PubMed:28091941
Annnotations
GlyCosmos6-Glycan-Motif-Image
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 272-279 | Glycan_Motif | denotes | Lewis-a | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G39023AU|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00047MO |
| T3 | 576-583 | Glycan_Motif | denotes | mannose | https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G70323CJ |
Glycosmos6-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 272-279 | http://www.glycoepitope.jp/epitopes/EP0007 | denotes | Lewis-a |
GlyCosmos6-Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 272-279 | https://glytoucan.org/Structures/Glycans/G00047MO | denotes | Lewis-a |
| T2 | 272-279 | https://glytoucan.org/Structures/Glycans/G39023AU | denotes | Lewis-a |
| T3 | 576-583 | https://glytoucan.org/Structures/Glycans/G70323CJ | denotes | mannose |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-134 | Sentence | denotes | Occurrence of complex type free N-glycans with a single GlcNAc residue at the reducing termini in the fresh-water plant, Egeria densa. |
| TextSentencer_T2 | 135-353 | Sentence | denotes | In our previous study, we found unique free N-glycans (FNGs), which carry a single GlcNAc residue (GN1) at the reducing-end side and the Lewis-a epitope at the non-reducing-end side, in the culture broth of rice cells. |
| TextSentencer_T3 | 354-793 | Sentence | denotes | Based on the FNG structural features and the substrate specificity of plant ENGase, we hypothesized that there might be a novel biosynthetic mechanism responsible for the production of these unique GN1-FNGs, in which high-mannose type (HMT)-GN1-FNGs produced in the cytosol from misfolded glycoproteins by ENGase are transported back into the endoplasmic reticulum and processed to plant complex type (PCT)-GN1-FNGs in the Golgi apparatus. |
| TextSentencer_T4 | 794-1016 | Sentence | denotes | Until now, however, PCT-GN1-FNGs had only been found in the culture broth of rice cultured cells and never in plants, suggesting that the formation of PCT-GN1-FNGs might be generated under special or artificial conditions. |
| TextSentencer_T5 | 1017-1141 | Sentence | denotes | In this study, we confirm the presence of PCT-GN1-FNGs, HMT-GN1-FNGs and PCT-GN2-FNGs in the fresh-water plant Egeria densa. |
| TextSentencer_T6 | 1142-1262 | Sentence | denotes | These results suggest that a mechanism responsible for the production of PCT-GN1-FNG is present in native plant tissues. |
| T1 | 0-134 | Sentence | denotes | Occurrence of complex type free N-glycans with a single GlcNAc residue at the reducing termini in the fresh-water plant, Egeria densa. |
| T2 | 135-353 | Sentence | denotes | In our previous study, we found unique free N-glycans (FNGs), which carry a single GlcNAc residue (GN1) at the reducing-end side and the Lewis-a epitope at the non-reducing-end side, in the culture broth of rice cells. |
| T3 | 354-793 | Sentence | denotes | Based on the FNG structural features and the substrate specificity of plant ENGase, we hypothesized that there might be a novel biosynthetic mechanism responsible for the production of these unique GN1-FNGs, in which high-mannose type (HMT)-GN1-FNGs produced in the cytosol from misfolded glycoproteins by ENGase are transported back into the endoplasmic reticulum and processed to plant complex type (PCT)-GN1-FNGs in the Golgi apparatus. |
| T4 | 794-1016 | Sentence | denotes | Until now, however, PCT-GN1-FNGs had only been found in the culture broth of rice cultured cells and never in plants, suggesting that the formation of PCT-GN1-FNGs might be generated under special or artificial conditions. |
| T5 | 1017-1141 | Sentence | denotes | In this study, we confirm the presence of PCT-GN1-FNGs, HMT-GN1-FNGs and PCT-GN2-FNGs in the fresh-water plant Egeria densa. |
| T6 | 1142-1262 | Sentence | denotes | These results suggest that a mechanism responsible for the production of PCT-GN1-FNG is present in native plant tissues. |
NGLY1-deficiency
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| PD-NGLY1-deficiency-B_T1 | 56-62 | chem:24139 | denotes | GlcNAc |
| PD-NGLY1-deficiency-B_T2 | 218-224 | chem:24139 | denotes | GlcNAc |
| PD-NGLY1-deficiency-B_T3 | 430-436 | hgnc:24622 | denotes | ENGase |
| PD-NGLY1-deficiency-B_T4 | 660-666 | hgnc:24622 | denotes | ENGase |
mondo_disease
