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GoldHamster

Id Subject Object Predicate Lexical cue
T2 347-369 D017173 denotes Caenorhabditis elegans
T3 347-369 6239 denotes Caenorhabditis elegans
T5 394-402 SO:0000001 denotes sequence
T6 506-510 PR:000022679 denotes fold
T7 506-510 PR:Q2FZJ6 denotes fold
T8 506-510 PR:A5I112 denotes fold
T9 506-510 PR:P24186 denotes fold
T10 523-528 PR:Q07342 denotes axial
T11 937-942 SO:0000343 denotes match

PubMed_ArguminSci

Id Subject Object Predicate Lexical cue
T1 92-275 DRI_Outcome denotes We demonstrate that a deep neural network can be trained to virtually refocus a two-dimensional fluorescence image onto user-defined three-dimensional (3D) surfaces within the sample.
T2 276-606 DRI_Approach denotes Using this method, termed Deep-Z, we imaged the neuronal activity of a Caenorhabditis elegans worm in 3D using a time sequence of fluorescence images acquired at a single focal plane, digitally increasing the depth-of-field by 20-fold without any axial scanning, additional hardware or a trade-off of imaging resolution and speed.
T3 607-789 DRI_Outcome denotes Furthermore, we demonstrate that this approach can correct for sample drift, tilt and other aberrations, all digitally performed after the acquisition of a single fluorescence image.
T4 790-1006 DRI_Background denotes This framework also cross-connects different imaging modalities to each other, enabling 3D refocusing of a single wide-field fluorescence image to match confocal microscopy images acquired at different sample planes.
T5 1007-1207 DRI_Outcome denotes Deep-Z has the potential to improve volumetric imaging speed while reducing challenges relating to sample drift, aberration and defocusing that are associated with standard 3D fluorescence microscopy.

Goldhamster2_Cellosaurus

Id Subject Object Predicate Lexical cue
T1 92-94 CVCL_5M23|Cancer_cell_line|Mesocricetus auratus denotes We
T2 112-113 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T3 170-171 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T4 310-312 CVCL_5M23|Cancer_cell_line|Mesocricetus auratus denotes we
T5 333-341 CVCL_C410|Hybridoma|Mus musculus denotes activity
T6 345-346 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T7 387-388 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T8 389-393 CVCL_0047|Telomerase_immortalized_cell_line|Homo sapiens denotes time
T9 438-439 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T10 503-505 CVCL_J923|Hybridoma|Mus musculus denotes 20
T11 562-563 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T12 620-622 CVCL_5M23|Cancer_cell_line|Mesocricetus auratus denotes we
T13 761-762 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T14 895-896 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T15 1014-1017 CVCL_6758|Undefined_cell_line_type|Cricetulus griseus denotes has
T16 1014-1017 CVCL_E689|Transformed_cell_line|Homo sapiens denotes has

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 347-369 OrganismTaxon denotes Caenorhabditis elegans 6239
T2 999-1005 OrganismTaxon denotes planes 106761