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LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 13-18 OrganismTaxon denotes mouse NCBItxid:10090|NCBItxid:10088
T3 296-300 OrganismTaxon denotes mice NCBItxid:10095|NCBItxid:10088
T5 332-337 OrganismTaxon denotes mouse NCBItxid:10090|NCBItxid:10088
T7 350-355 OrganismTaxon denotes human NCBItxid:9606
T8 1690-1695 OrganismTaxon denotes mouse NCBItxid:10090|NCBItxid:10088
T10 1761-1766 OrganismTaxon denotes human NCBItxid:9606
T11 1849-1854 OrganismTaxon denotes human NCBItxid:9606

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T1 0-72 Sentence denotes An inducible mouse model of podocin-mutation-related nephrotic syndrome.
T2 73-156 Sentence denotes Mutations in the NPHS2 gene, encoding podocin, cause hereditary nephrotic syndrome.
T3 157-286 Sentence denotes The most common podocin mutation, R138Q, is associated with early disease onset and rapid progression to end-stage renal disease.
T4 287-443 Sentence denotes Knock-in mice carrying a R140Q mutation, the mouse analogue of human R138Q, show developmental arrest of podocytes and lethal renal failure at neonatal age.
T5 444-632 Sentence denotes Here we created a conditional podocin knock-in model named NPHS2 R140Q/-, using a tamoxifen-inducible Cre recombinase, which permits to study the effects of the mutation in postnatal life.
T6 633-751 Sentence denotes Within the first week of R140Q hemizygosity induction the animals developed proteinuria, which peaked after 4-5 weeks.
T7 752-856 Sentence denotes Subsequently the animals developed progressive renal failure, with a median survival time of 12 (95% CI:
T8 857-870 Sentence denotes 11-13) weeks.
T9 871-994 Sentence denotes Foot process fusion was observed within one week, progressing to severe and global effacement in the course of the disease.
T10 995-1119 Sentence denotes The number of podocytes per glomerulus gradually diminished to 18% compared to healthy controls 12-16 weeks after induction.
T11 1120-1223 Sentence denotes The fraction of segmentally sclerosed glomeruli was 25%, 85% and 97% at 2, 4 and 8 weeks, respectively.
T12 1224-1382 Sentence denotes Severe tubulointerstitial fibrosis was present at later disease stage and was correlated quantitatively with the level of proteinuria at early disease stages.
T13 1383-1516 Sentence denotes While R140Q podocin mRNA expression was elevated, protein abundance was reduced by more than 50% within one week following induction.
T14 1517-1646 Sentence denotes Whereas miRNA21 expression persistently increased during the first 4 weeks, miRNA-193a expression peaked 2 weeks after induction.
T15 1647-1864 Sentence denotes In conclusion, the inducible R140Q-podocin mouse model is an auspicious model of the most common genetic cause of human nephrotic syndrome, with a spontaneous disease course strongly reminiscent of the human disorder.
T16 1865-2089 Sentence denotes This model constitutes a valuable tool to test the efficacy of novel pharmacological interventions aimed to improve podocyte function and viability and attenuate proteinuria, glomerulosclerosis and progressive renal failure.

LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
13466 13-18 OrganismTaxon denotes mouse NCBITaxon:10090
13467 28-35 GeneOrGeneProduct denotes podocin NCBIGene:170484
13468 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome MESH:D009404
13469 90-95 GeneOrGeneProduct denotes NPHS2 NCBIGene:7827
13470 111-118 GeneOrGeneProduct denotes podocin NCBIGene:7827
13471 137-155 DiseaseOrPhenotypicFeature denotes nephrotic syndrome MESH:D009404
13472 173-180 GeneOrGeneProduct denotes podocin NCBIGene:7827
13473 191-196 SequenceVariant denotes R138Q DBSNP:rs74315342
13474 272-285 DiseaseOrPhenotypicFeature denotes renal disease MESH:D007674
13475 296-300 OrganismTaxon denotes mice NCBITaxon:10090
13476 312-317 SequenceVariant denotes R140Q p|SUB|R|140|Q
13477 332-337 OrganismTaxon denotes mouse NCBITaxon:10090
13478 350-355 OrganismTaxon denotes human NCBITaxon:9606
13479 356-361 SequenceVariant denotes R138Q DBSNP:rs74315342
13480 413-426 DiseaseOrPhenotypicFeature denotes renal failure MESH:D051437
13481 474-481 GeneOrGeneProduct denotes podocin NCBIGene:170484
13482 503-508 GeneOrGeneProduct denotes NPHS2 NCBIGene:170484
13483 509-514 SequenceVariant denotes R140Q p|SUB|R|140|Q
13484 526-535 ChemicalEntity denotes tamoxifen MESH:D013629
13485 658-663 SequenceVariant denotes R140Q p|SUB|R|140|Q
13486 709-720 DiseaseOrPhenotypicFeature denotes proteinuria MESH:D011507
13487 799-812 DiseaseOrPhenotypicFeature denotes renal failure MESH:D051437
13488 1231-1258 DiseaseOrPhenotypicFeature denotes tubulointerstitial fibrosis MESH:D007674
13489 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria MESH:D011507
13490 1389-1394 SequenceVariant denotes R140Q p|SUB|R|140|Q
13491 1395-1402 GeneOrGeneProduct denotes podocin NCBIGene:170484
13492 1525-1532 GeneOrGeneProduct denotes miRNA21 NCBIGene:406991
13493 1593-1603 GeneOrGeneProduct denotes miRNA-193a NCBIGene:406968
13494 1676-1681 SequenceVariant denotes R140Q p|SUB|R|140|Q
13495 1682-1689 GeneOrGeneProduct denotes podocin NCBIGene:170484
13496 1690-1695 OrganismTaxon denotes mouse NCBITaxon:10090
13497 1761-1766 OrganismTaxon denotes human NCBITaxon:9606
13498 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome MESH:D009404
13499 1849-1854 OrganismTaxon denotes human NCBITaxon:9606
13500 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria MESH:D011507
13501 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis MESH:D005921
13502 2075-2088 DiseaseOrPhenotypicFeature denotes renal failure MESH:D051437

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome 0005377
T2 137-155 DiseaseOrPhenotypicFeature denotes nephrotic syndrome 0005377
T3 709-720 DiseaseOrPhenotypicFeature denotes proteinuria 0003634
T4 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria 0003634
T5 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome 0005377
T6 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria 0003634
T7 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis 0000490

LitCoin-SeqVar

Id Subject Object Predicate Lexical cue
T1 191-196 SequenceVariant denotes R138Q
T2 312-317 SequenceVariant denotes R140Q
T3 356-361 SequenceVariant denotes R138Q
T4 509-514 SequenceVariant denotes R140Q
T5 658-663 SequenceVariant denotes R140Q
T6 1389-1394 SequenceVariant denotes R140Q
T7 1676-1681 SequenceVariant denotes R140Q

