PubMed:27509880
Annnotations
LitCoin-entities
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 11480 | 19-38 | GeneOrGeneProduct | denotes | histone deacetylase | NCBIGene:3065 |
| 11481 | 49-61 | ChemicalEntity | denotes | depsipeptide | MESH:D047630 |
| 11482 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil | MESH:D005472 |
| 11483 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II | NCBIGene:3119 |
| 11484 | 139-142 | GeneOrGeneProduct | denotes | p21 | NCBIGene:1026 |
| 11485 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 | NCBIGene:836|NCBIGene:840 |
| 11486 | 178-183 | OrganismTaxon | denotes | human | NCBITaxon:9606 |
| 11487 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer | MESH:D003110 |
| 11488 | 197-204 | CellLine | denotes | HCT-116 | NCBITaxon:9606 |
| 11489 | 248-267 | GeneOrGeneProduct | denotes | histone deacetylase | NCBIGene:3065 |
| 11490 | 269-273 | GeneOrGeneProduct | denotes | HDAC | NCBIGene:3065 |
| 11491 | 437-449 | ChemicalEntity | denotes | depsipeptide | MESH:D047630 |
| 11492 | 454-458 | GeneOrGeneProduct | denotes | HDAC | NCBIGene:3065 |
| 11493 | 508-522 | ChemicalEntity | denotes | 5-fluorouracil | MESH:D005472 |
| 11494 | 524-528 | ChemicalEntity | denotes | 5-FU | MESH:D005472 |
| 11495 | 535-540 | OrganismTaxon | denotes | human | NCBITaxon:9606 |
| 11496 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer | MESH:D003110 |
| 11497 | 571-578 | CellLine | denotes | HCT-116 | NCBITaxon:9606 |
| 11498 | 580-584 | CellLine | denotes | HT29 | NCBITaxon:9606 |
| 11499 | 590-594 | CellLine | denotes | SW48 | NCBITaxon:9606 |
| 11500 | 700-704 | ChemicalEntity | denotes | 5-FU | MESH:D005472 |
| 11501 | 724-736 | ChemicalEntity | denotes | depsipeptide | MESH:D047630 |
| 11502 | 802-813 | GeneOrGeneProduct | denotes | caspase-3/7 | NCBIGene:836|NCBIGene:840 |
| 11503 | 821-825 | ChemicalEntity | denotes | 5-FU | MESH:D005472 |
| 11504 | 851-862 | GeneOrGeneProduct | denotes | caspase-3/7 | NCBIGene:836|NCBIGene:840 |
| 11505 | 939-943 | ChemicalEntity | denotes | 5-FU | MESH:D005472 |
| 11506 | 947-959 | ChemicalEntity | denotes | depsipeptide | MESH:D047630 |
| 11507 | 996-1000 | ChemicalEntity | denotes | 5-FU | MESH:D005472 |
| 11508 | 1005-1017 | ChemicalEntity | denotes | depsipeptide | MESH:D047630 |
| 11509 | 1139-1150 | GeneOrGeneProduct | denotes | caspase-3/7 | NCBIGene:836|NCBIGene:840 |
| 11510 | 1261-1275 | ChemicalEntity | denotes | polysaccharide | MESH:D011134 |
| 11511 | 1288-1332 | GeneOrGeneProduct | denotes | major histocompatibility complex (MHC) class | NCBIGene:3123 |
| 11512 | 1350-1369 | GeneOrGeneProduct | denotes | MHC protein complex | NCBIGene:3123 |
| 11513 | 1458-1462 | ChemicalEntity | denotes | 5-FU | MESH:D005472 |
| 11514 | 1467-1479 | ChemicalEntity | denotes | depsipeptide | MESH:D047630 |
| 11515 | 1538-1556 | GeneOrGeneProduct | denotes | MHC class II genes | NCBIGene:3119 |
| 11516 | 1569-1586 | GeneOrGeneProduct | denotes | MHC class I genes | NCBIGene:3106 |
| 11517 | 1708-1726 | GeneOrGeneProduct | denotes | MHC class II genes | NCBIGene:3119 |
| 11518 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF | NCBIGene:8850 |
| 11519 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA | NCBIGene:4261 |
| 11520 | 1804-1808 | ChemicalEntity | denotes | 5-FU | MESH:D005472 |
| 11521 | 1813-1825 | ChemicalEntity | denotes | depsipeptide | MESH:D047630 |
| 11522 | 1897-1909 | GeneOrGeneProduct | denotes | MHC class II | NCBIGene:3119 |
| 11523 | 1974-1986 | ChemicalEntity | denotes | depsipeptide | MESH:D047630 |
| 11524 | 1991-1995 | ChemicalEntity | denotes | 5-FU | MESH:D005472 |
| 11525 | 2085-2089 | ChemicalEntity | denotes | 5-FU | MESH:D005472 |
| 11526 | 2094-2106 | ChemicalEntity | denotes | depsipeptide | MESH:D047630 |
| 11527 | 2115-2120 | OrganismTaxon | denotes | human | NCBITaxon:9606 |
| 11528 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer | MESH:D003110 |
| 11529 | 2193-2205 | GeneOrGeneProduct | denotes | MHC class II | NCBIGene:3119 |
LitCoin-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-211 | Sentence | denotes | Combination of the histone deacetylase inhibitor depsipeptide and 5-fluorouracil upregulates major histocompatibility complex class II and p21 genes and activates caspase-3/7 in human colon cancer HCT-116 cells. |
| T2 | 212-372 | Sentence | denotes | Epigenetic anticancer drugs such as histone deacetylase (HDAC) inhibitors have been combined with existing anticancer drugs for synergistic or additive effects. |
| T3 | 373-670 | Sentence | denotes | In the present study, we found that a very low concentration of depsipeptide, an HDAC inhibitor, potentiated the antitumor activity of 5-fluorouracil (5-FU) in a human colon cancer cell model using HCT-116, HT29, and SW48 cells via the inhibition of colony formation ability or cellular viability. |
| T4 | 671-863 | Sentence | denotes | Exposure to a combination of 5-FU (1.75 µM) and 1 nM depsipeptide for 24 and 48 h resulted in a 3- to 4-fold increase in activated caspase-3/7, while 5-FU alone failed to activate caspase-3/7. |
| T5 | 864-1162 | Sentence | denotes | Microarray and subsequent gene ontology analyses revealed that compared to 5-FU or depsipeptide alone, the combination treatment of 5-FU and depsipeptide upregulated genes related to cell death and the apoptotic process consistent with the inhibition of colony formation and caspase-3/7 activation. |
| T6 | 1163-1383 | Sentence | denotes | These analyses indicated marked upregulation of antigen processing and presentation of peptide or polysaccharide antigen via major histocompatibility complex (MHC) class (GO:0002504) and MHC protein complex (GO:0042611). |
| T7 | 1384-1587 | Sentence | denotes | Compared with vehicle controls, the cells treated with the combination of 5-FU and depsipeptide showed marked induction (3- to 8.5-fold) of expression of MHC class II genes, but not of MHC class I genes. |
| T8 | 1588-1826 | Sentence | denotes | Furthermore, our global analysis of gene expression, which was focused on genes involved in the molecular regulation of MHC class II genes, showed enhancement of pro-apoptotic PCAF and CIITA after the combination of 5-FU and depsipeptide. |
