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mondo_disease

Id	Subject	Object	Predicate	Lexical cue	mondo_id
T1	64-79	Disease	denotes	Prostate Cancer	http://purl.obolibrary.org/obo/MONDO_0008315
T2	218-233	Disease	denotes	prostate cancer	http://purl.obolibrary.org/obo/MONDO_0008315
T3	235-238	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315
T4	388-391	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315
T5	607-610	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315
T6	617-644	Disease	denotes	benign prostate hyperplasia	http://purl.obolibrary.org/obo/MONDO_0010811
T7	646-649	Disease	denotes	BPH	http://purl.obolibrary.org/obo/MONDO_0010811
T8	897-900	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315
T9	923-926	Disease	denotes	BPH	http://purl.obolibrary.org/obo/MONDO_0010811
T10	1018-1021	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315
T11	1148-1151	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315
T12	1159-1162	Disease	denotes	BPH	http://purl.obolibrary.org/obo/MONDO_0010811
T13	1438-1441	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315
T14	1702-1705	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315

Glycan-GlyCosmos

Id	Subject	Object	Predicate	Lexical cue	image
T1	830-836	Glycan	denotes	GalNAc	https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL

GlyCosmos15-UBERON

Id	Subject	Object	Predicate	Lexical cue	uberon_id
T1	64-72	Body_part	denotes	Prostate	http://purl.obolibrary.org/obo/UBERON_0002367
T2	115-120	Body_part	denotes	Serum	http://purl.obolibrary.org/obo/UBERON_0001977
T3	121-129	Body_part	denotes	prostate	http://purl.obolibrary.org/obo/UBERON_0002367
T4	218-226	Body_part	denotes	prostate	http://purl.obolibrary.org/obo/UBERON_0002367
T5	624-632	Body_part	denotes	prostate	http://purl.obolibrary.org/obo/UBERON_0002367

GlyCosmos15-HP

Id	Subject	Object	Predicate	Lexical cue	hp_id
T1	64-79	Phenotype	denotes	Prostate Cancer	HP:0012125
T2	218-233	Phenotype	denotes	prostate cancer	HP:0012125
T3	235-238	Phenotype	denotes	PCa	HP:0012125
T4	388-391	Phenotype	denotes	PCa	HP:0012125
T5	607-610	Phenotype	denotes	PCa	HP:0012125
T6	617-644	Phenotype	denotes	benign prostate hyperplasia	HP:0008711
T7	646-649	Phenotype	denotes	BPH	HP:0008711
T8	897-900	Phenotype	denotes	PCa	HP:0012125
T9	923-926	Phenotype	denotes	BPH	HP:0008711
T10	1018-1021	Phenotype	denotes	PCa	HP:0012125
T11	1148-1151	Phenotype	denotes	PCa	HP:0012125
T12	1159-1162	Phenotype	denotes	BPH	HP:0008711
T13	1438-1441	Phenotype	denotes	PCa	HP:0012125
T14	1702-1705	Phenotype	denotes	PCa	HP:0012125

GlyCosmos15-MONDO

Id	Subject	Object	Predicate	Lexical cue	mondo_id
T1	64-79	Disease	denotes	Prostate Cancer	http://purl.obolibrary.org/obo/MONDO_0008315
T2	218-233	Disease	denotes	prostate cancer	http://purl.obolibrary.org/obo/MONDO_0008315
T3	235-238	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315
T4	388-391	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315
T5	607-610	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315
T6	617-644	Disease	denotes	benign prostate hyperplasia	http://purl.obolibrary.org/obo/MONDO_0010811
T7	646-649	Disease	denotes	BPH	http://purl.obolibrary.org/obo/MONDO_0010811
T8	897-900	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315
T9	923-926	Disease	denotes	BPH	http://purl.obolibrary.org/obo/MONDO_0010811
T10	1018-1021	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315
T11	1148-1151	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315
T12	1159-1162	Disease	denotes	BPH	http://purl.obolibrary.org/obo/MONDO_0010811
T13	1438-1441	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315
T14	1702-1705	Disease	denotes	PCa	http://purl.obolibrary.org/obo/MONDO_0008315

GlyCosmos15-MAT

Id	Subject	Object	Predicate	Lexical cue	mat_id
T1	64-72	Body_part	denotes	Prostate	http://purl.obolibrary.org/obo/MAT_0000078
T2	121-129	Body_part	denotes	prostate	http://purl.obolibrary.org/obo/MAT_0000078
T3	218-226	Body_part	denotes	prostate	http://purl.obolibrary.org/obo/MAT_0000078
T4	624-632	Body_part	denotes	prostate	http://purl.obolibrary.org/obo/MAT_0000078