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 3-12 GeneOrGeneProduct denotes inducible
T2 28-35 GeneOrGeneProduct denotes podocin
T3 36-44 GeneOrGeneProduct denotes mutation
T4 63-71 GeneOrGeneProduct denotes syndrome
T5 73-82 GeneOrGeneProduct denotes Mutations
T6 90-95 GeneOrGeneProduct denotes NPHS2
T7 111-118 GeneOrGeneProduct denotes podocin
T8 147-155 GeneOrGeneProduct denotes syndrome
T9 173-180 GeneOrGeneProduct denotes podocin
T10 181-189 GeneOrGeneProduct denotes mutation
T11 217-222 GeneOrGeneProduct denotes early
T12 262-265 GeneOrGeneProduct denotes end
T13 296-300 GeneOrGeneProduct denotes mice
T14 318-326 GeneOrGeneProduct denotes mutation
T15 382-388 GeneOrGeneProduct denotes arrest
T16 406-412 GeneOrGeneProduct denotes lethal
T17 452-459 GeneOrGeneProduct denotes created
T18 474-481 GeneOrGeneProduct denotes podocin
T19 503-508 GeneOrGeneProduct denotes NPHS2
T20 536-545 GeneOrGeneProduct denotes inducible
T21 550-561 GeneOrGeneProduct denotes recombinase
T22 605-613 GeneOrGeneProduct denotes mutation
T23 837-841 GeneOrGeneProduct denotes time
T24 876-883 GeneOrGeneProduct denotes process
T25 884-890 GeneOrGeneProduct denotes fusion
T26 1019-1022 GeneOrGeneProduct denotes per
T27 1189-1193 GeneOrGeneProduct denotes at 2
T28 1195-1200 GeneOrGeneProduct denotes 4 and
T29 1271-1279 GeneOrGeneProduct denotes at later
T30 1361-1366 GeneOrGeneProduct denotes early
T31 1395-1402 GeneOrGeneProduct denotes podocin
T32 1403-1407 GeneOrGeneProduct denotes mRNA
T33 1433-1440 GeneOrGeneProduct denotes protein
T34 1455-1462 GeneOrGeneProduct denotes reduced
T35 1525-1532 GeneOrGeneProduct denotes miRNA21
T36 1544-1556 GeneOrGeneProduct denotes persistently
T37 1615-1623 GeneOrGeneProduct denotes peaked 2
T38 1666-1675 GeneOrGeneProduct denotes inducible
T39 1682-1689 GeneOrGeneProduct denotes podocin
T40 1777-1785 GeneOrGeneProduct denotes syndrome
T41 1907-1911 GeneOrGeneProduct denotes test
T42 1928-1933 GeneOrGeneProduct denotes novel
T43 2003-2012 GeneOrGeneProduct denotes viability
T44 2017-2026 GeneOrGeneProduct denotes attenuate

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 3-12 GeneOrGeneProduct denotes inducible
T2 28-35 GeneOrGeneProduct denotes podocin
T3 63-71 GeneOrGeneProduct denotes syndrome
T4 90-95 GeneOrGeneProduct denotes NPHS2
T5 111-118 GeneOrGeneProduct denotes podocin
T6 147-155 GeneOrGeneProduct denotes syndrome
T7 173-180 GeneOrGeneProduct denotes podocin
T8 217-222 GeneOrGeneProduct denotes early
T9 382-388 GeneOrGeneProduct denotes arrest
T10 406-412 GeneOrGeneProduct denotes lethal
T11 474-481 GeneOrGeneProduct denotes podocin
T12 503-508 GeneOrGeneProduct denotes NPHS2
T13 536-545 GeneOrGeneProduct denotes inducible
T14 550-561 GeneOrGeneProduct denotes recombinase
T15 884-890 GeneOrGeneProduct denotes fusion
T16 1361-1366 GeneOrGeneProduct denotes early
T17 1395-1402 GeneOrGeneProduct denotes podocin
T18 1403-1407 GeneOrGeneProduct denotes mRNA
T19 1433-1440 GeneOrGeneProduct denotes protein
T20 1455-1462 GeneOrGeneProduct denotes reduced
T21 1525-1532 GeneOrGeneProduct denotes miRNA21
T22 1666-1675 GeneOrGeneProduct denotes inducible
T23 1682-1689 GeneOrGeneProduct denotes podocin
T24 1777-1785 GeneOrGeneProduct denotes syndrome
T25 1928-1933 GeneOrGeneProduct denotes novel
T26 2003-2012 GeneOrGeneProduct denotes viability

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome D009404
T2 137-155 DiseaseOrPhenotypicFeature denotes nephrotic syndrome D009404
T3 223-230 DiseaseOrPhenotypicFeature denotes disease D004194
T4 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease D007676
T5 413-426 DiseaseOrPhenotypicFeature denotes renal failure D051437
T6 709-720 DiseaseOrPhenotypicFeature denotes proteinuria D011507
T7 799-812 DiseaseOrPhenotypicFeature denotes renal failure D051437
T8 986-993 DiseaseOrPhenotypicFeature denotes disease D004194
T9 1148-1157 DiseaseOrPhenotypicFeature denotes sclerosed D012598
T10 1250-1258 DiseaseOrPhenotypicFeature denotes fibrosis D005355
T11 1280-1287 DiseaseOrPhenotypicFeature denotes disease D004194
T12 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria D011507
T13 1367-1374 DiseaseOrPhenotypicFeature denotes disease D004194
T14 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome D009404
T15 1806-1813 DiseaseOrPhenotypicFeature denotes disease D004194
T16 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria D011507
T17 2075-2088 DiseaseOrPhenotypicFeature denotes renal failure D051437

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 28-35 GeneOrGeneProduct denotes podocin
T2 90-95 GeneOrGeneProduct denotes NPHS2
T3 111-118 GeneOrGeneProduct denotes podocin
T4 173-180 GeneOrGeneProduct denotes podocin
T5 474-481 GeneOrGeneProduct denotes podocin
T6 503-508 GeneOrGeneProduct denotes NPHS2
T7 1395-1402 GeneOrGeneProduct denotes podocin
T8 1525-1532 GeneOrGeneProduct denotes miRNA21
T9 1682-1689 GeneOrGeneProduct denotes podocin

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome 0005377
T2 90-95 DiseaseOrPhenotypicFeature denotes NPHS2 0044765|0010974
T4 126-155 DiseaseOrPhenotypicFeature denotes hereditary nephrotic syndrome 0002350
T5 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease 0004375
T6 413-426 DiseaseOrPhenotypicFeature denotes renal failure 0001106
T7 503-508 DiseaseOrPhenotypicFeature denotes NPHS2 0044765|0010974
T9 709-720 DiseaseOrPhenotypicFeature denotes proteinuria 0003634
T10 799-812 DiseaseOrPhenotypicFeature denotes renal failure 0001106
T11 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria 0003634
T12 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome 0005377
T13 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria 0003634
T14 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis 0000490
T15 2075-2088 DiseaseOrPhenotypicFeature denotes renal failure 0001106