| T9 | 1827-1996 | Sentence | denotes | These results may indicate a closer relationship between elevation of MHC class II expression and cellular apoptosis induced by the combination of depsipeptide and 5-FU. |
| T10 | 1997-2222 | Sentence | denotes | To the best of our knowledge, this is the first study to report that the combination of 5-FU and depsipeptide induces human colon cancer cell apoptosis in a concerted manner with the induction of MHC class II gene expression. |
LitCoin-entities-OrganismTaxon-PD
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 178-183 | OrganismTaxon | denotes | human | NCBItxid:9606 |
| T2 | 535-540 | OrganismTaxon | denotes | human | NCBItxid:9606 |
| T3 | 2115-2120 | OrganismTaxon | denotes | human | NCBItxid:9606 |
LitCoin_Mondo
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 190-196 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
| T2 | 547-553 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
| T3 | 2127-2133 | DiseaseOrPhenotypicFeature | denotes | cancer | 0004992 |
LitCoin-GeneOrGeneProduct-v0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-38 | GeneOrGeneProduct | denotes | histone deacetylase |
| T2 | 39-48 | GeneOrGeneProduct | denotes | inhibitor |
| T3 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T4 | 153-162 | GeneOrGeneProduct | denotes | activates |
| T5 | 163-172 | GeneOrGeneProduct | denotes | caspase-3 |
| T6 | 205-210 | GeneOrGeneProduct | denotes | cells |
| T7 | 248-267 | GeneOrGeneProduct | denotes | histone deacetylase |
| T8 | 269-273 | GeneOrGeneProduct | denotes | HDAC |
| T9 | 275-285 | GeneOrGeneProduct | denotes | inhibitors |
| T10 | 454-458 | GeneOrGeneProduct | denotes | HDAC |
| T11 | 459-468 | GeneOrGeneProduct | denotes | inhibitor |
| T12 | 496-504 | GeneOrGeneProduct | denotes | activity |
| T13 | 530-534 | GeneOrGeneProduct | denotes | in a |
| T14 | 554-558 | GeneOrGeneProduct | denotes | cell |
| T15 | 595-600 | GeneOrGeneProduct | denotes | cells |
| T16 | 630-639 | GeneOrGeneProduct | denotes | formation |
| T17 | 660-669 | GeneOrGeneProduct | denotes | viability |
| T18 | 715-720 | GeneOrGeneProduct | denotes | and 1 |
| T19 | 737-743 | GeneOrGeneProduct | denotes | for 24 |
| T20 | 765-768 | GeneOrGeneProduct | denotes | a 3 |
| T21 | 775-779 | GeneOrGeneProduct | denotes | fold |
| T22 | 792-801 | GeneOrGeneProduct | denotes | activated |
| T23 | 802-811 | GeneOrGeneProduct | denotes | caspase-3 |
| T24 | 842-850 | GeneOrGeneProduct | denotes | activate |
| T25 | 851-860 | GeneOrGeneProduct | denotes | caspase-3 |
| T26 | 1047-1051 | GeneOrGeneProduct | denotes | cell |
| T27 | 1076-1083 | GeneOrGeneProduct | denotes | process |
| T28 | 1125-1134 | GeneOrGeneProduct | denotes | formation |
| T29 | 1139-1148 | GeneOrGeneProduct | denotes | caspase-3 |
| T30 | 1151-1161 | GeneOrGeneProduct | denotes | activation |
| T31 | 1188-1194 | GeneOrGeneProduct | denotes | marked |
| T32 | 1211-1218 | GeneOrGeneProduct | denotes | antigen |
| T33 | 1219-1229 | GeneOrGeneProduct | denotes | processing |
| T34 | 1261-1275 | GeneOrGeneProduct | denotes | polysaccharide |
| T35 | 1276-1283 | GeneOrGeneProduct | denotes | antigen |
| T36 | 1288-1320 | GeneOrGeneProduct | denotes | major histocompatibility complex |
| T37 | 1322-1325 | GeneOrGeneProduct | denotes | MHC |
| T38 | 1334-1336 | GeneOrGeneProduct | denotes | GO |
| T39 | 1350-1353 | GeneOrGeneProduct | denotes | MHC |
| T40 | 1354-1361 | GeneOrGeneProduct | denotes | protein |
| T41 | 1371-1373 | GeneOrGeneProduct | denotes | GO |
| T42 | 1420-1425 | GeneOrGeneProduct | denotes | cells |
| T43 | 1487-1493 | GeneOrGeneProduct | denotes | marked |
| T44 | 1515-1519 | GeneOrGeneProduct | denotes | fold |
| T45 | 1538-1550 | GeneOrGeneProduct | denotes | MHC class II |
| T46 | 1538-1541 | GeneOrGeneProduct | denotes | MHC |
| T47 | 1569-1580 | GeneOrGeneProduct | denotes | MHC class I |
| T48 | 1569-1572 | GeneOrGeneProduct | denotes | MHC |
| T49 | 1694-1704 | GeneOrGeneProduct | denotes | regulation |
| T50 | 1708-1720 | GeneOrGeneProduct | denotes | MHC class II |
| T51 | 1708-1711 | GeneOrGeneProduct | denotes | MHC |
| T52 | 1750-1753 | GeneOrGeneProduct | denotes | pro |
| T53 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T54 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
| T55 | 1897-1909 | GeneOrGeneProduct | denotes | MHC class II |
| T56 | 1897-1900 | GeneOrGeneProduct | denotes | MHC |
| T57 | 1934-1943 | GeneOrGeneProduct | denotes | apoptosis |
| T58 | 1944-1951 | GeneOrGeneProduct | denotes | induced |
| T59 | 2004-2008 | GeneOrGeneProduct | denotes | best |
| T60 | 2107-2114 | GeneOrGeneProduct | denotes | induces |
| T61 | 2134-2138 | GeneOrGeneProduct | denotes | cell |
| T62 | 2139-2148 | GeneOrGeneProduct | denotes | apoptosis |
| T63 | 2193-2205 | GeneOrGeneProduct | denotes | MHC class II |
| T64 | 2193-2196 | GeneOrGeneProduct | denotes | MHC |
LitCoin-GeneOrGeneProduct-v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-38 | GeneOrGeneProduct | denotes | histone deacetylase |
| T2 | 39-48 | GeneOrGeneProduct | denotes | inhibitor |
| T3 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T4 | 163-172 | GeneOrGeneProduct | denotes | caspase-3 |
| T5 | 248-267 | GeneOrGeneProduct | denotes | histone deacetylase |
| T6 | 269-273 | GeneOrGeneProduct | denotes | HDAC |
| T7 | 275-285 | GeneOrGeneProduct | denotes | inhibitors |
| T8 | 454-458 | GeneOrGeneProduct | denotes | HDAC |
| T9 | 459-468 | GeneOrGeneProduct | denotes | inhibitor |
| T10 | 554-558 | GeneOrGeneProduct | denotes | cell |
| T11 | 660-669 | GeneOrGeneProduct | denotes | viability |
| T12 | 715-720 | GeneOrGeneProduct | denotes | and 1 |
| T13 | 775-779 | GeneOrGeneProduct | denotes | fold |
| T14 | 802-811 | GeneOrGeneProduct | denotes | caspase-3 |
| T15 | 851-860 | GeneOrGeneProduct | denotes | caspase-3 |
| T16 | 1047-1051 | GeneOrGeneProduct | denotes | cell |
| T17 | 1139-1148 | GeneOrGeneProduct | denotes | caspase-3 |
| T18 | 1211-1218 | GeneOrGeneProduct | denotes | antigen |
| T19 | 1219-1229 | GeneOrGeneProduct | denotes | processing |
| T20 | 1261-1275 | GeneOrGeneProduct | denotes | polysaccharide |
