adjust CFR (aCFR) were estimated.\nRESULTS: In EG method, R(t) was 3.27 [3.17-3.38] for Italy, 6.32 [5.72-6.99] for France, 6.07 [5.51-6.69] for Germany, 5.08 [4.51-5.74] for Spain. With TD method, the R value for March 9 was 3.10 [2.21-4.11] for Italy, 6.56 [2.04-12.26] for France, 4.43 [1.83-7.92] for Germany, and 3.95 [0-10.19] for Spain.\nCONCLUSIONS: This study provides important findings on an early outbreak of COVID-19 in Europe. Due to the recent rapid increase in new cases of COVID-19, real-time monitoring of the transmissibility and mortality in Spain and France is a priority."}
LitCovid-TimeML
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Transmissibility and Mortality of COVID-19 in Europe.\nOBJECTIVES: As a global pandemic is inevitable, real-time monitoring of transmission is vital for containing the spread of COVID-19. The main objective was to report real-time effective reproduction numbers (R(t)) case fatality rate (CFR).\nMETHODS: Data were mainly obtained from WHO website, up to 9 March 2020. R(t) was estimated by exponential growth rate (EG) and time dependent (TD) methods. \"R0\" package in R was employed to estimate R(t) by fitting the existing epidemic curve. Both naïve CFR (nCFR) and adjust CFR (aCFR) were estimated.\nRESULTS: In EG method, R(t) was 3.27 [3.17-3.38] for Italy, 6.32 [5.72-6.99] for France, 6.07 [5.51-6.69] for Germany, 5.08 [4.51-5.74] for Spain. With TD method, the R value for March 9 was 3.10 [2.21-4.11] for Italy, 6.56 [2.04-12.26] for France, 4.43 [1.83-7.92] for Germany, and 3.95 [0-10.19] for Spain.\nCONCLUSIONS: This study provides important findings on an early outbreak of COVID-19 in Europe. Due to the recent rapid increase in new cases of COVID-19, real-time monitoring of the transmissibility and mortality in Spain and France is a priority."}
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