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome D009404
T2 137-155 DiseaseOrPhenotypicFeature denotes nephrotic syndrome D009404
T3 223-230 DiseaseOrPhenotypicFeature denotes disease D004194
T4 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease D007676
T5 413-426 DiseaseOrPhenotypicFeature denotes renal failure D051437
T6 709-720 DiseaseOrPhenotypicFeature denotes proteinuria D011507
T7 799-812 DiseaseOrPhenotypicFeature denotes renal failure D051437
T8 986-993 DiseaseOrPhenotypicFeature denotes disease D004194
T9 1250-1258 DiseaseOrPhenotypicFeature denotes fibrosis D005355
T10 1280-1287 DiseaseOrPhenotypicFeature denotes disease D004194
T11 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria D011507
T12 1367-1374 DiseaseOrPhenotypicFeature denotes disease D004194
T13 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome D009404
T14 1806-1813 DiseaseOrPhenotypicFeature denotes disease D004194
T15 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria D011507
T16 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis DISEASE
T17 2075-2088 DiseaseOrPhenotypicFeature denotes renal failure D051437

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome D009404
T2 137-155 DiseaseOrPhenotypicFeature denotes nephrotic syndrome D009404
T3 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease D007676
T4 413-426 DiseaseOrPhenotypicFeature denotes renal failure D051437
T5 709-720 DiseaseOrPhenotypicFeature denotes proteinuria D011507
T6 799-812 DiseaseOrPhenotypicFeature denotes renal failure D051437
T7 1250-1258 DiseaseOrPhenotypicFeature denotes fibrosis D005355
T8 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria D011507
T9 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome D009404
T10 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria D011507
T11 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis DISEASE
T12 2075-2088 DiseaseOrPhenotypicFeature denotes renal failure D051437

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 13-18 OrganismTaxon denotes mouse
T2 296-300 OrganismTaxon denotes mice
T3 332-337 OrganismTaxon denotes mouse
T4 350-355 OrganismTaxon denotes human
T5 1690-1695 OrganismTaxon denotes mouse
T6 1761-1766 OrganismTaxon denotes human
T7 1849-1854 OrganismTaxon denotes human

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 526-535 ChemicalEntity denotes tamoxifen D013629|http://purl.obolibrary.org/obo/CHEBI_41774
T3 546-561 ChemicalEntity denotes Cre recombinase C045073

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID:
T3 546-561 ChemicalEntity denotes Cre recombinase C045073
T1 526-535 ChemicalEntity denotes tamoxifen http://purl.obolibrary.org/obo/CHEBI_41774|D013629
T9 1682-1689 GeneOrGeneProduct denotes podocin
T8 1525-1532 GeneOrGeneProduct denotes miRNA21
T7 1395-1402 GeneOrGeneProduct denotes podocin
T6 503-508 GeneOrGeneProduct denotes NPHS2
T5 474-481 GeneOrGeneProduct denotes podocin
T4 173-180 GeneOrGeneProduct denotes podocin
T10911 111-118 GeneOrGeneProduct denotes podocin
T2 90-95 GeneOrGeneProduct denotes NPHS2
T12364 28-35 GeneOrGeneProduct denotes podocin
T12 2075-2088 DiseaseOrPhenotypicFeature denotes renal failure D051437
T11 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis DISEASE
T10 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria D011507
T45427 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome D009404
T53049 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria D011507
T63547 1250-1258 DiseaseOrPhenotypicFeature denotes fibrosis D005355
T28747 799-812 DiseaseOrPhenotypicFeature denotes renal failure D051437
T95215 709-720 DiseaseOrPhenotypicFeature denotes proteinuria D011507
T70014 413-426 DiseaseOrPhenotypicFeature denotes renal failure D051437
T19913 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease D007676
T41330 137-155 DiseaseOrPhenotypicFeature denotes nephrotic syndrome D009404
T24073 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome D009404
T23115 1849-1854 OrganismTaxon denotes human
T40596 1761-1766 OrganismTaxon denotes human
T64328 1690-1695 OrganismTaxon denotes mouse
T89878 350-355 OrganismTaxon denotes human
T53346 332-337 OrganismTaxon denotes mouse
T57397 296-300 OrganismTaxon denotes mice
T15197 13-18 OrganismTaxon denotes mouse
T74446 1676-1681 SequenceVariant denotes R140Q
T82552 1389-1394 SequenceVariant denotes R140Q
T80913 658-663 SequenceVariant denotes R140Q
T82040 509-514 SequenceVariant denotes R140Q
T66714 356-361 SequenceVariant denotes R138Q
T35876 312-317 SequenceVariant denotes R140Q
T66323 191-196 SequenceVariant denotes R138Q

biored-valid-deepseek-nr-ng

Id Subject Object Predicate Lexical cue
T1 28-35 GeneOrGeneProduct denotes podocin
T2 90-95 GeneOrGeneProduct denotes NPHS2
T3 191-196 SequenceVariant denotes R138Q
T4 312-317 SequenceVariant denotes R140Q
T5 1389-1394 SequenceVariant denotes R140Q
T6 1395-1402 GeneOrGeneProduct denotes podocin
T7 1525-1532 GeneOrGeneProduct denotes miRNA21
T8 1593-1603 GeneOrGeneProduct denotes miRNA-193a

biored-valid

Id Subject Object Predicate Lexical cue
T1 13-18 OrganismTaxon denotes mouse
T2 28-35 GeneOrGeneProduct denotes podocin
T3 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T4 90-95 GeneOrGeneProduct denotes NPHS2
T5 111-118 GeneOrGeneProduct denotes podocin
T6 137-155 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T7 173-180 GeneOrGeneProduct denotes podocin
T8 191-196 SequenceVariant denotes R138Q
T9 272-285 DiseaseOrPhenotypicFeature denotes renal disease
T10 296-300 OrganismTaxon denotes mice
T11 312-317 SequenceVariant denotes R140Q
T12 332-337 OrganismTaxon denotes mouse
T13 350-355 OrganismTaxon denotes human
T14 356-361 SequenceVariant denotes R138Q
T15 413-426 DiseaseOrPhenotypicFeature denotes renal failure
T16 474-481 GeneOrGeneProduct denotes podocin
T17 503-508 GeneOrGeneProduct denotes NPHS2
T18 509-514 SequenceVariant denotes R140Q
T19 526-535 ChemicalEntity denotes tamoxifen
T20 658-663 SequenceVariant denotes R140Q
T21 709-720 DiseaseOrPhenotypicFeature denotes proteinuria
T22 799-812 DiseaseOrPhenotypicFeature denotes renal failure
T23 1231-1258 DiseaseOrPhenotypicFeature denotes tubulointerstitial fibrosis
T24 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria
T25 1389-1394 SequenceVariant denotes R140Q
T26 1395-1402 GeneOrGeneProduct denotes podocin
T27 1525-1532 GeneOrGeneProduct denotes miRNA21
T28 1593-1603 GeneOrGeneProduct denotes miRNA-193a
T29 1676-1681 SequenceVariant denotes R140Q
T30 1682-1689 GeneOrGeneProduct denotes podocin
T31 1690-1695 OrganismTaxon denotes mouse
T32 1761-1766 OrganismTaxon denotes human
T33 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T34 1849-1854 OrganismTaxon denotes human
T35 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria
T36 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis
T37 2075-2088 DiseaseOrPhenotypicFeature denotes renal failure

