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GoldHamster

Id Subject Object Predicate Lexical cue
T1 8-22 D002296 denotes carcinosarcoma
T2 8-22 D002296 denotes carcinosarcoma
T3 30-52 UBERON:0009972 denotes ureteropelvic junction
T5 44-52 SO:0000699 denotes junction
T6 69-77 D014515 denotes ureteral
T7 69-77 D014515 denotes ureteral
T8 78-89 SO:1000035 denotes duplication
T9 125-139 D002296 denotes carcinosarcoma
T10 125-139 D002296 denotes carcinosarcoma
T11 147-166 UBERON:0011143 denotes upper urinary tract
T13 153-166 D014570 denotes urinary tract
T14 153-166 D014570 denotes urinary tract
T16 176-184 D014515 denotes Ureteral
T17 176-184 D014515 denotes Ureteral
T18 185-196 SO:1000035 denotes duplication
T19 223-236 UBERON:0001008 denotes urinary tract
T20 223-236 D014570 denotes urinary tract
T21 223-236 D014570 denotes urinary tract
T23 290-298 D014515 denotes ureteral
T24 290-298 D014515 denotes ureteral
T25 299-310 SO:1000035 denotes duplication
T26 315-325 D009369 denotes malignancy
T27 315-325 D009369 denotes malignancy
T28 329-336 32644 denotes unknown
T29 390-396 D009369 denotes tumors
T30 390-396 D009369 denotes tumors
T31 410-424 D002296 denotes carcinosarcoma
T32 410-424 D002296 denotes carcinosarcoma
T33 430-438 D014515 denotes ureteral
T34 430-438 D014515 denotes ureteral
T35 439-450 SO:1000035 denotes duplication
T36 515-529 D002296 denotes carcinosarcoma
T37 515-529 D002296 denotes carcinosarcoma
T38 537-559 UBERON:0009972 denotes ureteropelvic junction
T40 551-559 SO:0000699 denotes junction
T41 587-595 D014515 denotes ureteral
T42 587-595 D014515 denotes ureteral
T43 596-607 SO:1000035 denotes duplication
T44 686-695 D006417 denotes hematuria
T45 686-695 D006417 denotes hematuria
T46 758-780 D018269 denotes endometrioid carcinoma
T47 758-780 D018269 denotes endometrioid carcinoma
T50 909-917 D014515 denotes ureteral
T51 909-917 D014515 denotes ureteral
T52 918-929 SO:1000035 denotes duplication
T53 931-945 D006869 denotes hydronephrosis
T54 931-945 D006869 denotes hydronephrosis
T55 962-967 D009369 denotes tumor
T56 962-967 D009369 denotes tumor
T57 975-997 UBERON:0009972 denotes ureteropelvic junction
T59 989-997 SO:0000699 denotes junction
T60 1025-1037 UBERON:0004539 denotes right kidney
T62 1218-1223 Q23978 denotes myoid
T64 1224-1231 CVCL_E018 denotes spindle
T63 1224-1231 GO:0005819 denotes spindle
T65 1274-1284 D009369 denotes malignancy
T66 1274-1284 D009369 denotes malignancy
T67 1390-1395 D009369 denotes tumor
T68 1390-1395 D009369 denotes tumor
T69 1414-1422 D009369 denotes neoplasm
T70 1414-1422 D009369 denotes neoplasm
T71 1542-1550 P48674 denotes vimentin
T72 1542-1550 Q4R4X4 denotes vimentin
T73 1542-1550 Q5R1W8 denotes vimentin
T74 1542-1550 P02544 denotes vimentin
T75 1542-1550 PR:000017298 denotes vimentin
T78 1542-1550 P84198 denotes vimentin