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 756-759 | Disease | denotes | PCT | http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104 |
| T3 | 814-817 | Disease | denotes | PCT | http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104 |
| T5 | 945-948 | Disease | denotes | PCT | http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104 |
| T7 | 1059-1062 | Disease | denotes | PCT | http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104 |
| T9 | 1090-1093 | Disease | denotes | PCT | http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104 |
| T11 | 1215-1218 | Disease | denotes | PCT | http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104 |
Glycan-GlyCosmos
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 272-279 | Glycan | denotes | Lewis-a | https://api.glycosmos.org/wurcs2image/latest/png/binary/G39023AU |
GlyCosmos15-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 756-759 | Disease | denotes | PCT | http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104 |
| T3 | 814-817 | Disease | denotes | PCT | http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104 |
| T5 | 945-948 | Disease | denotes | PCT | http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104 |
| T7 | 1059-1062 | Disease | denotes | PCT | http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104 |
| T9 | 1090-1093 | Disease | denotes | PCT | http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104 |
| T11 | 1215-1218 | Disease | denotes | PCT | http://purl.obolibrary.org/obo/MONDO_0008296|http://purl.obolibrary.org/obo/MONDO_0015104 |
GlyCosmos15-NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 121-133 | OrganismTaxon | denotes | Egeria densa | 55453 |
| T2 | 342-346 | OrganismTaxon | denotes | rice | 4530 |
| T3 | 871-875 | OrganismTaxon | denotes | rice | 4530 |
| T4 | 1128-1140 | OrganismTaxon | denotes | Egeria densa | 55453 |
GlyCosmos15-CL
| Id | Subject | Object | Predicate | Lexical cue | cl_id |
|---|---|---|---|---|---|
| T1 | 876-890 | Cell | denotes | cultured cells | http://purl.obolibrary.org/obo/CL:0000010 |
GlyCosmos15-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 620-627 | Body_part | denotes | cytosol | http://purl.obolibrary.org/obo/GO_0005829 |
| T2 | 683-687 | Body_part | denotes | back | http://purl.obolibrary.org/obo/UBERON_0001137 |
| T3 | 709-718 | Body_part | denotes | reticulum | http://purl.obolibrary.org/obo/UBERON_0007361 |
| T4 | 777-792 | Body_part | denotes | Golgi apparatus | http://purl.obolibrary.org/obo/GO_0005794 |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| TextSentencer_T1 | 0-134 | Sentence | denotes | Occurrence of complex type free N-glycans with a single GlcNAc residue at the reducing termini in the fresh-water plant, Egeria densa. |
| TextSentencer_T2 | 135-353 | Sentence | denotes | In our previous study, we found unique free N-glycans (FNGs), which carry a single GlcNAc residue (GN1) at the reducing-end side and the Lewis-a epitope at the non-reducing-end side, in the culture broth of rice cells. |
| TextSentencer_T3 | 354-793 | Sentence | denotes | Based on the FNG structural features and the substrate specificity of plant ENGase, we hypothesized that there might be a novel biosynthetic mechanism responsible for the production of these unique GN1-FNGs, in which high-mannose type (HMT)-GN1-FNGs produced in the cytosol from misfolded glycoproteins by ENGase are transported back into the endoplasmic reticulum and processed to plant complex type (PCT)-GN1-FNGs in the Golgi apparatus. |
| TextSentencer_T4 | 794-1016 | Sentence | denotes | Until now, however, PCT-GN1-FNGs had only been found in the culture broth of rice cultured cells and never in plants, suggesting that the formation of PCT-GN1-FNGs might be generated under special or artificial conditions. |
| TextSentencer_T5 | 1017-1141 | Sentence | denotes | In this study, we confirm the presence of PCT-GN1-FNGs, HMT-GN1-FNGs and PCT-GN2-FNGs in the fresh-water plant Egeria densa. |
| TextSentencer_T6 | 1142-1262 | Sentence | denotes | These results suggest that a mechanism responsible for the production of PCT-GN1-FNG is present in native plant tissues. |
| T1 | 0-134 | Sentence | denotes | Occurrence of complex type free N-glycans with a single GlcNAc residue at the reducing termini in the fresh-water plant, Egeria densa. |