GlyCosmos15-Sentences

Id	Subject	Object	Predicate	Lexical cue
T1	0-114	Sentence	denotes	Identification of Multisialylated LacdiNAc Structures as Highly Prostate Cancer Specific Glycan Signatures on PSA.
T2	115-299	Sentence	denotes	Serum prostate-specific antigen (PSA) test is the current gold standard for screening and diagnosis of prostate cancer (PCa), while overdiagnosis and overtreatment are social problems.
T3	300-563	Sentence	denotes	In order to improve the specificity and exclude a false positive diagnosis in PSA test, PCa-specific glycosylation subtypes of PSA were explored using in-depth quantitative profiling of PSA glycoforms based on mass spectrometric oxonium ion monitoring technology.
T4	564-776	Sentence	denotes	As a result of analysis using sera from 15 PCa or 15 benign prostate hyperplasia (BPH) patients whose PSA levels were in the "gray zone" (4.0-10.0 ng/mL), 52 glycan structures on PSA were quantitatively observed.
T5	777-933	Sentence	denotes	We found that abundance of multisialylated LacdiNAc (GalNAcβ1-4GlcNAc) structures were significantly upregulated in the PCa group compared to the BPH group.
T6	934-1061	Sentence	denotes	A couple of those glycoforms were then extracted and subjected to establish a novel PCa-specific diagnosis model (PSA G-index).
T7	1062-1299	Sentence	denotes	When the diagnostic power was assessed using an independent validation sample set (15 PCa and 15 BPH patients in the PSA gray zone), an AUC of PSA G-index was 1.00, while that of total PSA or PSA f/T ratio was 0.50 or 0.60, respectively.
T8	1300-1381	Sentence	denotes	Moreover, both PSA glycoforms showed significant correlation with Gleason scores.
T9	1382-1522	Sentence	denotes	Lectin histochemical staining analysis also showed that PCa cells overexpressed glycoproteins containing LacdiNAc and sialic acids moieties.
T10	1523-1706	Sentence	denotes	Thus, PSA G-index could serve as not only an effective secondary screening method to exclude false positive diagnosis in PSA screening, but also a potential grading biomarker for PCa.

GlyCosmos15-Glycan

Id	Subject	Object	Predicate	Lexical cue	image
T1	830-836	Glycan	denotes	GalNAc	https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL

GlyCosmos15-Lectin-Jamboree

Id	Subject	Object	Predicate	Lexical cue	glycosmos_id
T1	110-113	Lectin	denotes	PSA	GL_000021
T2	148-151	Lectin	denotes	PSA	GL_000021
T3	378-381	Lectin	denotes	PSA	GL_000021
T4	427-430	Lectin	denotes	PSA	GL_000021
T5	486-489	Lectin	denotes	PSA	GL_000021
T6	666-669	Lectin	denotes	PSA	GL_000021
T7	743-746	Lectin	denotes	PSA	GL_000021
T8	1048-1051	Lectin	denotes	PSA	GL_000021
T9	1179-1182	Lectin	denotes	PSA	GL_000021
T10	1205-1208	Lectin	denotes	PSA	GL_000021
T11	1247-1250	Lectin	denotes	PSA	GL_000021
T12	1254-1257	Lectin	denotes	PSA	GL_000021
T13	1315-1318	Lectin	denotes	PSA	GL_000021
T14	1529-1532	Lectin	denotes	PSA	GL_000021
T15	1644-1647	Lectin	denotes	PSA	GL_000021

Anatomy-UBERON

Id	Subject	Object	Predicate	Lexical cue	uberon_id
T1	64-72	Body_part	denotes	Prostate	http://purl.obolibrary.org/obo/UBERON_0002367
T2	115-120	Body_part	denotes	Serum	http://purl.obolibrary.org/obo/UBERON_0001977
T3	121-129	Body_part	denotes	prostate	http://purl.obolibrary.org/obo/UBERON_0002367
T4	218-226	Body_part	denotes	prostate	http://purl.obolibrary.org/obo/UBERON_0002367
T5	624-632	Body_part	denotes	prostate	http://purl.obolibrary.org/obo/UBERON_0002367

Anatomy-MAT

Id	Subject	Object	Predicate	Lexical cue	mat_id
T1	64-72	Body_part	denotes	Prostate	http://purl.obolibrary.org/obo/MAT_0000078
T2	121-129	Body_part	denotes	prostate	http://purl.obolibrary.org/obo/MAT_0000078
T3	218-226	Body_part	denotes	prostate	http://purl.obolibrary.org/obo/MAT_0000078
T4	624-632	Body_part	denotes	prostate	http://purl.obolibrary.org/obo/MAT_0000078

HP-phenotype

Id	Subject	Object	Predicate	Lexical cue	hp_id
T1	64-79	Phenotype	denotes	Prostate Cancer	HP:0012125
T2	218-233	Phenotype	denotes	prostate cancer	HP:0012125
T3	235-238	Phenotype	denotes	PCa	HP:0012125
T4	388-391	Phenotype	denotes	PCa	HP:0012125
T5	607-610	Phenotype	denotes	PCa	HP:0012125
T6	617-644	Phenotype	denotes	benign prostate hyperplasia	HP:0008711
T7	646-649	Phenotype	denotes	BPH	HP:0008711
T8	897-900	Phenotype	denotes	PCa	HP:0012125
T9	923-926	Phenotype	denotes	BPH	HP:0008711
T10	1018-1021	Phenotype	denotes	PCa	HP:0012125
T11	1148-1151	Phenotype	denotes	PCa	HP:0012125
T12	1159-1162	Phenotype	denotes	BPH	HP:0008711
T13	1438-1441	Phenotype	denotes	PCa	HP:0012125
T14	1702-1705	Phenotype	denotes	PCa	HP:0012125