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PubMed:28398555 JSONTXT

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LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
12662 47-58 GeneOrGeneProduct denotes hippocalcin NCBIGene:3208
12663 83-88 OrganismTaxon denotes human NCBITaxon:9606
12664 89-97 DiseaseOrPhenotypicFeature denotes dystonia MESH:D004421
12665 99-107 DiseaseOrPhenotypicFeature denotes Dystonia MESH:D004421
12666 113-143 DiseaseOrPhenotypicFeature denotes neurological movement disorder MESH:D009069
12667 326-330 SequenceVariant denotes T71N DBSNP:rs775863165
12668 335-340 SequenceVariant denotes A190T DBSNP:rs550921485
12669 348-371 GeneOrGeneProduct denotes neuronal calcium sensor NCBIGene:3208
12670 373-376 GeneOrGeneProduct denotes NCS NCBIGene:3208
12671 378-389 GeneOrGeneProduct denotes hippocalcin NCBIGene:3208
12672 430-455 DiseaseOrPhenotypicFeature denotes primary isolated dystonia MESH:D004421
12673 457-461 GeneOrGeneProduct denotes DYT2 NCBIGene:3208
12674 462-470 DiseaseOrPhenotypicFeature denotes dystonia MESH:D004421
12675 541-552 GeneOrGeneProduct denotes hippocalcin NCBIGene:3208
12676 639-650 GeneOrGeneProduct denotes hippocalcin NCBIGene:3208
12677 669-676 ChemicalEntity denotes calcium MESH:D002118
12678 707-737 GeneOrGeneProduct denotes voltage-gated calcium channels NCBIGene:783
12679 749-753 SequenceVariant denotes T71N DBSNP:rs775863165
12680 758-763 SequenceVariant denotes A190T DBSNP:rs550921485
12681 767-778 GeneOrGeneProduct denotes hippocalcin NCBIGene:3208
12682 805-812 ChemicalEntity denotes calcium MESH:D002118
12683 870-874 ChemicalEntity denotes Ca2+ MESH:D000069285
12684 937-948 GeneOrGeneProduct denotes hippocalcin NCBIGene:3208
12685 974-977 GeneOrGeneProduct denotes NCS NCBIGene:3208
12686 1324-1331 ChemicalEntity denotes calcium MESH:D002118
12687 1342-1345 ChemicalEntity denotes KCl MESH:D011189
12688 1383-1394 GeneOrGeneProduct denotes hippocalcin NCBIGene:3208
12689 1413-1450 GeneOrGeneProduct denotes N-type voltage-gated calcium channels NCBIGene:774
12690 1482-1490 DiseaseOrPhenotypicFeature denotes dystonia MESH:D004421
12691 1525-1536 GeneOrGeneProduct denotes hippocalcin NCBIGene:3208
12692 1599-1606 ChemicalEntity denotes calcium MESH:D002118
12693 1621-1625 GeneOrGeneProduct denotes DYT2 NCBIGene:3208
12694 1626-1634 DiseaseOrPhenotypicFeature denotes dystonia MESH:D004421

LitCoin-entities-OrganismTaxon-PD

Id Subject Object Predicate Lexical cue db_id
T1 83-88 OrganismTaxon denotes human NCBItxid:9606