T80 1542-1550 P02543 denotes vimentin
T81 1542-1550 Q92155 denotes vimentin
T82 1542-1550 P31000 denotes vimentin
T83 1542-1550 P09654 denotes vimentin
T84 1542-1550 P48616 denotes vimentin
T86 1542-1550 P48670 denotes vimentin
T87 1542-1550 Q9MZA9 denotes vimentin
T88 1542-1550 P20152 denotes vimentin
T89 1542-1550 P08670 denotes vimentin
T76 1542-1550 GO:0045099 denotes vimentin
T79 1542-1550 GO:0045098 denotes vimentin
T77 1542-1550 D014746 denotes vimentin
T85 1542-1550 CHEBI:9982 denotes vimentin
T91 1552-1558 P02541 denotes desmin
T92 1552-1558 P48675 denotes desmin
T93 1552-1558 P17661 denotes desmin
T94 1552-1558 Q5XFN2 denotes desmin
T95 1552-1558 O62654 denotes desmin
T96 1552-1558 P02542 denotes desmin
T97 1552-1558 P02540 denotes desmin
T100 1552-1558 PR:000006427 denotes desmin
T101 1552-1558 P23239 denotes desmin
T102 1552-1558 P31001 denotes desmin
T90 1552-1558 GO:0045098 denotes desmin
T99 1552-1558 GO:0045100 denotes desmin
T98 1552-1558 D003893 denotes desmin
T103 1562-1571 PR:000004974 denotes caldesmon
T106 1562-1571 P12957 denotes caldesmon
T107 1562-1571 Q05682 denotes caldesmon
T104 1562-1571 D002148 denotes caldesmon
T105 1562-1571 CHEBI:17686 denotes caldesmon
T108 1616-1619 CVCL_L849 denotes AE1
T112 1616-1619 CVCL_4500 denotes AE1
T109 1616-1619 PR:000002033 denotes AE1
T110 1616-1619 P32847 denotes AE1
T111 1616-1619 PR:P02730 denotes AE1
T113 1616-1619 PR:P23562 denotes AE1
T114 1616-1619 Q9NJQ2 denotes AE1
T115 1616-1619 P02730 denotes AE1
T116 1616-1619 P23562 denotes AE1
T117 1616-1619 P04919 denotes AE1
T118 1616-1619 PR:P04919 denotes AE1
T121 1620-1623 CVCL_L851 denotes AE3
T122 1620-1623 CVCL_1Y16 denotes AE3
T119 1620-1623 Q5RB85 denotes AE3
T120 1620-1623 PR:000015159 denotes AE3
T123 1620-1623 O18917 denotes AE3
T124 1620-1623 PR:P16283 denotes AE3
T125 1620-1623 B1MTL0 denotes AE3
T126 1620-1623 PR:P48751 denotes AE3
T127 1620-1623 PR:P23348 denotes AE3
T128 1620-1623 P48751 denotes AE3
T129 1620-1623 PR:O24412 denotes AE3
T130 1620-1623 P16283 denotes AE3
T131 1620-1623 P23348 denotes AE3
T133 1647-1667 C400901 denotes cytokeratin (CAM 5.2
T134 1647-1667 C400901 denotes cytokeratin (CAM 5.2
T212 1660-1663 D020786 denotes CAM
T217 1660-1663 C535342 denotes CAM
T231 1660-1665 Q682T9 denotes CAM 5
T232 1660-1665 PR:Q682T9 denotes CAM 5
T235 1670-1673 CVCL_L350 denotes EMA
T236 1670-1673 PR:000001890 denotes EMA
T237 1670-1673 O54917 denotes EMA
T238 1670-1673 PR:000006857 denotes EMA
T239 1670-1673 PR:Q9VEV4 denotes EMA
T240 1670-1673 P15941 denotes EMA
T241 1675-1685 P08641 denotes E-cadherin
T242 1675-1685 P30944 denotes E-cadherin
T243 1675-1685 Q6R8F2 denotes E-cadherin
T244 1675-1685 PR:Q24298 denotes E-cadherin
T245 1675-1685 F1PAA9 denotes E-cadherin
T246 1675-1685 P09803 denotes E-cadherin
T248 1675-1685 PR:000001447 denotes E-cadherin