| T21 | 1276-1283 | GeneOrGeneProduct | denotes | antigen |
| T22 | 1288-1320 | GeneOrGeneProduct | denotes | major histocompatibility complex |
| T23 | 1322-1325 | GeneOrGeneProduct | denotes | MHC |
| T24 | 1350-1353 | GeneOrGeneProduct | denotes | MHC |
| T25 | 1354-1361 | GeneOrGeneProduct | denotes | protein |
| T26 | 1515-1519 | GeneOrGeneProduct | denotes | fold |
| T27 | 1538-1550 | GeneOrGeneProduct | denotes | MHC class II |
| T28 | 1538-1541 | GeneOrGeneProduct | denotes | MHC |
| T29 | 1569-1580 | GeneOrGeneProduct | denotes | MHC class I |
| T30 | 1569-1572 | GeneOrGeneProduct | denotes | MHC |
| T31 | 1708-1720 | GeneOrGeneProduct | denotes | MHC class II |
| T32 | 1708-1711 | GeneOrGeneProduct | denotes | MHC |
| T33 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T34 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
| T35 | 1897-1909 | GeneOrGeneProduct | denotes | MHC class II |
| T36 | 1897-1900 | GeneOrGeneProduct | denotes | MHC |
| T37 | 1934-1943 | GeneOrGeneProduct | denotes | apoptosis |
| T38 | 2004-2008 | GeneOrGeneProduct | denotes | best |
| T39 | 2134-2138 | GeneOrGeneProduct | denotes | cell |
| T40 | 2139-2148 | GeneOrGeneProduct | denotes | apoptosis |
| T41 | 2193-2205 | GeneOrGeneProduct | denotes | MHC class II |
| T42 | 2193-2196 | GeneOrGeneProduct | denotes | MHC |
LitCoin-Disease-MeSH
| Id | Subject | Object | Predicate | Lexical cue | originalLabel |
|---|---|---|---|---|---|
| T1 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
| T2 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
| T3 | 1052-1057 | DiseaseOrPhenotypicFeature | denotes | death | D003643 |
| T4 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
LitCoin-GeneOrGeneProduct-v3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-38 | GeneOrGeneProduct | denotes | histone deacetylase |
| T2 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T3 | 163-172 | GeneOrGeneProduct | denotes | caspase-3 |
| T4 | 248-267 | GeneOrGeneProduct | denotes | histone deacetylase |
| T5 | 269-273 | GeneOrGeneProduct | denotes | HDAC |
| T6 | 454-458 | GeneOrGeneProduct | denotes | HDAC |
| T7 | 802-811 | GeneOrGeneProduct | denotes | caspase-3 |
| T8 | 851-860 | GeneOrGeneProduct | denotes | caspase-3 |
| T9 | 1139-1148 | GeneOrGeneProduct | denotes | caspase-3 |
| T10 | 1261-1275 | GeneOrGeneProduct | denotes | polysaccharide |
| T11 | 1288-1332 | GeneOrGeneProduct | denotes | major histocompatibility complex (MHC) class |
| T12 | 1538-1550 | GeneOrGeneProduct | denotes | MHC class II |
| T13 | 1569-1580 | GeneOrGeneProduct | denotes | MHC class I |
| T14 | 1708-1720 | GeneOrGeneProduct | denotes | MHC class II |
| T15 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T16 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
| T17 | 1897-1909 | GeneOrGeneProduct | denotes | MHC class II |
| T18 | 2193-2205 | GeneOrGeneProduct | denotes | MHC class II |
LitCoin_Mondo_095
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer | 0021063|0005575|0002032 |
| T4 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer | 0021063|0005575|0002032 |
| T7 | 1334-1336 | DiseaseOrPhenotypicFeature | denotes | GO | 0009271 |
| T8 | 1371-1373 | DiseaseOrPhenotypicFeature | denotes | GO | 0009271 |
| T9 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer | 0021063|0005575|0002032 |
LitCoin-MeSH-Disease-2
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
| T2 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
| T3 | 1052-1057 | DiseaseOrPhenotypicFeature | denotes | death | D003643 |
| T4 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
LitCoin-MONDO_bioort2019
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T1 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
| T2 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
| T3 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 |
LitCoin_CellLine
| Id | Subject | Object | Predicate | Lexical cue | cellosaurus_accession_id |
|---|---|---|---|---|---|
| T1 | 197-204 | CellLine | denotes | HCT-116 | CVCL_0291 |
| T2 | 571-578 | CellLine | denotes | HCT-116 | CVCL_0291 |
| T3 | 580-584 | CellLine | denotes | HT29 | CVCL_0320|CVCL_A8EZ |
| T5 | 590-594 | CellLine | denotes | SW48 | CVCL_1724 |
LitCoin-Chemical-MeSH-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 19-38 | ChemicalEntity | denotes | histone deacetylase | D006655 |
| T2 | 49-61 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 |
| T3 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil | D005472|http://purl.obolibrary.org/obo/CHEBI_46345 |
| T5 | 248-267 | ChemicalEntity | denotes | histone deacetylase | D006655 |
| T6 | 269-273 | ChemicalEntity | denotes | HDAC | D006655 |
| T7 | 437-449 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 |
| T8 | 454-458 | ChemicalEntity | denotes | HDAC | D006655 |
| T9 | 508-522 | ChemicalEntity | denotes | 5-fluorouracil | D005472|http://purl.obolibrary.org/obo/CHEBI_46345 |
| T11 | 524-528 | ChemicalEntity | denotes | 5-FU | D005472|http://purl.obolibrary.org/obo/CHEBI_46345 |
| T13 | 700-704 | ChemicalEntity | denotes | 5-FU | D005472|http://purl.obolibrary.org/obo/CHEBI_46345 |
| T15 | 724-736 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 |
| T16 | 821-825 | ChemicalEntity | denotes | 5-FU | D005472|http://purl.obolibrary.org/obo/CHEBI_46345 |
| T18 | 939-943 | ChemicalEntity | denotes | 5-FU | D005472|http://purl.obolibrary.org/obo/CHEBI_46345 |
| T20 | 947-959 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 |
| T21 | 996-1000 | ChemicalEntity | denotes | 5-FU | D005472|http://purl.obolibrary.org/obo/CHEBI_46345 |
| T23 | 1005-1017 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 |
| T24 | 1261-1275 | ChemicalEntity | denotes | polysaccharide | D011134|http://purl.obolibrary.org/obo/CHEBI_18154 |
| T26 | 1458-1462 | ChemicalEntity | denotes | 5-FU | D005472|http://purl.obolibrary.org/obo/CHEBI_46345 |
| T28 | 1467-1479 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 |
| T29 | 1804-1808 | ChemicalEntity | denotes | 5-FU | D005472|http://purl.obolibrary.org/obo/CHEBI_46345 |
| T31 | 1813-1825 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 |
| T32 | 1974-1986 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 |