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T2 99-240 Sentence denotes Dystonia is a neurological movement disorder that forces the body into twisting, repetitive movements or sometimes painful abnormal postures.
T1 0-98 Sentence denotes Biophysical and functional characterization of hippocalcin mutants responsible for human dystonia.
T3 241-472 Sentence denotes With the advent of next-generation sequencing technologies, the homozygous mutations T71N and A190T in the neuronal calcium sensor (NCS) hippocalcin were identified as the genetic cause of primary isolated dystonia (DYT2 dystonia).
T4 473-581 Sentence denotes However, the effect of these mutations on the physiological role of hippocalcin has not yet been elucidated.
T5 582-738 Sentence denotes Using a multidisciplinary approach, we demonstrated that hippocalcin oligomerises in a calcium-dependent manner and binds to voltage-gated calcium channels.
T6 739-893 Sentence denotes Mutations T71N and A190T in hippocalcin did not affect stability, calcium-binding affinity or translocation to cellular membranes (Ca2+/myristoyl switch).
T7 894-1132 Sentence denotes We obtained the first crystal structure of hippocalcin and alignment with other NCS proteins showed significant variability in the orientation of the C-terminal part of the molecule, the region expected to be important for target binding.
T8 1133-1285 Sentence denotes We demonstrated that the disease-causing mutations did not affect the structure of the protein, however both mutants showed a defect in oligomerisation.
T9 1286-1451 Sentence denotes In addition, we observed an increased calcium influx in KCl-depolarised cells expressing mutated hippocalcin, mostly driven by N-type voltage-gated calcium channels.
T10 1452-1635 Sentence denotes Our data demonstrate that the dystonia-causing mutations strongly affect hippocalcin cellular functions which suggest a central role for perturbed calcium signalling in DYT2 dystonia.

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 126-143 DiseaseOrPhenotypicFeature denotes movement disorder 0005395
T2 348-356 DiseaseOrPhenotypicFeature denotes neuronal 0004466
T3 438-455 DiseaseOrPhenotypicFeature denotes isolated dystonia 0015494

LitCoin-SeqVar

Id Subject Object Predicate Lexical cue
T1 326-330 SequenceVariant denotes T71N
T2 335-340 SequenceVariant denotes A190T
T3 749-753 SequenceVariant denotes T71N
T4 758-763 SequenceVariant denotes A190T

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T1 47-58 GeneOrGeneProduct denotes hippocalcin
T2 59-66 GeneOrGeneProduct denotes mutants
T3 149-155 GeneOrGeneProduct denotes forces
T4 170-178 GeneOrGeneProduct denotes twisting
T5 214-221 GeneOrGeneProduct denotes painful
T6 316-325 GeneOrGeneProduct denotes mutations
T7 348-371 GeneOrGeneProduct denotes neuronal calcium sensor
T8 373-376 GeneOrGeneProduct denotes NCS
T9 378-389 GeneOrGeneProduct denotes hippocalcin
T10 457-461 GeneOrGeneProduct denotes DYT2
T11 502-511 GeneOrGeneProduct denotes mutations
T12 541-552 GeneOrGeneProduct denotes hippocalcin
T13 639-650 GeneOrGeneProduct denotes hippocalcin
T14 664-668 GeneOrGeneProduct denotes in a
T15 698-703 GeneOrGeneProduct denotes binds
T16 707-737 GeneOrGeneProduct denotes voltage-gated calcium channels
T17 739-748 GeneOrGeneProduct denotes Mutations
T18 767-778 GeneOrGeneProduct denotes hippocalcin
T19 805-820 GeneOrGeneProduct denotes calcium-binding
T20 833-846 GeneOrGeneProduct denotes translocation
T21 870-873 GeneOrGeneProduct denotes Ca2
T22 885-891 GeneOrGeneProduct denotes switch
T23 937-948 GeneOrGeneProduct denotes hippocalcin
T24 968-973 GeneOrGeneProduct denotes other
T25 974-977 GeneOrGeneProduct denotes NCS
T26 978-986 GeneOrGeneProduct denotes proteins
T27 1044-1054 GeneOrGeneProduct denotes C-terminal
T28 1055-1059 GeneOrGeneProduct denotes part
T29 1124-1131 GeneOrGeneProduct denotes binding
T30 1174-1183 GeneOrGeneProduct denotes mutations
T31 1220-1227 GeneOrGeneProduct denotes protein
T32 1242-1249 GeneOrGeneProduct denotes mutants
T33 1259-1265 GeneOrGeneProduct denotes defect
T34 1358-1363 GeneOrGeneProduct denotes cells
T35 1375-1382 GeneOrGeneProduct denotes mutated
T36 1383-1394 GeneOrGeneProduct denotes hippocalcin
T37 1420-1450 GeneOrGeneProduct denotes voltage-gated calcium channels
T38 1499-1508 GeneOrGeneProduct denotes mutations
T39 1525-1536 GeneOrGeneProduct denotes hippocalcin
T40 1621-1625 GeneOrGeneProduct denotes DYT2

