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OryzaGP_2021

Id Subject Object Predicate Lexical cue
M_0 761-783 hunflair:NA:Gene denotes CDPK activation domain
M_1 182-187 hunflair:NA:Gene denotes CDPKs
M_2 1602-1607 hunflair:NA:Gene denotes CDPKs
M_3 51-57 hunflair:NA:Gene denotes kinase
M_4 1516-1522 hunflair:NA:Gene denotes kinase
M_5 340-344 hunflair:NA:Gene denotes CDPK
M_6 541-545 hunflair:NA:Gene denotes CDPK
M_7 761-765 hunflair:NA:Gene denotes CDPK
M_8 903-908 hunflair:NA:Species denotes onion
M_9 58-65 hunflair:NA:Gene denotes OsCPK17
M_10 585-592 hunflair:NA:Gene denotes OsCPK17
M_11 697-704 hunflair:NA:Gene denotes OsCPK17
M_12 962-969 hunflair:NA:Gene denotes OsCPK17
M_13 1145-1152 hunflair:NA:Gene denotes OsCPK17
M_14 1250-1257 hunflair:NA:Gene denotes OsCPK17
M_15 1440-1447 hunflair:NA:Gene denotes OsCPK17
M_16 147-180 hunflair:NA:Gene denotes calcium-dependent protein kinases
M_17 4-8 hunflair:NA:Species denotes rice
M_18 558-562 hunflair:NA:Species denotes rice
M_19 843-847 hunflair:NA:Species denotes rice
M_20 25-32 hunflair:NA:Chemical denotes calcium
M_21 147-154 hunflair:NA:Chemical denotes calcium
M_22 220-227 hunflair:NA:Chemical denotes calcium
M_23 1318-1325 hunflair:NA:Chemical denotes calcium
M_24 679-681 hunflair:NA:Disease denotes AS
M_25 828-830 hunflair:NA:Disease denotes AS
M_26 956-958 hunflair:NA:Disease denotes AS

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 568-574 funRiceGene:361 denotes stress
M_1 1516-1522 funRiceGene:512 denotes kinase
M_2 563-567 WTO:0000129, funRiceGene:509 denotes cold
M_3 563-574 funRiceGene:346, xzyao:1433 denotes cold stress
M_4 1318-1325 funRiceGene:178 denotes calcium
M_5 1516-1522 funRiceGene:139 denotes kinase
M_6 340-344 hunflair:NA:Gene denotes CDPK
M_7 541-545 hunflair:NA:Gene denotes CDPK
M_8 761-765 hunflair:NA:Gene denotes CDPK
M_9 182-187 hunflair:NA:Gene denotes CDPKs
M_10 1602-1607 hunflair:NA:Gene denotes CDPKs
M_11 25-32 hunflair:NA:Chemical denotes calcium
M_12 147-154 hunflair:NA:Chemical denotes calcium
M_13 220-227 hunflair:NA:Chemical denotes calcium
M_14 1318-1325 hunflair:NA:Chemical denotes calcium
M_15 761-783 hunflair:NA:Gene denotes CDPK activation domain
M_16 4-8 hunflair:NA:Species denotes rice
M_17 558-562 hunflair:NA:Species denotes rice
M_18 843-847 hunflair:NA:Species denotes rice
M_19 51-57 hunflair:NA:Gene denotes kinase
M_20 1516-1522 hunflair:NA:Gene denotes kinase
M_21 903-908 hunflair:NA:Species denotes onion
M_22 679-681 hunflair:NA:Disease denotes AS
M_23 828-830 hunflair:NA:Disease denotes AS
M_24 956-958 hunflair:NA:Disease denotes AS
M_25 58-65 hunflair:NA:Gene denotes OsCPK17
M_26 585-592 hunflair:NA:Gene denotes OsCPK17
M_27 697-704 hunflair:NA:Gene denotes OsCPK17
M_28 962-969 hunflair:NA:Gene denotes OsCPK17
M_29 1145-1152 hunflair:NA:Gene denotes OsCPK17
M_30 1250-1257 hunflair:NA:Gene denotes OsCPK17
M_31 1440-1447 hunflair:NA:Gene denotes OsCPK17
M_32 147-180 hunflair:NA:Gene denotes calcium-dependent protein kinases
M_33 903-908 pubtator:4679:Species denotes onion
M_34 1448-1449 pubtator:MESH:D009584:Chemical denotes N
M_35 1534-1538 pubtator:MESH:C102643:Chemical denotes S558
M_36 4-8 pubtator:4530:Species denotes rice
M_37 558-562 pubtator:4530:Species denotes rice
M_38 843-847 pubtator:4530:Species denotes rice
M_39 25-32 pubtator:MESH:D002118:Chemical denotes calcium
M_40 147-154 pubtator:MESH:D002118:Chemical denotes calcium
M_41 220-227 pubtator:MESH:D002118:Chemical denotes calcium
M_42 1318-1325 pubtator:MESH:D002118:Chemical denotes calcium
M_43 1546-1547 pubtator:MESH:D002244:Chemical denotes C