| T33 | 1991-1995 | ChemicalEntity | denotes | 5-FU | D005472|http://purl.obolibrary.org/obo/CHEBI_46345 |
| T35 | 2085-2089 | ChemicalEntity | denotes | 5-FU | D005472|http://purl.obolibrary.org/obo/CHEBI_46345 |
| T37 | 2094-2106 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 |
LitCoin-NCBITaxon-2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 178-183 | OrganismTaxon | denotes | human |
| T2 | 535-540 | OrganismTaxon | denotes | human |
| T3 | 2115-2120 | OrganismTaxon | denotes | human |
LitCoin-training-merged
| Id | Subject | Object | Predicate | Lexical cue | #label | ID: | cellosaurus_accession_id |
|---|---|---|---|---|---|---|---|
| T5 | 590-594 | CellLine | denotes | SW48 | CVCL_1724 | ||
| T3 | 580-584 | CellLine | denotes | HT29 | CVCL_A8EZ|CVCL_0320 | ||
| T2 | 571-578 | CellLine | denotes | HCT-116 | CVCL_0291 | ||
| T1 | 197-204 | CellLine | denotes | HCT-116 | CVCL_0291 | ||
| T37 | 2094-2106 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 | ||
| T35 | 2085-2089 | ChemicalEntity | denotes | 5-FU | http://purl.obolibrary.org/obo/CHEBI_46345|D005472 | ||
| T33 | 1991-1995 | ChemicalEntity | denotes | 5-FU | http://purl.obolibrary.org/obo/CHEBI_46345|D005472 | ||
| T32 | 1974-1986 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 | ||
| T31 | 1813-1825 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 | ||
| T29 | 1804-1808 | ChemicalEntity | denotes | 5-FU | http://purl.obolibrary.org/obo/CHEBI_46345|D005472 | ||
| T28 | 1467-1479 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 | ||
| T26 | 1458-1462 | ChemicalEntity | denotes | 5-FU | http://purl.obolibrary.org/obo/CHEBI_46345|D005472 | ||
| T24 | 1261-1275 | ChemicalEntity | denotes | polysaccharide | http://purl.obolibrary.org/obo/CHEBI_18154|D011134 | ||
| T23 | 1005-1017 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 | ||
| T21 | 996-1000 | ChemicalEntity | denotes | 5-FU | http://purl.obolibrary.org/obo/CHEBI_46345|D005472 | ||
| T20 | 947-959 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 | ||
| T18 | 939-943 | ChemicalEntity | denotes | 5-FU | http://purl.obolibrary.org/obo/CHEBI_46345|D005472 | ||
| T16 | 821-825 | ChemicalEntity | denotes | 5-FU | http://purl.obolibrary.org/obo/CHEBI_46345|D005472 | ||
| T15 | 724-736 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 | ||
| T13 | 700-704 | ChemicalEntity | denotes | 5-FU | http://purl.obolibrary.org/obo/CHEBI_46345|D005472 | ||
| T11 | 524-528 | ChemicalEntity | denotes | 5-FU | http://purl.obolibrary.org/obo/CHEBI_46345|D005472 | ||
| T9 | 508-522 | ChemicalEntity | denotes | 5-fluorouracil | http://purl.obolibrary.org/obo/CHEBI_46345|D005472 | ||
| T8 | 454-458 | ChemicalEntity | denotes | HDAC | D006655 | ||
| T7 | 437-449 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 | ||
| T6 | 269-273 | ChemicalEntity | denotes | HDAC | D006655 | ||
| T14705 | 248-267 | ChemicalEntity | denotes | histone deacetylase | D006655 | ||
| T7500 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil | http://purl.obolibrary.org/obo/CHEBI_46345|D005472 | ||
| T41740 | 49-61 | ChemicalEntity | denotes | depsipeptide | http://purl.obolibrary.org/obo/CHEBI_23643 | ||
| T48679 | 19-38 | ChemicalEntity | denotes | histone deacetylase | D006655 | ||
| T48282 | 2193-2205 | GeneOrGeneProduct | denotes | MHC class II | |||
| T17 | 1897-1909 | GeneOrGeneProduct | denotes | MHC class II | |||
| T91708 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA | |||
| T30217 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF | |||
| T14 | 1708-1720 | GeneOrGeneProduct | denotes | MHC class II | |||
| T2873 | 1569-1580 | GeneOrGeneProduct | denotes | MHC class I | |||
| T12 | 1538-1550 | GeneOrGeneProduct | denotes | MHC class II | |||
| T62226 | 1288-1332 | GeneOrGeneProduct | denotes | major histocompatibility complex (MHC) class | |||
| T10 | 1261-1275 | GeneOrGeneProduct | denotes | polysaccharide | |||
| T37240 | 1139-1148 | GeneOrGeneProduct | denotes | caspase-3 | |||
| T80440 | 851-860 | GeneOrGeneProduct | denotes | caspase-3 | |||
| T63739 | 802-811 | GeneOrGeneProduct | denotes | caspase-3 | |||
| T7756 | 454-458 | GeneOrGeneProduct | denotes | HDAC | |||
| T5091 | 269-273 | GeneOrGeneProduct | denotes | HDAC | |||
| T4 | 248-267 | GeneOrGeneProduct | denotes | histone deacetylase | |||
| T64029 | 163-172 | GeneOrGeneProduct | denotes | caspase-3 | |||
| T83000 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II | |||
| T27461 | 19-38 | GeneOrGeneProduct | denotes | histone deacetylase | |||
| T13494 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 | ||
| T56874 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 | ||
| T32276 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer | D003110 | ||
| T44584 | 2115-2120 | OrganismTaxon | denotes | human | |||
| T11364 | 535-540 | OrganismTaxon | denotes | human | |||
| T87985 | 178-183 | OrganismTaxon | denotes | human |
biored-valid
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-38 | GeneOrGeneProduct | denotes | histone deacetylase |
| T2 | 49-61 | ChemicalEntity | denotes | depsipeptide |
| T3 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T4 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T5 | 139-142 | GeneOrGeneProduct | denotes | p21 |
| T6 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T7 | 178-183 | OrganismTaxon | denotes | human |
| T8 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T9 | 197-204 | CellLine | denotes | HCT-116 |
| T10 | 248-267 | GeneOrGeneProduct | denotes | histone deacetylase |
| T11 | 269-273 | GeneOrGeneProduct | denotes | HDAC |
| T12 | 437-449 | ChemicalEntity | denotes | depsipeptide |
| T13 | 454-458 | GeneOrGeneProduct | denotes | HDAC |
| T14 | 508-522 | ChemicalEntity | denotes | 5-fluorouracil |
| T15 | 524-528 | ChemicalEntity | denotes | 5-FU |
| T16 | 535-540 | OrganismTaxon | denotes | human |
| T17 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T18 | 571-578 | CellLine | denotes | HCT-116 |
| T19 | 580-584 | CellLine | denotes | HT29 |
| T20 | 590-594 | CellLine | denotes | SW48 |
| T21 | 700-704 | ChemicalEntity | denotes | 5-FU |
| T22 | 724-736 | ChemicalEntity | denotes | depsipeptide |