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T1 47-58 GeneOrGeneProduct denotes hippocalcin
T2 348-371 GeneOrGeneProduct denotes neuronal calcium sensor
T3 373-376 GeneOrGeneProduct denotes NCS
T4 378-389 GeneOrGeneProduct denotes hippocalcin
T5 457-461 GeneOrGeneProduct denotes DYT2
T6 541-552 GeneOrGeneProduct denotes hippocalcin
T7 639-650 GeneOrGeneProduct denotes hippocalcin
T8 707-737 GeneOrGeneProduct denotes voltage-gated calcium channels
T9 767-778 GeneOrGeneProduct denotes hippocalcin
T10 805-820 GeneOrGeneProduct denotes calcium-binding
T11 833-846 GeneOrGeneProduct denotes translocation
T12 885-891 GeneOrGeneProduct denotes switch
T13 937-948 GeneOrGeneProduct denotes hippocalcin
T14 968-973 GeneOrGeneProduct denotes other
T15 974-977 GeneOrGeneProduct denotes NCS
T16 1044-1054 GeneOrGeneProduct denotes C-terminal
T17 1124-1131 GeneOrGeneProduct denotes binding
T18 1220-1227 GeneOrGeneProduct denotes protein
T19 1383-1394 GeneOrGeneProduct denotes hippocalcin
T20 1420-1450 GeneOrGeneProduct denotes voltage-gated calcium channels
T21 1525-1536 GeneOrGeneProduct denotes hippocalcin
T22 1621-1625 GeneOrGeneProduct denotes DYT2

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T1 89-97 DiseaseOrPhenotypicFeature denotes dystonia D004421
T2 99-107 DiseaseOrPhenotypicFeature denotes Dystonia D004421
T3 126-143 DiseaseOrPhenotypicFeature denotes movement disorder D009069
T4 447-455 DiseaseOrPhenotypicFeature denotes dystonia D004421
T5 462-470 DiseaseOrPhenotypicFeature denotes dystonia D004421
T6 1158-1165 DiseaseOrPhenotypicFeature denotes disease D004194
T7 1482-1490 DiseaseOrPhenotypicFeature denotes dystonia D004421
T8 1626-1634 DiseaseOrPhenotypicFeature denotes dystonia D004421

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T1 47-58 GeneOrGeneProduct denotes hippocalcin
T2 348-371 GeneOrGeneProduct denotes neuronal calcium sensor
T3 373-376 GeneOrGeneProduct denotes NCS
T4 378-389 GeneOrGeneProduct denotes hippocalcin
T5 457-461 GeneOrGeneProduct denotes DYT2
T6 541-552 GeneOrGeneProduct denotes hippocalcin
T7 639-650 GeneOrGeneProduct denotes hippocalcin
T8 707-737 GeneOrGeneProduct denotes voltage-gated calcium channels
T9 767-778 GeneOrGeneProduct denotes hippocalcin
T10 937-948 GeneOrGeneProduct denotes hippocalcin
T11 974-977 GeneOrGeneProduct denotes NCS
T12 1383-1394 GeneOrGeneProduct denotes hippocalcin
T13 1420-1450 GeneOrGeneProduct denotes voltage-gated calcium channels
T14 1525-1536 GeneOrGeneProduct denotes hippocalcin
T15 1621-1625 GeneOrGeneProduct denotes DYT2