T250 1675-1685 P12830 denotes E-cadherin
T251 1675-1685 Q5RAX1 denotes E-cadherin
T252 1675-1685 Q9R0T4 denotes E-cadherin
T247 1675-1685 D015820 denotes E-cadherin
T249 1675-1685 D015820 denotes E-cadherin
T253 1677-1685 GO:0008014 denotes cadherin
T264 1687-1692 P23825 denotes GATA3
T265 1687-1692 PR:000001941 denotes GATA3
T266 1687-1692 PR:Q8L4M6 denotes GATA3
T267 1687-1692 PR:P23825 denotes GATA3
T268 1687-1692 PR:P23771 denotes GATA3
T269 1687-1692 PR:Q91428 denotes GATA3
T270 1687-1692 PR:P23772 denotes GATA3
T272 1694-1705 O00526 denotes uroplakin 2
T273 1694-1705 Q95L04 denotes uroplakin 2
T274 1694-1705 P38575 denotes uroplakin 2
T275 1694-1705 Q08537 denotes uroplakin 2
T277 1694-1705 PR:000017114 denotes uroplakin 2
T276 1694-1705 D060170 denotes uroplakin 2
T278 1711-1714 PR:000017214 denotes p63
T279 1711-1714 Q07065 denotes p63
T280 1711-1714 PR:000016567 denotes p63
T281 1711-1714 Q8BMK4 denotes p63
T282 1711-1714 Q9P2Y5 denotes p63
T283 1711-1714 PR:Q9JJP6 denotes p63
T284 1711-1714 O88898 denotes p63
T285 1711-1714 PR:Q9FL16 denotes p63
T286 1711-1714 PR:Q9H3D4 denotes p63
T287 1711-1714 Q9JJP6 denotes p63
T288 1711-1714 PR:O88898 denotes p63
T289 1711-1714 P25420 denotes p63
T290 1711-1714 PR:000005511 denotes p63
T291 1711-1714 Q9H3D4 denotes p63
T292 1758-1763 D009369 denotes tumor
T293 1758-1763 D009369 denotes tumor
T294 1767-1781 D002296 denotes carcinosarcoma
T295 1767-1781 D002296 denotes carcinosarcoma
T296 1913-1923 D012008 denotes recurrence
T297 1913-1923 D012008 denotes recurrence
T298 1962-1976 D002296 denotes Carcinosarcoma
T299 1962-1976 D002296 denotes Carcinosarcoma
T300 1992-2000 D014515 denotes ureteral
T301 1992-2000 D014515 denotes ureteral
T302 2001-2012 SO:1000035 denotes duplication
T303 2039-2054 D002296 denotes carcinosarcomas
T304 2039-2054 D002296 denotes carcinosarcomas
T305 2062-2081 UBERON:0011143 denotes upper urinary tract
T307 2068-2081 D014570 denotes urinary tract
T308 2068-2081 D014570 denotes urinary tract
T310 2096-2101 PR:O23702 denotes at an
T311 2248-2256 D014515 denotes ureteral
T312 2248-2256 D014515 denotes ureteral
T313 2257-2268 SO:1000035 denotes duplication
T314 2273-2283 D009369 denotes malignancy
T315 2273-2283 D009369 denotes malignancy

PubMed_Structured_Abstracts

Id Subject Object Predicate Lexical cue
T1 117-608 BACKGROUND denotes Primary carcinosarcoma of the upper urinary tract is rare. Ureteral duplication is one of the most common urinary tract malformations. Additionally, the association between ureteral duplication and malignancy is unknown. To the best of our knowledge, no cases of malignant tumors diagnosed as carcinosarcoma with ureteral duplication have been reported. We herein report the case of a patient with carcinosarcoma of the ureteropelvic junction associated with incomplete ureteral duplication.