| T23 | 802-813 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T24 | 821-825 | ChemicalEntity | denotes | 5-FU |
| T25 | 851-862 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T26 | 939-943 | ChemicalEntity | denotes | 5-FU |
| T27 | 947-959 | ChemicalEntity | denotes | depsipeptide |
| T28 | 996-1000 | ChemicalEntity | denotes | 5-FU |
| T29 | 1005-1017 | ChemicalEntity | denotes | depsipeptide |
| T30 | 1139-1150 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T31 | 1261-1275 | ChemicalEntity | denotes | polysaccharide |
| T32 | 1288-1332 | GeneOrGeneProduct | denotes | major histocompatibility complex (MHC) class |
| T33 | 1350-1369 | GeneOrGeneProduct | denotes | MHC protein complex |
| T34 | 1458-1462 | ChemicalEntity | denotes | 5-FU |
| T35 | 1467-1479 | ChemicalEntity | denotes | depsipeptide |
| T36 | 1538-1556 | GeneOrGeneProduct | denotes | MHC class II genes |
| T37 | 1569-1586 | GeneOrGeneProduct | denotes | MHC class I genes |
| T38 | 1708-1726 | GeneOrGeneProduct | denotes | MHC class II genes |
| T39 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T40 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
| T41 | 1804-1808 | ChemicalEntity | denotes | 5-FU |
| T42 | 1813-1825 | ChemicalEntity | denotes | depsipeptide |
| T43 | 1897-1909 | GeneOrGeneProduct | denotes | MHC class II |
| T44 | 1974-1986 | ChemicalEntity | denotes | depsipeptide |
| T45 | 1991-1995 | ChemicalEntity | denotes | 5-FU |
| T46 | 2085-2089 | ChemicalEntity | denotes | 5-FU |
| T47 | 2094-2106 | ChemicalEntity | denotes | depsipeptide |
| T48 | 2115-2120 | OrganismTaxon | denotes | human |
| T49 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T50 | 2193-2205 | GeneOrGeneProduct | denotes | MHC class II |
biored-valid-deepseek-nr-ng
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-38 | GeneOrGeneProduct | denotes | histone deacetylase |
| T2 | 39-48 | ChemicalEntity | denotes | inhibitor |
| T3 | 49-61 | ChemicalEntity | denotes | depsipeptide |
| T4 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T5 | 81-92 | GeneOrGeneProduct | denotes | upregulates |
| T6 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T7 | 139-142 | GeneOrGeneProduct | denotes | p21 |
| T8 | 143-148 | GeneOrGeneProduct | denotes | genes |
| T9 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T10 | 178-196 | DiseaseOrPhenotypicFeature | denotes | human colon cancer |
| T11 | 197-204 | CellLine | denotes | HCT-116 |
| T12 | 205-210 | CellLine | denotes | cells |
| T13 | 212-222 | ChemicalEntity | denotes | Epigenetic |
| T14 | 223-233 | ChemicalEntity | denotes | anticancer |
| T15 | 234-239 | ChemicalEntity | denotes | drugs |
| T16 | 248-267 | GeneOrGeneProduct | denotes | histone deacetylase |
| T17 | 319-335 | ChemicalEntity | denotes | anticancer drugs |
| T18 | 437-449 | ChemicalEntity | denotes | depsipeptide |
| T19 | 454-468 | ChemicalEntity | denotes | HDAC inhibitor |
| T20 | 486-504 | DiseaseOrPhenotypicFeature | denotes | antitumor activity |
| T21 | 508-522 | ChemicalEntity | denotes | 5-fluorouracil |
| T22 | 535-553 | DiseaseOrPhenotypicFeature | denotes | human colon cancer |
| T23 | 554-564 | CellLine | denotes | cell model |
| T24 | 571-578 | CellLine | denotes | HCT-116 |
| T25 | 580-584 | CellLine | denotes | HT29 |
| T26 | 590-594 | CellLine | denotes | SW48 |
| T27 | 595-600 | CellLine | denotes | cells |
| T28 | 623-639 | DiseaseOrPhenotypicFeature | denotes | colony formation |
| T29 | 651-669 | DiseaseOrPhenotypicFeature | denotes | cellular viability |
| T30 | 700-714 | ChemicalEntity | denotes | 5-FU (1.75 µM) |
| T31 | 719-736 | ChemicalEntity | denotes | 1 nM depsipeptide |
| T32 | 802-813 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T33 | 821-831 | ChemicalEntity | denotes | 5-FU alone |
| T34 | 864-874 | GeneOrGeneProduct | denotes | Microarray |
| T35 | 890-912 | GeneOrGeneProduct | denotes | gene ontology analyses |
| T36 | 939-959 | ChemicalEntity | denotes | 5-FU or depsipeptide |
| T37 | 996-1017 | ChemicalEntity | denotes | 5-FU and depsipeptide |
| T38 | 1018-1029 | GeneOrGeneProduct | denotes | upregulated |
| T39 | 1030-1035 | GeneOrGeneProduct | denotes | genes |
| T40 | 1047-1057 | DiseaseOrPhenotypicFeature | denotes | cell death |
| T41 | 1066-1083 | DiseaseOrPhenotypicFeature | denotes | apoptotic process |
| T42 | 1151-1161 | GeneOrGeneProduct | denotes | activation |
| T43 | 1188-1207 | GeneOrGeneProduct | denotes | marked upregulation |
| T44 | 1211-1246 | GeneOrGeneProduct | denotes | antigen processing and presentation |
| T45 | 1261-1283 | ChemicalEntity | denotes | polysaccharide antigen |
| T46 | 1288-1326 | GeneOrGeneProduct | denotes | major histocompatibility complex (MHC) |
| T47 | 1327-1332 | GeneOrGeneProduct | denotes | class |
| T48 | 1334-1344 | GeneOrGeneProduct | denotes | GO:0002504 |
| T49 | 1350-1369 | GeneOrGeneProduct | denotes | MHC protein complex |
| T50 | 1371-1381 | GeneOrGeneProduct | denotes | GO:0042611 |
| T51 | 1398-1414 | ChemicalEntity | denotes | vehicle controls |
| T52 | 1420-1425 | CellLine | denotes | cells |
| T53 | 1458-1479 | ChemicalEntity | denotes | 5-FU and depsipeptide |
| T54 | 1487-1503 | GeneOrGeneProduct | denotes | marked induction |
| T55 | 1505-1519 | GeneOrGeneProduct | denotes | 3- to 8.5-fold |
| T56 | 1524-1534 | GeneOrGeneProduct | denotes | expression |
| T57 | 1538-1586 | GeneOrGeneProduct | denotes | MHC class II genes, but not of MHC class I genes |
| T58 | 1605-1620 | GeneOrGeneProduct | denotes | global analysis |
| T59 | 1624-1639 | GeneOrGeneProduct | denotes | gene expression |
| T60 | 1684-1726 | GeneOrGeneProduct | denotes | molecular regulation of MHC class II genes |
| T61 | 1735-1746 | GeneOrGeneProduct | denotes | enhancement |
| T62 | 1750-1763 | DiseaseOrPhenotypicFeature | denotes | pro-apoptotic |
| T63 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T64 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
| T65 | 1833-1840 | GeneOrGeneProduct | denotes | results |
| T66 | 1856-1862 | GeneOrGeneProduct | denotes | closer |
| T67 | 1863-1875 | GeneOrGeneProduct | denotes | relationship |
| T68 | 1884-1893 | GeneOrGeneProduct | denotes | elevation |