biored-valid-deepseek-nr-g

Id Subject Object Predicate Lexical cue
T1 13-18 OrganismTaxon denotes mouse
T2 28-35 GeneOrGeneProduct denotes podocin
T3 90-95 GeneOrGeneProduct denotes NPHS2
T4 111-118 GeneOrGeneProduct denotes podocin
T5 126-155 DiseaseOrPhenotypicFeature denotes hereditary nephrotic syndrome
T6 173-180 GeneOrGeneProduct denotes podocin
T7 191-196 SequenceVariant denotes R138Q
T8 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease
T9 296-300 OrganismTaxon denotes mice
T10 312-317 SequenceVariant denotes R140Q
T11 332-337 OrganismTaxon denotes mouse
T12 350-355 OrganismTaxon denotes human
T13 356-361 SequenceVariant denotes R138Q
T14 368-388 DiseaseOrPhenotypicFeature denotes developmental arrest
T15 392-401 CellLine denotes podocytes
T16 406-426 DiseaseOrPhenotypicFeature denotes lethal renal failure
T17 430-442 DiseaseOrPhenotypicFeature denotes neonatal age
T18 474-481 GeneOrGeneProduct denotes podocin
T19 503-508 GeneOrGeneProduct denotes NPHS2
T20 509-514 SequenceVariant denotes R140Q
T21 526-545 ChemicalEntity denotes tamoxifen-inducible
T22 546-549 GeneOrGeneProduct denotes Cre
T23 550-561 GeneOrGeneProduct denotes recombinase
T24 658-663 SequenceVariant denotes R140Q
T25 664-676 DiseaseOrPhenotypicFeature denotes hemizygosity
T26 709-720 DiseaseOrPhenotypicFeature denotes proteinuria
T27 787-812 DiseaseOrPhenotypicFeature denotes progressive renal failure
T28 871-890 DiseaseOrPhenotypicFeature denotes Foot process fusion
T29 936-964 DiseaseOrPhenotypicFeature denotes severe and global effacement
T30 1009-1018 CellLine denotes podocytes
T31 1023-1033 DiseaseOrPhenotypicFeature denotes glomerulus
T32 1136-1167 DiseaseOrPhenotypicFeature denotes segmentally sclerosed glomeruli
T33 1224-1258 DiseaseOrPhenotypicFeature denotes Severe tubulointerstitial fibrosis
T34 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria
T35 1389-1394 SequenceVariant denotes R140Q
T36 1395-1402 GeneOrGeneProduct denotes podocin
T37 1403-1407 GeneOrGeneProduct denotes mRNA
T38 1525-1532 GeneOrGeneProduct denotes miRNA21
T39 1593-1603 GeneOrGeneProduct denotes miRNA-193a
T40 1690-1695 OrganismTaxon denotes mouse
T41 1761-1785 DiseaseOrPhenotypicFeature denotes human nephrotic syndrome
T42 1849-1863 DiseaseOrPhenotypicFeature denotes human disorder
T43 1981-1989 CellLine denotes podocyte
T44 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis
T45 2063-2088 DiseaseOrPhenotypicFeature denotes progressive renal failure

biored-valid-deepseek-r-ng

Id Subject Object Predicate Lexical cue
T1 13-18 OrganismTaxon denotes mouse
T2 28-35 GeneOrGeneProduct denotes podocin
T3 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T4 90-100 GeneOrGeneProduct denotes NPHS2 gene
T5 191-196 SequenceVariant denotes R138Q
T6 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease
T7 312-317 SequenceVariant denotes R140Q
T8 350-355 OrganismTaxon denotes human
T9 413-426 DiseaseOrPhenotypicFeature denotes renal failure
T10 526-535 ChemicalEntity denotes tamoxifen
T11 546-561 GeneOrGeneProduct denotes Cre recombinase
T12 709-720 DiseaseOrPhenotypicFeature denotes proteinuria
T13 1250-1258 DiseaseOrPhenotypicFeature denotes fibrosis
T14 1525-1532 GeneOrGeneProduct denotes miRNA21
T15 1593-1603 GeneOrGeneProduct denotes miRNA-193a
T16 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis

biored-valid-deepseek-r-g

Id Subject Object Predicate Lexical cue
T1 13-18 OrganismTaxon denotes mouse
T2 28-35 GeneOrGeneProduct denotes podocin
T3 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T4 90-95 GeneOrGeneProduct denotes NPHS2
T5 111-118 GeneOrGeneProduct denotes podocin
T6 126-155 DiseaseOrPhenotypicFeature denotes hereditary nephrotic syndrome
T7 191-196 SequenceVariant denotes R138Q
T8 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease
T9 312-317 SequenceVariant denotes R140Q
T10 332-337 OrganismTaxon denotes mouse
T11 350-355 OrganismTaxon denotes human
T12 526-535 ChemicalEntity denotes tamoxifen
T13 546-561 GeneOrGeneProduct denotes Cre recombinase
T14 709-720 DiseaseOrPhenotypicFeature denotes proteinuria
T15 787-812 DiseaseOrPhenotypicFeature denotes progressive renal failure
T16 1136-1167 DiseaseOrPhenotypicFeature denotes segmentally sclerosed glomeruli
T17 1231-1258 DiseaseOrPhenotypicFeature denotes tubulointerstitial fibrosis
T18 1525-1532 GeneOrGeneProduct denotes miRNA21
T19 1593-1603 GeneOrGeneProduct denotes miRNA-193a
T20 1761-1785 DiseaseOrPhenotypicFeature denotes human nephrotic syndrome
T21 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis