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 58-65 http://identifiers.org/oryzabase.gene/8068 denotes OsCPK17
T2 585-592 http://identifiers.org/oryzabase.gene/8068 denotes OsCPK17
T3 697-704 http://identifiers.org/oryzabase.gene/8068 denotes OsCPK17
T4 962-969 http://identifiers.org/oryzabase.gene/8068 denotes OsCPK17
T5 1145-1152 http://identifiers.org/oryzabase.gene/8068 denotes OsCPK17
T6 1250-1257 http://identifiers.org/oryzabase.gene/8068 denotes OsCPK17
T7 1440-1447 http://identifiers.org/oryzabase.gene/8068 denotes OsCPK17
T38979 58-65 http://identifiers.org/rapdb.locus/Os07g0161600 denotes OsCPK17
T56909 585-592 http://identifiers.org/rapdb.locus/Os07g0161600 denotes OsCPK17
T81966 697-704 http://identifiers.org/rapdb.locus/Os07g0161600 denotes OsCPK17
T83668 962-969 http://identifiers.org/rapdb.locus/Os07g0161600 denotes OsCPK17
T13281 1145-1152 http://identifiers.org/rapdb.locus/Os07g0161600 denotes OsCPK17
T94841 1250-1257 http://identifiers.org/rapdb.locus/Os07g0161600 denotes OsCPK17
T94729 1440-1447 http://identifiers.org/rapdb.locus/Os07g0161600 denotes OsCPK17

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 43-57 http://identifiers.org/oryzabase.gene/21903 denotes protein kinase
T2 43-57 http://identifiers.org/oryzabase.gene/21900 denotes protein kinase
T3 43-57 http://identifiers.org/oryzabase.gene/20466 denotes protein kinase

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 761-783 hunflair:NA:Gene denotes CDPK activation domain
M_1 182-187 hunflair:NA:Gene denotes CDPKs
M_2 1602-1607 hunflair:NA:Gene denotes CDPKs
M_3 51-57 hunflair:NA:Gene denotes kinase
M_4 1516-1522 hunflair:NA:Gene denotes kinase
M_5 340-344 hunflair:NA:Gene denotes CDPK
M_6 541-545 hunflair:NA:Gene denotes CDPK
M_7 761-765 hunflair:NA:Gene denotes CDPK
M_8 903-908 hunflair:NA:Species denotes onion
M_9 58-65 hunflair:NA:Gene denotes OsCPK17
M_10 585-592 hunflair:NA:Gene denotes OsCPK17
M_11 697-704 hunflair:NA:Gene denotes OsCPK17
M_12 962-969 hunflair:NA:Gene denotes OsCPK17
M_13 1145-1152 hunflair:NA:Gene denotes OsCPK17
M_14 1250-1257 hunflair:NA:Gene denotes OsCPK17
M_15 1440-1447 hunflair:NA:Gene denotes OsCPK17
M_16 147-180 hunflair:NA:Gene denotes calcium-dependent protein kinases
M_17 4-8 hunflair:NA:Species denotes rice
M_18 558-562 hunflair:NA:Species denotes rice
M_19 843-847 hunflair:NA:Species denotes rice
M_20 25-32 hunflair:NA:Chemical denotes calcium
M_21 147-154 hunflair:NA:Chemical denotes calcium
M_22 220-227 hunflair:NA:Chemical denotes calcium
M_23 1318-1325 hunflair:NA:Chemical denotes calcium
M_24 679-681 hunflair:NA:Disease denotes AS
M_25 828-830 hunflair:NA:Disease denotes AS
M_26 956-958 hunflair:NA:Disease denotes AS

