PubMed:31686039
Annnotations
GoldHamster
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2 | 347-369 | D017173 | denotes | Caenorhabditis elegans |
T3 | 347-369 | 6239 | denotes | Caenorhabditis elegans |
T5 | 394-402 | SO:0000001 | denotes | sequence |
T6 | 506-510 | PR:000022679 | denotes | fold |
T7 | 506-510 | PR:Q2FZJ6 | denotes | fold |
T8 | 506-510 | PR:A5I112 | denotes | fold |
T9 | 506-510 | PR:P24186 | denotes | fold |
T10 | 523-528 | PR:Q07342 | denotes | axial |
T11 | 937-942 | SO:0000343 | denotes | match |
PubMed_ArguminSci
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 92-275 | DRI_Outcome | denotes | We demonstrate that a deep neural network can be trained to virtually refocus a two-dimensional fluorescence image onto user-defined three-dimensional (3D) surfaces within the sample. |
T2 | 276-606 | DRI_Approach | denotes | Using this method, termed Deep-Z, we imaged the neuronal activity of a Caenorhabditis elegans worm in 3D using a time sequence of fluorescence images acquired at a single focal plane, digitally increasing the depth-of-field by 20-fold without any axial scanning, additional hardware or a trade-off of imaging resolution and speed. |
T3 | 607-789 | DRI_Outcome | denotes | Furthermore, we demonstrate that this approach can correct for sample drift, tilt and other aberrations, all digitally performed after the acquisition of a single fluorescence image. |
T4 | 790-1006 | DRI_Background | denotes | This framework also cross-connects different imaging modalities to each other, enabling 3D refocusing of a single wide-field fluorescence image to match confocal microscopy images acquired at different sample planes. |
T5 | 1007-1207 | DRI_Outcome | denotes | Deep-Z has the potential to improve volumetric imaging speed while reducing challenges relating to sample drift, aberration and defocusing that are associated with standard 3D fluorescence microscopy. |
Goldhamster2_Cellosaurus
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 92-94 | CVCL_5M23|Cancer_cell_line|Mesocricetus auratus | denotes | We |
T2 | 112-113 | CVCL_6479|Finite_cell_line|Mus musculus | denotes | a |
T3 | 170-171 | CVCL_6479|Finite_cell_line|Mus musculus | denotes | a |
T4 | 310-312 | CVCL_5M23|Cancer_cell_line|Mesocricetus auratus | denotes | we |
T5 | 333-341 | CVCL_C410|Hybridoma|Mus musculus | denotes | activity |
T6 | 345-346 | CVCL_6479|Finite_cell_line|Mus musculus | denotes | a |
T7 | 387-388 | CVCL_6479|Finite_cell_line|Mus musculus | denotes | a |
T8 | 389-393 | CVCL_0047|Telomerase_immortalized_cell_line|Homo sapiens | denotes | time |
T9 | 438-439 | CVCL_6479|Finite_cell_line|Mus musculus | denotes | a |
T10 | 503-505 | CVCL_J923|Hybridoma|Mus musculus | denotes | 20 |
T11 | 562-563 | CVCL_6479|Finite_cell_line|Mus musculus | denotes | a |
T12 | 620-622 | CVCL_5M23|Cancer_cell_line|Mesocricetus auratus | denotes | we |
T13 | 761-762 | CVCL_6479|Finite_cell_line|Mus musculus | denotes | a |
T14 | 895-896 | CVCL_6479|Finite_cell_line|Mus musculus | denotes | a |
T15 | 1014-1017 | CVCL_6758|Undefined_cell_line_type|Cricetulus griseus | denotes | has |
T16 | 1014-1017 | CVCL_E689|Transformed_cell_line|Homo sapiens | denotes | has |
NCBITAXON
Id | Subject | Object | Predicate | Lexical cue | db_id |
---|---|---|---|---|---|
T1 | 347-369 | OrganismTaxon | denotes | Caenorhabditis elegans | 6239 |
T2 | 999-1005 | OrganismTaxon | denotes | planes | 106761 |