biored-valid-gemini-nr-ng

Id Subject Object Predicate Lexical cue
T1 13-18 OrganismTaxon denotes mouse
T2 28-71 DiseaseOrPhenotypicFeature denotes podocin-mutation-related nephrotic syndrome
T3 90-95 GeneOrGeneProduct denotes NPHS2
T4 111-118 GeneOrGeneProduct denotes podocin
T5 126-155 DiseaseOrPhenotypicFeature denotes hereditary nephrotic syndrome
T6 173-180 GeneOrGeneProduct denotes podocin
T7 181-189 SequenceVariant denotes mutation
T8 191-196 SequenceVariant denotes R138Q
T9 217-236 DiseaseOrPhenotypicFeature denotes early disease onset
T10 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease
T11 287-295 SequenceVariant denotes Knock-in
T12 296-300 OrganismTaxon denotes mice
T13 312-317 SequenceVariant denotes R140Q
T14 318-326 SequenceVariant denotes mutation
T15 332-337 OrganismTaxon denotes mouse
T16 350-355 OrganismTaxon denotes human
T17 356-361 SequenceVariant denotes R138Q
T18 368-388 DiseaseOrPhenotypicFeature denotes developmental arrest
T19 406-426 DiseaseOrPhenotypicFeature denotes lethal renal failure
T20 474-481 GeneOrGeneProduct denotes podocin
T21 482-490 SequenceVariant denotes knock-in
T22 503-508 GeneOrGeneProduct denotes NPHS2
T23 509-514 SequenceVariant denotes R140Q
T24 526-535 ChemicalEntity denotes tamoxifen
T25 546-561 GeneOrGeneProduct denotes Cre recombinase
T26 605-613 SequenceVariant denotes mutation
T27 664-686 SequenceVariant denotes hemizygosity induction
T28 709-720 DiseaseOrPhenotypicFeature denotes proteinuria
T29 787-812 DiseaseOrPhenotypicFeature denotes progressive renal failure
T30 871-890 DiseaseOrPhenotypicFeature denotes Foot process fusion
T31 936-967 DiseaseOrPhenotypicFeature denotes severe and global effacement in
T32 1136-1157 DiseaseOrPhenotypicFeature denotes segmentally sclerosed
T33 1231-1258 DiseaseOrPhenotypicFeature denotes tubulointerstitial fibrosis
T34 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria
T35 1389-1394 SequenceVariant denotes R140Q
T36 1395-1402 GeneOrGeneProduct denotes podocin
T37 1403-1418 GeneOrGeneProduct denotes mRNA expression
T38 1525-1532 GeneOrGeneProduct denotes miRNA21
T39 1593-1603 GeneOrGeneProduct denotes miRNA-193a
T40 1690-1695 OrganismTaxon denotes mouse
T41 1761-1766 OrganismTaxon denotes human
T42 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T43 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria
T44 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis
T45 2063-2088 DiseaseOrPhenotypicFeature denotes progressive renal failure

biored-valid-gemini-r-ng

Id Subject Object Predicate Lexical cue
T1 13-18 OrganismTaxon denotes mouse
T2 28-35 GeneOrGeneProduct denotes podocin
T3 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T4 90-100 GeneOrGeneProduct denotes NPHS2 gene
T5 111-118 GeneOrGeneProduct denotes podocin
T6 126-155 DiseaseOrPhenotypicFeature denotes hereditary nephrotic syndrome
T7 173-180 GeneOrGeneProduct denotes podocin
T8 191-196 SequenceVariant denotes R138Q
T9 217-236 DiseaseOrPhenotypicFeature denotes early disease onset
T10 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease
T11 296-300 OrganismTaxon denotes mice
T12 312-317 SequenceVariant denotes R140Q
T13 332-337 OrganismTaxon denotes mouse
T14 350-355 OrganismTaxon denotes human
T15 356-361 SequenceVariant denotes R138Q
T16 368-401 DiseaseOrPhenotypicFeature denotes developmental arrest of podocytes
T17 406-426 DiseaseOrPhenotypicFeature denotes lethal renal failure
T18 474-481 GeneOrGeneProduct denotes podocin
T19 503-508 GeneOrGeneProduct denotes NPHS2
T20 509-514 SequenceVariant denotes R140Q
T21 526-535 ChemicalEntity denotes tamoxifen
T22 546-561 GeneOrGeneProduct denotes Cre recombinase
T23 658-676 DiseaseOrPhenotypicFeature denotes R140Q hemizygosity
T24 709-720 DiseaseOrPhenotypicFeature denotes proteinuria
T25 787-812 DiseaseOrPhenotypicFeature denotes progressive renal failure
T26 871-890 DiseaseOrPhenotypicFeature denotes Foot process fusion
T27 936-964 DiseaseOrPhenotypicFeature denotes severe and global effacement
T28 1136-1167 DiseaseOrPhenotypicFeature denotes segmentally sclerosed glomeruli
T29 1224-1258 DiseaseOrPhenotypicFeature denotes Severe tubulointerstitial fibrosis
T30 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria
T31 1389-1394 SequenceVariant denotes R140Q
T32 1395-1402 GeneOrGeneProduct denotes podocin
T33 1403-1407 ChemicalEntity denotes mRNA
T34 1525-1532 GeneOrGeneProduct denotes miRNA21
T35 1593-1603 GeneOrGeneProduct denotes miRNA-193a
T36 1676-1681 SequenceVariant denotes R140Q
T37 1682-1689 GeneOrGeneProduct denotes podocin
T38 1690-1695 OrganismTaxon denotes mouse
T39 1761-1766 OrganismTaxon denotes human
T40 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T41 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria
T42 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis
T43 2063-2088 DiseaseOrPhenotypicFeature denotes progressive renal failure

biored-valid-gemini-r-g

Id Subject Object Predicate Lexical cue
T1 13-18 OrganismTaxon denotes mouse
T2 28-35 GeneOrGeneProduct denotes podocin
T3 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T4 90-95 GeneOrGeneProduct denotes NPHS2
T5 111-118 GeneOrGeneProduct denotes podocin
T6 137-155 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T7 173-180 GeneOrGeneProduct denotes podocin
T8 191-196 SequenceVariant denotes R138Q
T9 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease
T10 296-300 OrganismTaxon denotes mice
T11 312-317 SequenceVariant denotes R140Q
T12 332-337 OrganismTaxon denotes mouse
T13 350-355 OrganismTaxon denotes human
T14 356-361 SequenceVariant denotes R138Q
T15 413-426 DiseaseOrPhenotypicFeature denotes renal failure
T16 474-481 GeneOrGeneProduct denotes podocin
T17 503-508 GeneOrGeneProduct denotes NPHS2
T18 509-514 SequenceVariant denotes R140Q
T19 526-535 ChemicalEntity denotes tamoxifen
T20 546-561 GeneOrGeneProduct denotes Cre recombinase
T21 658-663 SequenceVariant denotes R140Q
T22 709-720 DiseaseOrPhenotypicFeature denotes proteinuria
T23 799-812 DiseaseOrPhenotypicFeature denotes renal failure
T24 871-890 DiseaseOrPhenotypicFeature denotes Foot process fusion
T25 954-964 DiseaseOrPhenotypicFeature denotes effacement
T26 1148-1167 DiseaseOrPhenotypicFeature denotes sclerosed glomeruli
T27 1231-1258 DiseaseOrPhenotypicFeature denotes tubulointerstitial fibrosis
T28 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria
T29 1389-1394 SequenceVariant denotes R140Q
T30 1395-1402 GeneOrGeneProduct denotes podocin
T31 1525-1532 GeneOrGeneProduct denotes miRNA21
T32 1593-1603 GeneOrGeneProduct denotes miRNA-193a
T33 1676-1681 SequenceVariant denotes R140Q
T34 1682-1689 GeneOrGeneProduct denotes podocin
T35 1690-1695 OrganismTaxon denotes mouse
T36 1761-1766 OrganismTaxon denotes human
T37 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T38 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria
T39 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis
T40 2075-2088 DiseaseOrPhenotypicFeature denotes renal failure