T2 627-850 UNASSIGNED denotes A 60-year-old Japanese woman presented with painless gross hematuria. She had a history of total hysterectomy and chemotherapy for endometrioid carcinoma 5 years before. She had no history of occupational chemical exposure.
T3 862-1285 UNASSIGNED denotes Radiographic imaging revealed right incomplete ureteral duplication, hydronephrosis, and a polypoid tumor in the ureteropelvic junction of the lower moiety of the right kidney. Urine cytology showed a small amount of degenerated atypical epithelial and nonepithelial cells. The transureteral biopsy specimen showed dysplastic urothelial cells and atypical myoid spindle cells. These findings were indefinite for malignancy.
T4 1301-1782 METHODS denotes The patient underwent right nephroureterectomy. Pathological examination of the resected tumor showed a biphasic neoplasm composed of carcinomatous and sarcomatous components. The sarcomatous component was immunohistochemically positive for vimentin, desmin, h-caldesmon, and α-SMA and negative for pancytokeratin (AE1/AE3), low molecular weight cytokeratin (CAM 5.2), EMA, E-cadherin, GATA3, uroplakin 2, and p63. Based on these findings, we diagnosed the tumor as carcinosarcoma.
T5 1793-1952 RESULTS denotes The postoperative course was uneventful. No additional therapy was administered. The patient has remained alive without recurrence for 21 months since surgery.
T6 1962-2284 CONCLUSIONS denotes Carcinosarcoma can arise from ureteral duplication. Although the majority of carcinosarcomas of the upper urinary tract are diagnosed at an advanced stage and have a poor prognosis, some can have a less aggressive course. Further studies are needed to determine the association between ureteral duplication and malignancy.

Goldhamster2_Cellosaurus

Id Subject Object Predicate Lexical cue
T1 91-92 CVCL_6479|Finite_cell_line|Mus musculus denotes A
T2 170-174 CVCL_M787|Cancer_cell_line|Homo sapiens denotes rare
T3 200-203 CVCL_Z424|Spontaneously_immortalized_cell_line|Ostrinia nubilalis denotes one
T4 471-473 CVCL_5M23|Cancer_cell_line|Mesocricetus auratus denotes We
T5 500-501 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T6 627-628 CVCL_6479|Finite_cell_line|Mus musculus denotes A
T7 629-631 CVCL_C917|Induced_pluripotent_stem_cell|Homo sapiens denotes 60
T8 705-706 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T9 951-952 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T10 1061-1062 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T11 1224-1231 CVCL_E018|Induced_pluripotent_stem_cell|Homo sapiens denotes spindle
T12 1403-1404 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T13 1616-1619 CVCL_4500|Hybridoma|Mus musculus denotes AE1
T14 1616-1619 CVCL_L849|Cancer_cell_line|Homo sapiens denotes AE1
T15 1620-1623 CVCL_1Y16|Hybridoma|Mus musculus denotes AE3
T16 1660-1663 CVCL_ZV35|Spontaneously_immortalized_cell_line|Cromileptes altivelis denotes CAM
T17 1670-1673 CVCL_L350|Cancer_cell_line|Canis lupus familiaris denotes EMA
T18 1741-1743 CVCL_5M23|Cancer_cell_line|Mesocricetus auratus denotes we
T19 1886-1889 CVCL_6758|Undefined_cell_line_type|Cricetulus griseus denotes has
T20 1886-1889 CVCL_E689|Transformed_cell_line|Homo sapiens denotes has
T21 2099-2101 CVCL_8754|Cancer_cell_line|Homo sapiens denotes an
T22 2099-2101 CVCL_H241|Cancer_cell_line|Homo sapiens denotes an
T23 2126-2127 CVCL_6479|Finite_cell_line|Mus musculus denotes a
T24 2158-2159 CVCL_6479|Finite_cell_line|Mus musculus denotes a