| T2 | 135-353 | Sentence | denotes | In our previous study, we found unique free N-glycans (FNGs), which carry a single GlcNAc residue (GN1) at the reducing-end side and the Lewis-a epitope at the non-reducing-end side, in the culture broth of rice cells. |
| T3 | 354-793 | Sentence | denotes | Based on the FNG structural features and the substrate specificity of plant ENGase, we hypothesized that there might be a novel biosynthetic mechanism responsible for the production of these unique GN1-FNGs, in which high-mannose type (HMT)-GN1-FNGs produced in the cytosol from misfolded glycoproteins by ENGase are transported back into the endoplasmic reticulum and processed to plant complex type (PCT)-GN1-FNGs in the Golgi apparatus. |
| T4 | 794-1016 | Sentence | denotes | Until now, however, PCT-GN1-FNGs had only been found in the culture broth of rice cultured cells and never in plants, suggesting that the formation of PCT-GN1-FNGs might be generated under special or artificial conditions. |
| T5 | 1017-1141 | Sentence | denotes | In this study, we confirm the presence of PCT-GN1-FNGs, HMT-GN1-FNGs and PCT-GN2-FNGs in the fresh-water plant Egeria densa. |
| T6 | 1142-1262 | Sentence | denotes | These results suggest that a mechanism responsible for the production of PCT-GN1-FNG is present in native plant tissues. |
GlyCosmos15-Sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-134 | Sentence | denotes | Occurrence of complex type free N-glycans with a single GlcNAc residue at the reducing termini in the fresh-water plant, Egeria densa. |
| T2 | 135-353 | Sentence | denotes | In our previous study, we found unique free N-glycans (FNGs), which carry a single GlcNAc residue (GN1) at the reducing-end side and the Lewis-a epitope at the non-reducing-end side, in the culture broth of rice cells. |
| T3 | 354-793 | Sentence | denotes | Based on the FNG structural features and the substrate specificity of plant ENGase, we hypothesized that there might be a novel biosynthetic mechanism responsible for the production of these unique GN1-FNGs, in which high-mannose type (HMT)-GN1-FNGs produced in the cytosol from misfolded glycoproteins by ENGase are transported back into the endoplasmic reticulum and processed to plant complex type (PCT)-GN1-FNGs in the Golgi apparatus. |
| T4 | 794-1016 | Sentence | denotes | Until now, however, PCT-GN1-FNGs had only been found in the culture broth of rice cultured cells and never in plants, suggesting that the formation of PCT-GN1-FNGs might be generated under special or artificial conditions. |
| T5 | 1017-1141 | Sentence | denotes | In this study, we confirm the presence of PCT-GN1-FNGs, HMT-GN1-FNGs and PCT-GN2-FNGs in the fresh-water plant Egeria densa. |
| T6 | 1142-1262 | Sentence | denotes | These results suggest that a mechanism responsible for the production of PCT-GN1-FNG is present in native plant tissues. |
GlyCosmos15-Glycan
| Id | Subject | Object | Predicate | Lexical cue | image |
|---|---|---|---|---|---|
| T1 | 272-279 | Glycan | denotes | Lewis-a | https://api.glycosmos.org/wurcs2image/latest/png/binary/G39023AU |
GlyCosmos15-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 272-279 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | Lewis-a | http://www.glycoepitope.jp/epitopes/EP0007 |
NCBITAXON
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 121-133 | OrganismTaxon | denotes | Egeria densa | 55453 |
| T2 | 342-346 | OrganismTaxon | denotes | rice | 4530 |
| T3 | 871-875 | OrganismTaxon | denotes | rice | 4530 |
| T4 | 1128-1140 | OrganismTaxon | denotes | Egeria densa | 55453 |
GlyCosmos-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glycoepitope_id |
|---|---|---|---|---|---|
| T1 | 272-279 | http://purl.jp/bio/12/glyco/glycan#Glycan_epitope | denotes | Lewis-a | http://www.glycoepitope.jp/epitopes/EP0007 |
Anatomy-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 620-627 | Body_part | denotes | cytosol | http://purl.obolibrary.org/obo/GO_0005829 |
| T2 | 683-687 | Body_part | denotes | back | http://purl.obolibrary.org/obo/UBERON_0001137 |
| T3 | 709-718 | Body_part | denotes | reticulum | http://purl.obolibrary.org/obo/UBERON_0007361 |
| T4 | 777-792 | Body_part | denotes | Golgi apparatus | http://purl.obolibrary.org/obo/GO_0005794 |
CL-cell
| Id | Subject | Object | Predicate | Lexical cue | cl_id |
|---|---|---|---|---|---|
| T1 | 876-890 | Cell | denotes | cultured cells | http://purl.obolibrary.org/obo/CL:0000010 |