biored-valid-gpt-nr-ng

Id Subject Object Predicate Lexical cue
T1 13-18 OrganismTaxon denotes mouse
T2 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T3 90-95 GeneOrGeneProduct denotes NPHS2
T4 111-118 GeneOrGeneProduct denotes podocin
T5 126-155 DiseaseOrPhenotypicFeature denotes hereditary nephrotic syndrome
T6 173-180 GeneOrGeneProduct denotes podocin
T7 191-196 SequenceVariant denotes R138Q
T8 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease
T9 296-300 OrganismTaxon denotes mice
T10 312-317 SequenceVariant denotes R140Q
T11 332-337 OrganismTaxon denotes mouse
T12 350-355 OrganismTaxon denotes human
T13 356-361 SequenceVariant denotes R138Q
T14 368-401 DiseaseOrPhenotypicFeature denotes developmental arrest of podocytes
T15 406-426 DiseaseOrPhenotypicFeature denotes lethal renal failure
T16 474-481 GeneOrGeneProduct denotes podocin
T17 503-508 GeneOrGeneProduct denotes NPHS2
T18 509-516 SequenceVariant denotes R140Q/-
T19 526-535 ChemicalEntity denotes tamoxifen
T20 546-561 GeneOrGeneProduct denotes Cre recombinase
T21 658-663 SequenceVariant denotes R140Q
T22 709-720 DiseaseOrPhenotypicFeature denotes proteinuria
T23 787-812 DiseaseOrPhenotypicFeature denotes progressive renal failure
T24 871-890 DiseaseOrPhenotypicFeature denotes Foot process fusion
T25 954-964 DiseaseOrPhenotypicFeature denotes effacement
T26 1231-1258 DiseaseOrPhenotypicFeature denotes tubulointerstitial fibrosis
T27 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria
T28 1389-1394 SequenceVariant denotes R140Q
T29 1395-1407 GeneOrGeneProduct denotes podocin mRNA
T30 1525-1532 GeneOrGeneProduct denotes miRNA21
T31 1593-1603 GeneOrGeneProduct denotes miRNA-193a
T32 1690-1695 OrganismTaxon denotes mouse
T33 1761-1766 OrganismTaxon denotes human
T34 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T35 1849-1854 OrganismTaxon denotes human
T36 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria
T37 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis
T38 2063-2088 DiseaseOrPhenotypicFeature denotes progressive renal failure

biored-valid-gpt-nr-g

Id Subject Object Predicate Lexical cue
T1 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T2 90-95 GeneOrGeneProduct denotes NPHS2
T3 111-118 GeneOrGeneProduct denotes podocin
T4 137-155 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T5 173-180 GeneOrGeneProduct denotes podocin
T6 191-196 SequenceVariant denotes R138Q
T7 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease
T8 296-300 OrganismTaxon denotes mice
T9 312-317 SequenceVariant denotes R140Q
T10 332-337 OrganismTaxon denotes mouse
T11 350-355 OrganismTaxon denotes human
T12 356-361 SequenceVariant denotes R138Q
T13 413-426 DiseaseOrPhenotypicFeature denotes renal failure
T14 474-481 GeneOrGeneProduct denotes podocin
T15 503-508 GeneOrGeneProduct denotes NPHS2
T16 509-516 SequenceVariant denotes R140Q/-
T17 526-535 ChemicalEntity denotes tamoxifen
T18 546-561 GeneOrGeneProduct denotes Cre recombinase
T19 658-663 SequenceVariant denotes R140Q
T20 709-720 DiseaseOrPhenotypicFeature denotes proteinuria
T21 799-812 DiseaseOrPhenotypicFeature denotes renal failure
T22 1231-1258 DiseaseOrPhenotypicFeature denotes tubulointerstitial fibrosis
T23 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria
T24 1389-1394 SequenceVariant denotes R140Q
T25 1395-1402 GeneOrGeneProduct denotes podocin
T26 1525-1532 GeneOrGeneProduct denotes miRNA21
T27 1593-1603 GeneOrGeneProduct denotes miRNA-193a
T28 1690-1695 OrganismTaxon denotes mouse
T29 1761-1766 OrganismTaxon denotes human
T30 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T31 1849-1854 OrganismTaxon denotes human
T32 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria
T33 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis
T34 2075-2088 DiseaseOrPhenotypicFeature denotes renal failure

biored-valid-gpt-r-g

Id Subject Object Predicate Lexical cue
T1 13-18 OrganismTaxon denotes mouse
T2 28-35 GeneOrGeneProduct denotes podocin
T3 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T4 90-95 GeneOrGeneProduct denotes NPHS2
T5 111-118 GeneOrGeneProduct denotes podocin
T6 137-155 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T7 173-180 GeneOrGeneProduct denotes podocin
T8 191-196 SequenceVariant denotes R138Q
T9 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease
T10 296-300 OrganismTaxon denotes mice
T11 312-317 SequenceVariant denotes R140Q
T12 332-337 OrganismTaxon denotes mouse
T13 350-355 OrganismTaxon denotes human
T14 356-361 SequenceVariant denotes R138Q
T15 368-401 DiseaseOrPhenotypicFeature denotes developmental arrest of podocytes
T16 413-426 DiseaseOrPhenotypicFeature denotes renal failure
T17 474-481 GeneOrGeneProduct denotes podocin
T18 503-508 GeneOrGeneProduct denotes NPHS2
T19 509-516 SequenceVariant denotes R140Q/-
T20 526-535 ChemicalEntity denotes tamoxifen
T21 546-561 GeneOrGeneProduct denotes Cre recombinase
T22 658-663 SequenceVariant denotes R140Q
T23 709-720 DiseaseOrPhenotypicFeature denotes proteinuria
T24 799-812 DiseaseOrPhenotypicFeature denotes renal failure
T25 871-890 DiseaseOrPhenotypicFeature denotes Foot process fusion
T26 954-964 DiseaseOrPhenotypicFeature denotes effacement
T27 1136-1167 DiseaseOrPhenotypicFeature denotes segmentally sclerosed glomeruli
T28 1231-1258 DiseaseOrPhenotypicFeature denotes tubulointerstitial fibrosis
T29 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria
T30 1389-1394 SequenceVariant denotes R140Q
T31 1395-1407 GeneOrGeneProduct denotes podocin mRNA
T32 1525-1532 GeneOrGeneProduct denotes miRNA21
T33 1593-1603 GeneOrGeneProduct denotes miRNA-193a
T34 1676-1681 SequenceVariant denotes R140Q
T35 1682-1689 GeneOrGeneProduct denotes podocin
T36 1690-1695 OrganismTaxon denotes mouse
T37 1761-1766 OrganismTaxon denotes human
T38 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T39 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria
T40 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis
T41 2075-2088 DiseaseOrPhenotypicFeature denotes renal failure