| T69 | 1897-1943 | GeneOrGeneProduct | denotes | MHC class II expression and cellular apoptosis |
| T70 | 2039-2050 | GeneOrGeneProduct | denotes | first study |
| T71 | 2107-2114 | GeneOrGeneProduct | denotes | induces |
| T72 | 2115-2133 | DiseaseOrPhenotypicFeature | denotes | human colon cancer |
| T73 | 2154-2170 | GeneOrGeneProduct | denotes | concerted manner |
| T74 | 2193-2221 | GeneOrGeneProduct | denotes | MHC class II gene expression |
biored-valid-deepseek-nr-g
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-61 | ChemicalEntity | denotes | histone deacetylase inhibitor depsipeptide |
| T2 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T3 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T4 | 139-142 | GeneOrGeneProduct | denotes | p21 |
| T5 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T6 | 178-196 | DiseaseOrPhenotypicFeature | denotes | human colon cancer |
| T7 | 197-204 | CellLine | denotes | HCT-116 |
| T8 | 205-210 | CellLine | denotes | cells |
| T9 | 223-239 | ChemicalEntity | denotes | anticancer drugs |
| T10 | 248-274 | GeneOrGeneProduct | denotes | histone deacetylase (HDAC) |
| T11 | 275-285 | ChemicalEntity | denotes | inhibitors |
| T12 | 437-449 | ChemicalEntity | denotes | depsipeptide |
| T13 | 508-522 | ChemicalEntity | denotes | 5-fluorouracil |
| T14 | 524-528 | ChemicalEntity | denotes | 5-FU |
| T15 | 535-553 | DiseaseOrPhenotypicFeature | denotes | human colon cancer |
| T16 | 571-578 | CellLine | denotes | HCT-116 |
| T17 | 580-584 | CellLine | denotes | HT29 |
| T18 | 590-594 | CellLine | denotes | SW48 |
| T19 | 595-600 | CellLine | denotes | cells |
| T20 | 700-704 | ChemicalEntity | denotes | 5-FU |
| T21 | 724-736 | ChemicalEntity | denotes | depsipeptide |
| T22 | 802-813 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T23 | 821-825 | ChemicalEntity | denotes | 5-FU |
| T24 | 947-959 | ChemicalEntity | denotes | depsipeptide |
| T25 | 996-1000 | ChemicalEntity | denotes | 5-FU |
| T26 | 1005-1017 | ChemicalEntity | denotes | depsipeptide |
| T27 | 1288-1326 | GeneOrGeneProduct | denotes | major histocompatibility complex (MHC) |
| T28 | 1327-1332 | GeneOrGeneProduct | denotes | class |
| T29 | 1538-1550 | GeneOrGeneProduct | denotes | MHC class II |
| T30 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T31 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
biored-valid-deepseek-r-ng
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-38 | GeneOrGeneProduct | denotes | histone deacetylase |
| T2 | 49-61 | ChemicalEntity | denotes | depsipeptide |
| T3 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T4 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T5 | 139-148 | GeneOrGeneProduct | denotes | p21 genes |
| T6 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T7 | 178-183 | OrganismTaxon | denotes | human |
| T8 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T9 | 197-204 | CellLine | denotes | HCT-116 |
| T10 | 524-528 | ChemicalEntity | denotes | 5-FU |
| T11 | 580-584 | CellLine | denotes | HT29 |
| T12 | 590-600 | CellLine | denotes | SW48 cells |
| T13 | 802-813 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T14 | 1538-1556 | GeneOrGeneProduct | denotes | MHC class II genes |
| T15 | 1569-1586 | GeneOrGeneProduct | denotes | MHC class I genes |
| T16 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T17 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
biored-valid-deepseek-r-g
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-38 | GeneOrGeneProduct | denotes | histone deacetylase |
| T2 | 49-61 | ChemicalEntity | denotes | depsipeptide |
| T3 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T4 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T5 | 139-142 | GeneOrGeneProduct | denotes | p21 |
| T6 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T7 | 178-183 | OrganismTaxon | denotes | human |
| T8 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T9 | 197-204 | CellLine | denotes | HCT-116 |
| T10 | 269-273 | GeneOrGeneProduct | denotes | HDAC |
| T11 | 524-528 | ChemicalEntity | denotes | 5-FU |
| T12 | 580-584 | CellLine | denotes | HT29 |
| T13 | 590-594 | CellLine | denotes | SW48 |
| T14 | 821-825 | ChemicalEntity | denotes | 5-FU |
| T15 | 947-959 | ChemicalEntity | denotes | depsipeptide |
| T16 | 1322-1325 | GeneOrGeneProduct | denotes | MHC |
| T17 | 1538-1550 | GeneOrGeneProduct | denotes | MHC class II |
| T18 | 1569-1586 | GeneOrGeneProduct | denotes | MHC class I genes |
| T19 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T20 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
biored-valid-gemini-nr-ng
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-48 | ChemicalEntity | denotes | histone deacetylase inhibitor |
| T2 | 49-61 | ChemicalEntity | denotes | depsipeptide |
| T3 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T4 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T5 | 139-142 | GeneOrGeneProduct | denotes | p21 |
| T6 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T7 | 178-183 | OrganismTaxon | denotes | human |
| T8 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T9 | 197-204 | CellLine | denotes | HCT-116 |
| T10 | 248-267 | GeneOrGeneProduct | denotes | histone deacetylase |
| T11 | 269-273 | GeneOrGeneProduct | denotes | HDAC |
| T12 | 275-285 | ChemicalEntity | denotes | inhibitors |
| T13 | 437-449 | ChemicalEntity | denotes | depsipeptide |
| T14 | 454-458 | GeneOrGeneProduct | denotes | HDAC |
| T15 | 459-468 | ChemicalEntity | denotes | inhibitor |
| T16 | 508-522 | ChemicalEntity | denotes | 5-fluorouracil |
| T17 | 524-528 | ChemicalEntity | denotes | 5-FU |
| T18 | 535-540 | OrganismTaxon | denotes | human |
| T19 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T20 | 571-578 | CellLine | denotes | HCT-116 |
| T21 | 580-584 | CellLine | denotes | HT29 |
| T22 | 590-594 | CellLine | denotes | SW48 |
| T23 | 700-704 | ChemicalEntity | denotes | 5-FU |
| T24 | 724-736 | ChemicalEntity | denotes | depsipeptide |
| T25 | 802-813 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T26 | 821-825 | ChemicalEntity | denotes | 5-FU |
| T27 | 851-862 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T28 | 996-1000 | ChemicalEntity | denotes | 5-FU |