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-140 Sentence denotes The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications.
T2 141-309 Sentence denotes Plant calcium-dependent protein kinases (CDPKs) are key proteins implicated in calcium-mediated signaling pathways of a wide range of biological events in the organism.
T3 310-490 Sentence denotes The action of each particular CDPK is strictly regulated by many mechanisms in order to ensure an accurate signal translation and the activation of the adequate response processes.
T4 491-634 Sentence denotes In this work, we investigated the regulation of a CDPK involved in rice cold stress response, OsCPK17, to better understand its mode of action.
T5 635-784 Sentence denotes We identified two new alternative splicing (AS) mRNA forms of OsCPK17 encoding truncated versions of the protein, missing the CDPK activation domain.
T6 785-925 Sentence denotes We analyzed the expression patterns of all AS variants in rice tissues and examined their subcellular localization in onion epidermal cells.
T7 926-1099 Sentence denotes The results indicate that the AS of OsCPK17 putatively originates truncated forms of the protein with distinct functions, and different subcellular and tissue distributions.
T8 1100-1221 Sentence denotes Additionally, we addressed the regulation of OsCPK17 by post-translational modifications in several in vitro experiments.
T9 1222-1382 Sentence denotes Our analysis indicated that OsCPK17 activity depends on its structural rearrangement induced by calcium binding, and that the protein can be autophosphorylated.
T10 1383-1466 Sentence denotes The identified phosphorylation sites mostly populate the OsCPK17 N-terminal domain.
T11 1467-1564 Sentence denotes Exceptions are phosphosites T107 and S136 in the kinase domain and S558 in the C-terminal domain.
T12 1565-1678 Sentence denotes These phosphosites seem conserved in CDPKs and may reflect a common regulatory mechanism for this protein family.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-140 Sentence denotes The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications.
T2 141-309 Sentence denotes Plant calcium-dependent protein kinases (CDPKs) are key proteins implicated in calcium-mediated signaling pathways of a wide range of biological events in the organism.
T3 310-490 Sentence denotes The action of each particular CDPK is strictly regulated by many mechanisms in order to ensure an accurate signal translation and the activation of the adequate response processes.
T4 491-634 Sentence denotes In this work, we investigated the regulation of a CDPK involved in rice cold stress response, OsCPK17, to better understand its mode of action.
T5 635-784 Sentence denotes We identified two new alternative splicing (AS) mRNA forms of OsCPK17 encoding truncated versions of the protein, missing the CDPK activation domain.
T6 785-925 Sentence denotes We analyzed the expression patterns of all AS variants in rice tissues and examined their subcellular localization in onion epidermal cells.
T7 926-1099 Sentence denotes The results indicate that the AS of OsCPK17 putatively originates truncated forms of the protein with distinct functions, and different subcellular and tissue distributions.
T8 1100-1221 Sentence denotes Additionally, we addressed the regulation of OsCPK17 by post-translational modifications in several in vitro experiments.
T9 1222-1382 Sentence denotes Our analysis indicated that OsCPK17 activity depends on its structural rearrangement induced by calcium binding, and that the protein can be autophosphorylated.
T10 1383-1466 Sentence denotes The identified phosphorylation sites mostly populate the OsCPK17 N-terminal domain.
T11 1467-1564 Sentence denotes Exceptions are phosphosites T107 and S136 in the kinase domain and S558 in the C-terminal domain.
T12 1565-1678 Sentence denotes These phosphosites seem conserved in CDPKs and may reflect a common regulatory mechanism for this protein family.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-140 Sentence denotes The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications.
T2 141-309 Sentence denotes Plant calcium-dependent protein kinases (CDPKs) are key proteins implicated in calcium-mediated signaling pathways of a wide range of biological events in the organism.
T3 310-490 Sentence denotes The action of each particular CDPK is strictly regulated by many mechanisms in order to ensure an accurate signal translation and the activation of the adequate response processes.
T4 491-634 Sentence denotes In this work, we investigated the regulation of a CDPK involved in rice cold stress response, OsCPK17, to better understand its mode of action.
T5 635-784 Sentence denotes We identified two new alternative splicing (AS) mRNA forms of OsCPK17 encoding truncated versions of the protein, missing the CDPK activation domain.
T6 785-925 Sentence denotes We analyzed the expression patterns of all AS variants in rice tissues and examined their subcellular localization in onion epidermal cells.
T7 926-1099 Sentence denotes The results indicate that the AS of OsCPK17 putatively originates truncated forms of the protein with distinct functions, and different subcellular and tissue distributions.
T8 1100-1221 Sentence denotes Additionally, we addressed the regulation of OsCPK17 by post-translational modifications in several in vitro experiments.
T9 1222-1382 Sentence denotes Our analysis indicated that OsCPK17 activity depends on its structural rearrangement induced by calcium binding, and that the protein can be autophosphorylated.
T10 1383-1466 Sentence denotes The identified phosphorylation sites mostly populate the OsCPK17 N-terminal domain.
T11 1467-1564 Sentence denotes Exceptions are phosphosites T107 and S136 in the kinase domain and S558 in the C-terminal domain.
T12 1565-1678 Sentence denotes These phosphosites seem conserved in CDPKs and may reflect a common regulatory mechanism for this protein family.