biored-valid-gpt-r-ng

Id Subject Object Predicate Lexical cue
T1 13-18 OrganismTaxon denotes mouse
T2 28-35 GeneOrGeneProduct denotes podocin
T3 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T4 90-95 GeneOrGeneProduct denotes NPHS2
T5 111-118 GeneOrGeneProduct denotes podocin
T6 126-155 DiseaseOrPhenotypicFeature denotes hereditary nephrotic syndrome
T7 173-180 GeneOrGeneProduct denotes podocin
T8 191-196 SequenceVariant denotes R138Q
T9 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease
T10 296-300 OrganismTaxon denotes mice
T11 312-317 SequenceVariant denotes R140Q
T12 332-337 OrganismTaxon denotes mouse
T13 350-355 OrganismTaxon denotes human
T14 356-361 SequenceVariant denotes R138Q
T15 368-401 DiseaseOrPhenotypicFeature denotes developmental arrest of podocytes
T16 413-426 DiseaseOrPhenotypicFeature denotes renal failure
T17 474-481 GeneOrGeneProduct denotes podocin
T18 503-508 GeneOrGeneProduct denotes NPHS2
T19 509-516 SequenceVariant denotes R140Q/-
T20 526-535 ChemicalEntity denotes tamoxifen
T21 546-561 GeneOrGeneProduct denotes Cre recombinase
T22 658-663 SequenceVariant denotes R140Q
T23 709-720 DiseaseOrPhenotypicFeature denotes proteinuria
T24 799-812 DiseaseOrPhenotypicFeature denotes renal failure
T25 871-890 DiseaseOrPhenotypicFeature denotes Foot process fusion
T26 954-964 DiseaseOrPhenotypicFeature denotes effacement
T27 1136-1167 DiseaseOrPhenotypicFeature denotes segmentally sclerosed glomeruli
T28 1231-1258 DiseaseOrPhenotypicFeature denotes tubulointerstitial fibrosis
T29 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria
T30 1389-1394 SequenceVariant denotes R140Q
T31 1395-1402 GeneOrGeneProduct denotes podocin
T32 1525-1532 GeneOrGeneProduct denotes miRNA21
T33 1593-1603 GeneOrGeneProduct denotes miRNA-193a
T34 1676-1681 SequenceVariant denotes R140Q
T35 1682-1689 GeneOrGeneProduct denotes podocin
T36 1690-1695 OrganismTaxon denotes mouse
T37 1761-1766 OrganismTaxon denotes human
T38 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T39 1849-1854 OrganismTaxon denotes human
T40 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria
T41 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis
T42 2075-2088 DiseaseOrPhenotypicFeature denotes renal failure

biored-valid-gemini-nr-g

Id Subject Object Predicate Lexical cue
T1 13-18 OrganismTaxon denotes mouse
T2 28-35 GeneOrGeneProduct denotes podocin
T3 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T4 90-95 GeneOrGeneProduct denotes NPHS2
T5 111-118 GeneOrGeneProduct denotes podocin
T6 126-155 DiseaseOrPhenotypicFeature denotes hereditary nephrotic syndrome
T7 173-180 GeneOrGeneProduct denotes podocin
T8 181-189 SequenceVariant denotes mutation
T9 191-196 SequenceVariant denotes R138Q
T10 223-236 DiseaseOrPhenotypicFeature denotes disease onset
T11 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease
T12 287-295 GeneOrGeneProduct denotes Knock-in
T13 296-300 OrganismTaxon denotes mice
T14 312-317 SequenceVariant denotes R140Q
T15 318-326 SequenceVariant denotes mutation
T16 332-337 OrganismTaxon denotes mouse
T17 350-355 OrganismTaxon denotes human
T18 356-361 SequenceVariant denotes R138Q
T19 406-426 DiseaseOrPhenotypicFeature denotes lethal renal failure
T20 474-481 GeneOrGeneProduct denotes podocin
T21 482-490 GeneOrGeneProduct denotes knock-in
T22 503-516 SequenceVariant denotes NPHS2 R140Q/-
T23 526-535 ChemicalEntity denotes tamoxifen
T24 546-561 GeneOrGeneProduct denotes Cre recombinase
T25 605-613 SequenceVariant denotes mutation
T26 658-663 SequenceVariant denotes R140Q
T27 709-720 DiseaseOrPhenotypicFeature denotes proteinuria
T28 787-812 DiseaseOrPhenotypicFeature denotes progressive renal failure
T29 871-890 DiseaseOrPhenotypicFeature denotes Foot process fusion
T30 936-964 DiseaseOrPhenotypicFeature denotes severe and global effacement
T31 1136-1157 DiseaseOrPhenotypicFeature denotes segmentally sclerosed
T32 1224-1258 DiseaseOrPhenotypicFeature denotes Severe tubulointerstitial fibrosis
T33 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria
T34 1389-1394 SequenceVariant denotes R140Q
T35 1395-1402 GeneOrGeneProduct denotes podocin
T36 1403-1407 GeneOrGeneProduct denotes mRNA
T37 1525-1532 GeneOrGeneProduct denotes miRNA21
T38 1593-1603 GeneOrGeneProduct denotes miRNA-193a
T39 1676-1681 SequenceVariant denotes R140Q
T40 1682-1689 GeneOrGeneProduct denotes podocin
T41 1690-1695 OrganismTaxon denotes mouse
T42 1761-1766 OrganismTaxon denotes human
T43 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T44 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria
T45 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis
T46 2063-2088 DiseaseOrPhenotypicFeature denotes progressive renal failure