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T1 89-97 DiseaseOrPhenotypicFeature denotes dystonia 0003441
T2 99-107 DiseaseOrPhenotypicFeature denotes Dystonia 0003441
T3 126-143 DiseaseOrPhenotypicFeature denotes movement disorder 0005395
T4 438-455 DiseaseOrPhenotypicFeature denotes isolated dystonia 0015494
T5 457-461 DiseaseOrPhenotypicFeature denotes DYT2 0009141
T6 462-470 DiseaseOrPhenotypicFeature denotes dystonia 0003441
T7 1259-1265 DiseaseOrPhenotypicFeature denotes defect 0008568
T8 1482-1490 DiseaseOrPhenotypicFeature denotes dystonia 0003441
T9 1621-1625 DiseaseOrPhenotypicFeature denotes DYT2 0009141
T10 1626-1634 DiseaseOrPhenotypicFeature denotes dystonia 0003441

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T1 89-97 DiseaseOrPhenotypicFeature denotes dystonia D004421
T2 99-107 DiseaseOrPhenotypicFeature denotes Dystonia D004421
T3 126-143 DiseaseOrPhenotypicFeature denotes movement disorder D009069
T4 447-455 DiseaseOrPhenotypicFeature denotes dystonia D004421
T5 462-470 DiseaseOrPhenotypicFeature denotes dystonia D004421
T6 1158-1165 DiseaseOrPhenotypicFeature denotes disease D004194
T7 1482-1490 DiseaseOrPhenotypicFeature denotes dystonia D004421
T8 1626-1634 DiseaseOrPhenotypicFeature denotes dystonia D004421

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T1 89-97 DiseaseOrPhenotypicFeature denotes dystonia D004421
T2 99-107 DiseaseOrPhenotypicFeature denotes Dystonia D004421
T3 126-143 DiseaseOrPhenotypicFeature denotes movement disorder D009069
T4 447-455 DiseaseOrPhenotypicFeature denotes dystonia D004421
T5 462-470 DiseaseOrPhenotypicFeature denotes dystonia D004421
T6 1482-1490 DiseaseOrPhenotypicFeature denotes dystonia D004421
T7 1626-1634 DiseaseOrPhenotypicFeature denotes dystonia D004421

LitCoin-Chemical-MeSH-CHEBI

Id Subject Object Predicate Lexical cue ID:
T1 357-364 ChemicalEntity denotes calcium D002118|http://purl.obolibrary.org/obo/CHEBI_29320|http://purl.obolibrary.org/obo/CHEBI_22984
T4 373-376 ChemicalEntity denotes NCS http://purl.obolibrary.org/obo/CHEBI_53203
T5 669-676 ChemicalEntity denotes calcium D002118|http://purl.obolibrary.org/obo/CHEBI_29320|http://purl.obolibrary.org/obo/CHEBI_22984
T8 721-728 ChemicalEntity denotes calcium D002118|http://purl.obolibrary.org/obo/CHEBI_29320|http://purl.obolibrary.org/obo/CHEBI_22984
T11 805-812 ChemicalEntity denotes calcium D002118|http://purl.obolibrary.org/obo/CHEBI_29320|http://purl.obolibrary.org/obo/CHEBI_22984
T14 875-884 ChemicalEntity denotes myristoyl http://purl.obolibrary.org/obo/CHEBI_25456
T15 974-977 ChemicalEntity denotes NCS http://purl.obolibrary.org/obo/CHEBI_53203
T16 1324-1331 ChemicalEntity denotes calcium D002118|http://purl.obolibrary.org/obo/CHEBI_29320|http://purl.obolibrary.org/obo/CHEBI_22984
T19 1342-1345 ChemicalEntity denotes KCl http://purl.obolibrary.org/obo/CHEBI_32588
T20 1434-1441 ChemicalEntity denotes calcium D002118|http://purl.obolibrary.org/obo/CHEBI_29320|http://purl.obolibrary.org/obo/CHEBI_22984
T23 1599-1606 ChemicalEntity denotes calcium D002118|http://purl.obolibrary.org/obo/CHEBI_29320|http://purl.obolibrary.org/obo/CHEBI_22984

