PubMed:29100789
Annnotations
OryzaGP_2021
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 761-783 | hunflair:NA:Gene | denotes | CDPK activation domain |
| M_1 | 182-187 | hunflair:NA:Gene | denotes | CDPKs |
| M_2 | 1602-1607 | hunflair:NA:Gene | denotes | CDPKs |
| M_3 | 51-57 | hunflair:NA:Gene | denotes | kinase |
| M_4 | 1516-1522 | hunflair:NA:Gene | denotes | kinase |
| M_5 | 340-344 | hunflair:NA:Gene | denotes | CDPK |
| M_6 | 541-545 | hunflair:NA:Gene | denotes | CDPK |
| M_7 | 761-765 | hunflair:NA:Gene | denotes | CDPK |
| M_8 | 903-908 | hunflair:NA:Species | denotes | onion |
| M_9 | 58-65 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_10 | 585-592 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_11 | 697-704 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_12 | 962-969 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_13 | 1145-1152 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_14 | 1250-1257 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_15 | 1440-1447 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_16 | 147-180 | hunflair:NA:Gene | denotes | calcium-dependent protein kinases |
| M_17 | 4-8 | hunflair:NA:Species | denotes | rice |
| M_18 | 558-562 | hunflair:NA:Species | denotes | rice |
| M_19 | 843-847 | hunflair:NA:Species | denotes | rice |
| M_20 | 25-32 | hunflair:NA:Chemical | denotes | calcium |
| M_21 | 147-154 | hunflair:NA:Chemical | denotes | calcium |
| M_22 | 220-227 | hunflair:NA:Chemical | denotes | calcium |
| M_23 | 1318-1325 | hunflair:NA:Chemical | denotes | calcium |
| M_24 | 679-681 | hunflair:NA:Disease | denotes | AS |
| M_25 | 828-830 | hunflair:NA:Disease | denotes | AS |
| M_26 | 956-958 | hunflair:NA:Disease | denotes | AS |
21k_plant_trait_mention
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 568-574 | funRiceGene:361 | denotes | stress |
| M_1 | 1516-1522 | funRiceGene:512 | denotes | kinase |
| M_2 | 563-567 | WTO:0000129, funRiceGene:509 | denotes | cold |
| M_3 | 563-574 | funRiceGene:346, xzyao:1433 | denotes | cold stress |
| M_4 | 1318-1325 | funRiceGene:178 | denotes | calcium |
| M_5 | 1516-1522 | funRiceGene:139 | denotes | kinase |
| M_6 | 340-344 | hunflair:NA:Gene | denotes | CDPK |
| M_7 | 541-545 | hunflair:NA:Gene | denotes | CDPK |
| M_8 | 761-765 | hunflair:NA:Gene | denotes | CDPK |
| M_9 | 182-187 | hunflair:NA:Gene | denotes | CDPKs |
| M_10 | 1602-1607 | hunflair:NA:Gene | denotes | CDPKs |
| M_11 | 25-32 | hunflair:NA:Chemical | denotes | calcium |
| M_12 | 147-154 | hunflair:NA:Chemical | denotes | calcium |
| M_13 | 220-227 | hunflair:NA:Chemical | denotes | calcium |
| M_14 | 1318-1325 | hunflair:NA:Chemical | denotes | calcium |
| M_15 | 761-783 | hunflair:NA:Gene | denotes | CDPK activation domain |
| M_16 | 4-8 | hunflair:NA:Species | denotes | rice |
| M_17 | 558-562 | hunflair:NA:Species | denotes | rice |
| M_18 | 843-847 | hunflair:NA:Species | denotes | rice |
| M_19 | 51-57 | hunflair:NA:Gene | denotes | kinase |
| M_20 | 1516-1522 | hunflair:NA:Gene | denotes | kinase |
| M_21 | 903-908 | hunflair:NA:Species | denotes | onion |
| M_22 | 679-681 | hunflair:NA:Disease | denotes | AS |
| M_23 | 828-830 | hunflair:NA:Disease | denotes | AS |
| M_24 | 956-958 | hunflair:NA:Disease | denotes | AS |
| M_25 | 58-65 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_26 | 585-592 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_27 | 697-704 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_28 | 962-969 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_29 | 1145-1152 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_30 | 1250-1257 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_31 | 1440-1447 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_32 | 147-180 | hunflair:NA:Gene | denotes | calcium-dependent protein kinases |
| M_33 | 903-908 | pubtator:4679:Species | denotes | onion |
| M_34 | 1448-1449 | pubtator:MESH:D009584:Chemical | denotes | N |
| M_35 | 1534-1538 | pubtator:MESH:C102643:Chemical | denotes | S558 |
| M_36 | 4-8 | pubtator:4530:Species | denotes | rice |
| M_37 | 558-562 | pubtator:4530:Species | denotes | rice |
| M_38 | 843-847 | pubtator:4530:Species | denotes | rice |
| M_39 | 25-32 | pubtator:MESH:D002118:Chemical | denotes | calcium |
| M_40 | 147-154 | pubtator:MESH:D002118:Chemical | denotes | calcium |
| M_41 | 220-227 | pubtator:MESH:D002118:Chemical | denotes | calcium |
| M_42 | 1318-1325 | pubtator:MESH:D002118:Chemical | denotes | calcium |
| M_43 | 1546-1547 | pubtator:MESH:D002244:Chemical | denotes | C |
OryzaGP_2021_v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 58-65 | http://identifiers.org/oryzabase.gene/8068 | denotes | OsCPK17 |
| T2 | 585-592 | http://identifiers.org/oryzabase.gene/8068 | denotes | OsCPK17 |