biored-valid-gpt-r-m

Id Subject Object Predicate Lexical cue
T1 13-18 OrganismTaxon denotes mouse
T2 28-35 GeneOrGeneProduct denotes podocin
T3 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T4 90-95 GeneOrGeneProduct denotes NPHS2
T5 111-118 GeneOrGeneProduct denotes podocin
T6 137-155 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T7 173-180 GeneOrGeneProduct denotes podocin
T8 191-196 SequenceVariant denotes R138Q
T9 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease
T10 296-300 OrganismTaxon denotes mice
T11 312-317 SequenceVariant denotes R140Q
T12 332-337 OrganismTaxon denotes mouse
T13 350-355 OrganismTaxon denotes human
T14 356-361 SequenceVariant denotes R138Q
T15 413-426 DiseaseOrPhenotypicFeature denotes renal failure
T16 474-481 GeneOrGeneProduct denotes podocin
T17 503-508 GeneOrGeneProduct denotes NPHS2
T18 509-516 SequenceVariant denotes R140Q/-
T19 526-535 ChemicalEntity denotes tamoxifen
T20 546-561 GeneOrGeneProduct denotes Cre recombinase
T21 658-663 SequenceVariant denotes R140Q
T22 709-720 DiseaseOrPhenotypicFeature denotes proteinuria
T23 799-812 DiseaseOrPhenotypicFeature denotes renal failure
T24 871-890 DiseaseOrPhenotypicFeature denotes Foot process fusion
T25 954-964 DiseaseOrPhenotypicFeature denotes effacement
T26 1136-1167 DiseaseOrPhenotypicFeature denotes segmentally sclerosed glomeruli
T27 1231-1258 DiseaseOrPhenotypicFeature denotes tubulointerstitial fibrosis
T28 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria
T29 1389-1394 SequenceVariant denotes R140Q
T30 1395-1402 GeneOrGeneProduct denotes podocin
T31 1525-1532 GeneOrGeneProduct denotes miRNA21
T32 1593-1603 GeneOrGeneProduct denotes miRNA-193a
T33 1676-1681 SequenceVariant denotes R140Q
T34 1682-1689 GeneOrGeneProduct denotes podocin
T35 1690-1695 OrganismTaxon denotes mouse
T36 1761-1766 OrganismTaxon denotes human
T37 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T38 1849-1854 OrganismTaxon denotes human
T39 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria
T40 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis
T41 2075-2088 DiseaseOrPhenotypicFeature denotes renal failure

biored-valid-gemini-r-m

Id Subject Object Predicate Lexical cue
T1 13-18 OrganismTaxon denotes mouse
T2 28-35 GeneOrGeneProduct denotes podocin
T3 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T4 90-95 GeneOrGeneProduct denotes NPHS2
T5 111-118 GeneOrGeneProduct denotes podocin
T6 126-155 DiseaseOrPhenotypicFeature denotes hereditary nephrotic syndrome
T7 173-180 GeneOrGeneProduct denotes podocin
T8 191-196 SequenceVariant denotes R138Q
T9 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease
T10 296-300 OrganismTaxon denotes mice
T11 312-317 SequenceVariant denotes R140Q
T12 332-337 OrganismTaxon denotes mouse
T13 350-355 OrganismTaxon denotes human
T14 356-361 SequenceVariant denotes R138Q
T15 368-388 DiseaseOrPhenotypicFeature denotes developmental arrest
T16 406-426 DiseaseOrPhenotypicFeature denotes lethal renal failure
T17 474-481 GeneOrGeneProduct denotes podocin
T18 503-508 GeneOrGeneProduct denotes NPHS2
T19 509-514 SequenceVariant denotes R140Q
T20 526-535 ChemicalEntity denotes tamoxifen
T21 546-561 GeneOrGeneProduct denotes Cre recombinase
T22 658-663 SequenceVariant denotes R140Q
T23 691-698 OrganismTaxon denotes animals
T24 709-720 DiseaseOrPhenotypicFeature denotes proteinuria
T25 787-812 DiseaseOrPhenotypicFeature denotes progressive renal failure
T26 871-890 DiseaseOrPhenotypicFeature denotes Foot process fusion
T27 954-964 DiseaseOrPhenotypicFeature denotes effacement
T28 1082-1090 OrganismTaxon denotes controls
T29 1136-1167 DiseaseOrPhenotypicFeature denotes segmentally sclerosed glomeruli
T30 1231-1258 DiseaseOrPhenotypicFeature denotes tubulointerstitial fibrosis
T31 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria
T32 1389-1394 SequenceVariant denotes R140Q
T33 1395-1407 GeneOrGeneProduct denotes podocin mRNA
T34 1525-1532 GeneOrGeneProduct denotes miRNA21
T35 1593-1603 GeneOrGeneProduct denotes miRNA-193a
T36 1690-1695 OrganismTaxon denotes mouse
T37 1761-1766 OrganismTaxon denotes human
T38 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T39 2027-2038 DiseaseOrPhenotypicFeature denotes proteinuria
T40 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis
T41 2063-2088 DiseaseOrPhenotypicFeature denotes progressive renal failure

biored-valid-deepseek-r-m

Id Subject Object Predicate Lexical cue
T1 13-18 OrganismTaxon denotes mouse
T2 28-35 GeneOrGeneProduct denotes podocin
T3 53-71 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T4 90-95 GeneOrGeneProduct denotes NPHS2
T5 111-118 GeneOrGeneProduct denotes podocin
T6 191-196 SequenceVariant denotes R138Q
T7 262-285 DiseaseOrPhenotypicFeature denotes end-stage renal disease
T8 296-300 OrganismTaxon denotes mice
T9 312-317 SequenceVariant denotes R140Q
T10 332-337 OrganismTaxon denotes mouse
T11 350-355 OrganismTaxon denotes human
T12 368-388 DiseaseOrPhenotypicFeature denotes developmental arrest
T13 413-426 DiseaseOrPhenotypicFeature denotes renal failure
T14 474-481 GeneOrGeneProduct denotes podocin
T15 503-508 GeneOrGeneProduct denotes NPHS2
T16 509-514 SequenceVariant denotes R140Q
T17 526-535 ChemicalEntity denotes tamoxifen
T18 546-561 GeneOrGeneProduct denotes Cre recombinase
T19 658-663 SequenceVariant denotes R140Q
T20 709-720 DiseaseOrPhenotypicFeature denotes proteinuria
T21 799-812 DiseaseOrPhenotypicFeature denotes renal failure
T22 1136-1167 DiseaseOrPhenotypicFeature denotes segmentally sclerosed glomeruli
T23 1231-1258 DiseaseOrPhenotypicFeature denotes tubulointerstitial fibrosis
T24 1346-1357 DiseaseOrPhenotypicFeature denotes proteinuria
T25 1525-1532 GeneOrGeneProduct denotes miRNA21
T26 1593-1603 GeneOrGeneProduct denotes miRNA-193a
T27 1761-1766 OrganismTaxon denotes human
T28 1767-1785 DiseaseOrPhenotypicFeature denotes nephrotic syndrome
T29 2040-2058 DiseaseOrPhenotypicFeature denotes glomerulosclerosis