| T29 | 1005-1017 | ChemicalEntity | denotes | depsipeptide |
| T30 | 1288-1320 | GeneOrGeneProduct | denotes | major histocompatibility complex |
| T31 | 1322-1325 | GeneOrGeneProduct | denotes | MHC |
| T32 | 1350-1369 | GeneOrGeneProduct | denotes | MHC protein complex |
| T33 | 1458-1462 | ChemicalEntity | denotes | 5-FU |
| T34 | 1467-1479 | ChemicalEntity | denotes | depsipeptide |
| T35 | 1538-1556 | GeneOrGeneProduct | denotes | MHC class II genes |
| T36 | 1569-1586 | GeneOrGeneProduct | denotes | MHC class I genes |
| T37 | 1708-1725 | GeneOrGeneProduct | denotes | MHC class II gene |
| T38 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T39 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
| T40 | 2115-2120 | OrganismTaxon | denotes | human |
| T41 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T42 | 2134-2148 | DiseaseOrPhenotypicFeature | denotes | cell apoptosis |
biored-valid-gemini-r-ng
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-48 | ChemicalEntity | denotes | histone deacetylase inhibitor |
| T2 | 49-61 | ChemicalEntity | denotes | depsipeptide |
| T3 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T4 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T5 | 139-148 | GeneOrGeneProduct | denotes | p21 genes |
| T6 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T7 | 178-183 | OrganismTaxon | denotes | human |
| T8 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T9 | 197-210 | CellLine | denotes | HCT-116 cells |
| T10 | 248-267 | GeneOrGeneProduct | denotes | histone deacetylase |
| T11 | 269-273 | GeneOrGeneProduct | denotes | HDAC |
| T12 | 319-335 | ChemicalEntity | denotes | anticancer drugs |
| T13 | 437-449 | ChemicalEntity | denotes | depsipeptide |
| T14 | 454-468 | ChemicalEntity | denotes | HDAC inhibitor |
| T15 | 508-522 | ChemicalEntity | denotes | 5-fluorouracil |
| T16 | 524-528 | ChemicalEntity | denotes | 5-FU |
| T17 | 535-540 | OrganismTaxon | denotes | human |
| T18 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T19 | 571-578 | CellLine | denotes | HCT-116 |
| T20 | 580-584 | CellLine | denotes | HT29 |
| T21 | 590-600 | CellLine | denotes | SW48 cells |
| T22 | 700-704 | ChemicalEntity | denotes | 5-FU |
| T23 | 724-736 | ChemicalEntity | denotes | depsipeptide |
| T24 | 802-813 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T25 | 821-825 | ChemicalEntity | denotes | 5-FU |
| T26 | 851-862 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T27 | 947-959 | ChemicalEntity | denotes | depsipeptide |
| T28 | 996-1000 | ChemicalEntity | denotes | 5-FU |
| T29 | 1005-1017 | ChemicalEntity | denotes | depsipeptide |
| T30 | 1288-1320 | GeneOrGeneProduct | denotes | major histocompatibility complex |
| T31 | 1322-1325 | GeneOrGeneProduct | denotes | MHC |
| T32 | 1350-1369 | GeneOrGeneProduct | denotes | MHC protein complex |
| T33 | 1458-1462 | ChemicalEntity | denotes | 5-FU |
| T34 | 1467-1479 | ChemicalEntity | denotes | depsipeptide |
| T35 | 1538-1556 | GeneOrGeneProduct | denotes | MHC class II genes |
| T36 | 1569-1586 | GeneOrGeneProduct | denotes | MHC class I genes |
| T37 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T38 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
| T39 | 1804-1808 | ChemicalEntity | denotes | 5-FU |
| T40 | 1813-1825 | ChemicalEntity | denotes | depsipeptide |
| T41 | 1897-1909 | GeneOrGeneProduct | denotes | MHC class II |
| T42 | 1925-1943 | DiseaseOrPhenotypicFeature | denotes | cellular apoptosis |
| T43 | 2115-2120 | OrganismTaxon | denotes | human |
| T44 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T45 | 2134-2148 | DiseaseOrPhenotypicFeature | denotes | cell apoptosis |
biored-valid-gemini-r-g
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-48 | ChemicalEntity | denotes | histone deacetylase inhibitor |
| T2 | 49-61 | ChemicalEntity | denotes | depsipeptide |
| T3 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T4 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T5 | 139-142 | GeneOrGeneProduct | denotes | p21 |
| T6 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T7 | 178-183 | OrganismTaxon | denotes | human |
| T8 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T9 | 197-204 | CellLine | denotes | HCT-116 |
| T10 | 248-285 | ChemicalEntity | denotes | histone deacetylase (HDAC) inhibitors |
| T11 | 437-449 | ChemicalEntity | denotes | depsipeptide |
| T12 | 454-468 | ChemicalEntity | denotes | HDAC inhibitor |
| T13 | 508-522 | ChemicalEntity | denotes | 5-fluorouracil |
| T14 | 524-528 | ChemicalEntity | denotes | 5-FU |
| T15 | 535-540 | OrganismTaxon | denotes | human |
| T16 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T17 | 571-578 | CellLine | denotes | HCT-116 |
| T18 | 580-584 | CellLine | denotes | HT29 |
| T19 | 590-594 | CellLine | denotes | SW48 |
| T20 | 700-704 | ChemicalEntity | denotes | 5-FU |
| T21 | 724-736 | ChemicalEntity | denotes | depsipeptide |
| T22 | 802-813 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T23 | 821-825 | ChemicalEntity | denotes | 5-FU |
| T24 | 947-959 | ChemicalEntity | denotes | depsipeptide |
| T25 | 1139-1150 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T26 | 1288-1320 | GeneOrGeneProduct | denotes | major histocompatibility complex |
| T27 | 1322-1325 | GeneOrGeneProduct | denotes | MHC |
| T28 | 1350-1369 | GeneOrGeneProduct | denotes | MHC protein complex |
| T29 | 1458-1462 | ChemicalEntity | denotes | 5-FU |
| T30 | 1467-1479 | ChemicalEntity | denotes | depsipeptide |
| T31 | 1538-1550 | GeneOrGeneProduct | denotes | MHC class II |
| T32 | 1708-1720 | GeneOrGeneProduct | denotes | MHC class II |
| T33 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T34 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
| T35 | 1804-1808 | ChemicalEntity | denotes | 5-FU |
| T36 | 1813-1825 | ChemicalEntity | denotes | depsipeptide |
| T37 | 1897-1909 | GeneOrGeneProduct | denotes | MHC class II |
| T38 | 2115-2120 | OrganismTaxon | denotes | human |
| T39 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
biored-valid-gpt-nr-ng
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 49-61 | ChemicalEntity | denotes | depsipeptide |