LitCoin-NCBITaxon-2

Id Subject Object Predicate Lexical cue
T1 83-88 OrganismTaxon denotes human

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label ID:
T23 1599-1606 ChemicalEntity denotes calcium http://purl.obolibrary.org/obo/CHEBI_22984|http://purl.obolibrary.org/obo/CHEBI_29320|D002118
T20 1434-1441 ChemicalEntity denotes calcium http://purl.obolibrary.org/obo/CHEBI_22984|http://purl.obolibrary.org/obo/CHEBI_29320|D002118
T19 1342-1345 ChemicalEntity denotes KCl http://purl.obolibrary.org/obo/CHEBI_32588
T16 1324-1331 ChemicalEntity denotes calcium http://purl.obolibrary.org/obo/CHEBI_22984|http://purl.obolibrary.org/obo/CHEBI_29320|D002118
T15 974-977 ChemicalEntity denotes NCS http://purl.obolibrary.org/obo/CHEBI_53203
T14 875-884 ChemicalEntity denotes myristoyl http://purl.obolibrary.org/obo/CHEBI_25456
T11 805-812 ChemicalEntity denotes calcium http://purl.obolibrary.org/obo/CHEBI_22984|http://purl.obolibrary.org/obo/CHEBI_29320|D002118
T8 721-728 ChemicalEntity denotes calcium http://purl.obolibrary.org/obo/CHEBI_22984|http://purl.obolibrary.org/obo/CHEBI_29320|D002118
T5 669-676 ChemicalEntity denotes calcium http://purl.obolibrary.org/obo/CHEBI_22984|http://purl.obolibrary.org/obo/CHEBI_29320|D002118
T4 373-376 ChemicalEntity denotes NCS http://purl.obolibrary.org/obo/CHEBI_53203
T1 357-364 ChemicalEntity denotes calcium http://purl.obolibrary.org/obo/CHEBI_22984|http://purl.obolibrary.org/obo/CHEBI_29320|D002118
T2194 1621-1625 GeneOrGeneProduct denotes DYT2
T27411 1525-1536 GeneOrGeneProduct denotes hippocalcin
T13 1420-1450 GeneOrGeneProduct denotes voltage-gated calcium channels
T12 1383-1394 GeneOrGeneProduct denotes hippocalcin
T74980 974-977 GeneOrGeneProduct denotes NCS
T10 937-948 GeneOrGeneProduct denotes hippocalcin
T9 767-778 GeneOrGeneProduct denotes hippocalcin
T28299 707-737 GeneOrGeneProduct denotes voltage-gated calcium channels
T7 639-650 GeneOrGeneProduct denotes hippocalcin
T6 541-552 GeneOrGeneProduct denotes hippocalcin
T41634 457-461 GeneOrGeneProduct denotes DYT2
T33976 378-389 GeneOrGeneProduct denotes hippocalcin
T3 373-376 GeneOrGeneProduct denotes NCS
T2 348-371 GeneOrGeneProduct denotes neuronal calcium sensor
T98032 47-58 GeneOrGeneProduct denotes hippocalcin
T76179 1626-1634 DiseaseOrPhenotypicFeature denotes dystonia D004421
T78573 1482-1490 DiseaseOrPhenotypicFeature denotes dystonia D004421
T19724 462-470 DiseaseOrPhenotypicFeature denotes dystonia D004421
T89605 447-455 DiseaseOrPhenotypicFeature denotes dystonia D004421
T82986 126-143 DiseaseOrPhenotypicFeature denotes movement disorder D009069
T32476 99-107 DiseaseOrPhenotypicFeature denotes Dystonia D004421
T11177 89-97 DiseaseOrPhenotypicFeature denotes dystonia D004421
T7056 83-88 OrganismTaxon denotes human
T26514 758-763 SequenceVariant denotes A190T
T22121 749-753 SequenceVariant denotes T71N
T91846 335-340 SequenceVariant denotes A190T
T86809 326-330 SequenceVariant denotes T71N