| T3 | 697-704 | http://identifiers.org/oryzabase.gene/8068 | denotes | OsCPK17 |
| T4 | 962-969 | http://identifiers.org/oryzabase.gene/8068 | denotes | OsCPK17 |
| T5 | 1145-1152 | http://identifiers.org/oryzabase.gene/8068 | denotes | OsCPK17 |
| T6 | 1250-1257 | http://identifiers.org/oryzabase.gene/8068 | denotes | OsCPK17 |
| T7 | 1440-1447 | http://identifiers.org/oryzabase.gene/8068 | denotes | OsCPK17 |
| T38979 | 58-65 | http://identifiers.org/rapdb.locus/Os07g0161600 | denotes | OsCPK17 |
| T56909 | 585-592 | http://identifiers.org/rapdb.locus/Os07g0161600 | denotes | OsCPK17 |
| T81966 | 697-704 | http://identifiers.org/rapdb.locus/Os07g0161600 | denotes | OsCPK17 |
| T83668 | 962-969 | http://identifiers.org/rapdb.locus/Os07g0161600 | denotes | OsCPK17 |
| T13281 | 1145-1152 | http://identifiers.org/rapdb.locus/Os07g0161600 | denotes | OsCPK17 |
| T94841 | 1250-1257 | http://identifiers.org/rapdb.locus/Os07g0161600 | denotes | OsCPK17 |
| T94729 | 1440-1447 | http://identifiers.org/rapdb.locus/Os07g0161600 | denotes | OsCPK17 |
OryzaGP_2022
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 43-57 | http://identifiers.org/oryzabase.gene/21903 | denotes | protein kinase |
| T2 | 43-57 | http://identifiers.org/oryzabase.gene/21900 | denotes | protein kinase |
| T3 | 43-57 | http://identifiers.org/oryzabase.gene/20466 | denotes | protein kinase |
OryzaGP_2021_FLAIR
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| M_0 | 761-783 | hunflair:NA:Gene | denotes | CDPK activation domain |
| M_1 | 182-187 | hunflair:NA:Gene | denotes | CDPKs |
| M_2 | 1602-1607 | hunflair:NA:Gene | denotes | CDPKs |
| M_3 | 51-57 | hunflair:NA:Gene | denotes | kinase |
| M_4 | 1516-1522 | hunflair:NA:Gene | denotes | kinase |
| M_5 | 340-344 | hunflair:NA:Gene | denotes | CDPK |
| M_6 | 541-545 | hunflair:NA:Gene | denotes | CDPK |
| M_7 | 761-765 | hunflair:NA:Gene | denotes | CDPK |
| M_8 | 903-908 | hunflair:NA:Species | denotes | onion |
| M_9 | 58-65 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_10 | 585-592 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_11 | 697-704 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_12 | 962-969 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_13 | 1145-1152 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_14 | 1250-1257 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_15 | 1440-1447 | hunflair:NA:Gene | denotes | OsCPK17 |
| M_16 | 147-180 | hunflair:NA:Gene | denotes | calcium-dependent protein kinases |
| M_17 | 4-8 | hunflair:NA:Species | denotes | rice |
| M_18 | 558-562 | hunflair:NA:Species | denotes | rice |
| M_19 | 843-847 | hunflair:NA:Species | denotes | rice |
| M_20 | 25-32 | hunflair:NA:Chemical | denotes | calcium |
| M_21 | 147-154 | hunflair:NA:Chemical | denotes | calcium |
| M_22 | 220-227 | hunflair:NA:Chemical | denotes | calcium |
| M_23 | 1318-1325 | hunflair:NA:Chemical | denotes | calcium |
| M_24 | 679-681 | hunflair:NA:Disease | denotes | AS |
| M_25 | 828-830 | hunflair:NA:Disease | denotes | AS |
| M_26 | 956-958 | hunflair:NA:Disease | denotes | AS |
Oryza_sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-140 | Sentence | denotes | The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications. |
| T2 | 141-309 | Sentence | denotes | Plant calcium-dependent protein kinases (CDPKs) are key proteins implicated in calcium-mediated signaling pathways of a wide range of biological events in the organism. |
| T3 | 310-490 | Sentence | denotes | The action of each particular CDPK is strictly regulated by many mechanisms in order to ensure an accurate signal translation and the activation of the adequate response processes. |
| T4 | 491-634 | Sentence | denotes | In this work, we investigated the regulation of a CDPK involved in rice cold stress response, OsCPK17, to better understand its mode of action. |
| T5 | 635-784 | Sentence | denotes | We identified two new alternative splicing (AS) mRNA forms of OsCPK17 encoding truncated versions of the protein, missing the CDPK activation domain. |
| T6 | 785-925 | Sentence | denotes | We analyzed the expression patterns of all AS variants in rice tissues and examined their subcellular localization in onion epidermal cells. |
| T7 | 926-1099 | Sentence | denotes | The results indicate that the AS of OsCPK17 putatively originates truncated forms of the protein with distinct functions, and different subcellular and tissue distributions. |
| T8 | 1100-1221 | Sentence | denotes | Additionally, we addressed the regulation of OsCPK17 by post-translational modifications in several in vitro experiments. |
| T9 | 1222-1382 | Sentence | denotes | Our analysis indicated that OsCPK17 activity depends on its structural rearrangement induced by calcium binding, and that the protein can be autophosphorylated. |
| T10 | 1383-1466 | Sentence | denotes | The identified phosphorylation sites mostly populate the OsCPK17 N-terminal domain. |
| T11 | 1467-1564 | Sentence | denotes | Exceptions are phosphosites T107 and S136 in the kinase domain and S558 in the C-terminal domain. |
| T12 | 1565-1678 | Sentence | denotes | These phosphosites seem conserved in CDPKs and may reflect a common regulatory mechanism for this protein family. |
Oryza_sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-140 | Sentence | denotes | The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications. |
| T2 | 141-309 | Sentence | denotes | Plant calcium-dependent protein kinases (CDPKs) are key proteins implicated in calcium-mediated signaling pathways of a wide range of biological events in the organism. |
| T3 | 310-490 | Sentence | denotes | The action of each particular CDPK is strictly regulated by many mechanisms in order to ensure an accurate signal translation and the activation of the adequate response processes. |
| T4 | 491-634 | Sentence | denotes | In this work, we investigated the regulation of a CDPK involved in rice cold stress response, OsCPK17, to better understand its mode of action. |
| T5 | 635-784 | Sentence | denotes | We identified two new alternative splicing (AS) mRNA forms of OsCPK17 encoding truncated versions of the protein, missing the CDPK activation domain. |
| T6 | 785-925 | Sentence | denotes | We analyzed the expression patterns of all AS variants in rice tissues and examined their subcellular localization in onion epidermal cells. |
| T7 | 926-1099 | Sentence | denotes | The results indicate that the AS of OsCPK17 putatively originates truncated forms of the protein with distinct functions, and different subcellular and tissue distributions. |
| T8 | 1100-1221 | Sentence | denotes | Additionally, we addressed the regulation of OsCPK17 by post-translational modifications in several in vitro experiments. |
| T9 | 1222-1382 | Sentence | denotes | Our analysis indicated that OsCPK17 activity depends on its structural rearrangement induced by calcium binding, and that the protein can be autophosphorylated. |
| T10 | 1383-1466 | Sentence | denotes | The identified phosphorylation sites mostly populate the OsCPK17 N-terminal domain. |
| T11 | 1467-1564 | Sentence | denotes | Exceptions are phosphosites T107 and S136 in the kinase domain and S558 in the C-terminal domain. |
| T12 | 1565-1678 | Sentence | denotes | These phosphosites seem conserved in CDPKs and may reflect a common regulatory mechanism for this protein family. |
Oryza_sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-140 | Sentence | denotes | The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications. |
| T2 | 141-309 | Sentence | denotes | Plant calcium-dependent protein kinases (CDPKs) are key proteins implicated in calcium-mediated signaling pathways of a wide range of biological events in the organism. |
| T3 | 310-490 | Sentence | denotes | The action of each particular CDPK is strictly regulated by many mechanisms in order to ensure an accurate signal translation and the activation of the adequate response processes. |
| T4 | 491-634 | Sentence | denotes | In this work, we investigated the regulation of a CDPK involved in rice cold stress response, OsCPK17, to better understand its mode of action. |
| T5 | 635-784 | Sentence | denotes | We identified two new alternative splicing (AS) mRNA forms of OsCPK17 encoding truncated versions of the protein, missing the CDPK activation domain. |
| T6 | 785-925 | Sentence | denotes | We analyzed the expression patterns of all AS variants in rice tissues and examined their subcellular localization in onion epidermal cells. |
| T7 | 926-1099 | Sentence | denotes | The results indicate that the AS of OsCPK17 putatively originates truncated forms of the protein with distinct functions, and different subcellular and tissue distributions. |
| T8 | 1100-1221 | Sentence | denotes | Additionally, we addressed the regulation of OsCPK17 by post-translational modifications in several in vitro experiments. |
| T9 | 1222-1382 | Sentence | denotes | Our analysis indicated that OsCPK17 activity depends on its structural rearrangement induced by calcium binding, and that the protein can be autophosphorylated. |
| T10 | 1383-1466 | Sentence | denotes | The identified phosphorylation sites mostly populate the OsCPK17 N-terminal domain. |
| T11 | 1467-1564 | Sentence | denotes | Exceptions are phosphosites T107 and S136 in the kinase domain and S558 in the C-terminal domain. |
| T12 | 1565-1678 | Sentence | denotes | These phosphosites seem conserved in CDPKs and may reflect a common regulatory mechanism for this protein family. |