| T2 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T3 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T4 | 139-142 | GeneOrGeneProduct | denotes | p21 |
| T5 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T6 | 178-183 | OrganismTaxon | denotes | human |
| T7 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T8 | 197-204 | CellLine | denotes | HCT-116 |
biored-valid-gpt-r-g
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-38 | GeneOrGeneProduct | denotes | histone deacetylase |
| T2 | 49-61 | ChemicalEntity | denotes | depsipeptide |
| T3 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T4 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T5 | 139-142 | GeneOrGeneProduct | denotes | p21 |
| T6 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T7 | 178-183 | OrganismTaxon | denotes | human |
| T8 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T9 | 197-204 | CellLine | denotes | HCT-116 |
| T10 | 248-267 | GeneOrGeneProduct | denotes | histone deacetylase |
| T11 | 269-273 | GeneOrGeneProduct | denotes | HDAC |
| T12 | 437-449 | ChemicalEntity | denotes | depsipeptide |
| T13 | 454-458 | GeneOrGeneProduct | denotes | HDAC |
| T14 | 508-522 | ChemicalEntity | denotes | 5-fluorouracil |
| T15 | 524-528 | ChemicalEntity | denotes | 5-FU |
| T16 | 535-540 | OrganismTaxon | denotes | human |
| T17 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T18 | 571-578 | CellLine | denotes | HCT-116 |
| T19 | 580-584 | CellLine | denotes | HT29 |
| T20 | 590-594 | CellLine | denotes | SW48 |
| T21 | 700-704 | ChemicalEntity | denotes | 5-FU |
| T22 | 724-736 | ChemicalEntity | denotes | depsipeptide |
| T23 | 802-813 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T24 | 821-825 | ChemicalEntity | denotes | 5-FU |
| T25 | 939-943 | ChemicalEntity | denotes | 5-FU |
| T26 | 947-959 | ChemicalEntity | denotes | depsipeptide |
| T27 | 996-1000 | ChemicalEntity | denotes | 5-FU |
| T28 | 1005-1017 | ChemicalEntity | denotes | depsipeptide |
| T29 | 1139-1150 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T30 | 1288-1326 | GeneOrGeneProduct | denotes | major histocompatibility complex (MHC) |
| T31 | 1350-1369 | GeneOrGeneProduct | denotes | MHC protein complex |
| T32 | 1538-1556 | GeneOrGeneProduct | denotes | MHC class II genes |
| T33 | 1569-1586 | GeneOrGeneProduct | denotes | MHC class I genes |
| T34 | 1708-1726 | GeneOrGeneProduct | denotes | MHC class II genes |
| T35 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T36 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
| T37 | 1804-1808 | ChemicalEntity | denotes | 5-FU |
| T38 | 1813-1825 | ChemicalEntity | denotes | depsipeptide |
| T39 | 1897-1909 | GeneOrGeneProduct | denotes | MHC class II |
| T40 | 1974-1986 | ChemicalEntity | denotes | depsipeptide |
| T41 | 1991-1995 | ChemicalEntity | denotes | 5-FU |
| T42 | 2085-2089 | ChemicalEntity | denotes | 5-FU |
| T43 | 2094-2106 | ChemicalEntity | denotes | depsipeptide |
| T44 | 2115-2120 | OrganismTaxon | denotes | human |
| T45 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T46 | 2193-2205 | GeneOrGeneProduct | denotes | MHC class II |
biored-valid-gpt-nr-g
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-48 | ChemicalEntity | denotes | histone deacetylase inhibitor |
| T2 | 49-61 | ChemicalEntity | denotes | depsipeptide |
| T3 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T4 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T5 | 139-148 | GeneOrGeneProduct | denotes | p21 genes |
| T6 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T7 | 178-183 | OrganismTaxon | denotes | human |
| T8 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T9 | 197-204 | CellLine | denotes | HCT-116 |
| T10 | 248-285 | ChemicalEntity | denotes | histone deacetylase (HDAC) inhibitors |
| T11 | 437-449 | ChemicalEntity | denotes | depsipeptide |
| T12 | 454-468 | ChemicalEntity | denotes | HDAC inhibitor |
| T13 | 508-522 | ChemicalEntity | denotes | 5-fluorouracil |
| T14 | 524-528 | ChemicalEntity | denotes | 5-FU |
| T15 | 535-540 | OrganismTaxon | denotes | human |
| T16 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T17 | 571-578 | CellLine | denotes | HCT-116 |
| T18 | 580-584 | CellLine | denotes | HT29 |
| T19 | 590-594 | CellLine | denotes | SW48 |
| T20 | 700-704 | ChemicalEntity | denotes | 5-FU |
| T21 | 724-736 | ChemicalEntity | denotes | depsipeptide |
| T22 | 802-813 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T23 | 821-825 | ChemicalEntity | denotes | 5-FU |
| T24 | 939-943 | ChemicalEntity | denotes | 5-FU |
| T25 | 947-959 | ChemicalEntity | denotes | depsipeptide |
| T26 | 996-1000 | ChemicalEntity | denotes | 5-FU |
| T27 | 1005-1017 | ChemicalEntity | denotes | depsipeptide |
| T28 | 1538-1556 | GeneOrGeneProduct | denotes | MHC class II genes |
| T29 | 1569-1586 | GeneOrGeneProduct | denotes | MHC class I genes |
| T30 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T31 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
| T32 | 1804-1808 | ChemicalEntity | denotes | 5-FU |
| T33 | 1813-1825 | ChemicalEntity | denotes | depsipeptide |
| T34 | 1897-1909 | GeneOrGeneProduct | denotes | MHC class II |
| T35 | 1974-1986 | ChemicalEntity | denotes | depsipeptide |
| T36 | 1991-1995 | ChemicalEntity | denotes | 5-FU |
| T37 | 2085-2089 | ChemicalEntity | denotes | 5-FU |
| T38 | 2094-2106 | ChemicalEntity | denotes | depsipeptide |
| T39 | 2115-2120 | OrganismTaxon | denotes | human |
| T40 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T41 | 2193-2210 | GeneOrGeneProduct | denotes | MHC class II gene |
biored-valid-gpt-r-ng
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-38 | GeneOrGeneProduct | denotes | histone deacetylase |
| T2 | 49-61 | ChemicalEntity | denotes | depsipeptide |
| T3 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T4 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T5 | 139-142 | GeneOrGeneProduct | denotes | p21 |
| T6 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T7 | 178-183 | OrganismTaxon | denotes | human |
| T8 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T9 | 197-204 | CellLine | denotes | HCT-116 |
| T10 | 248-267 | GeneOrGeneProduct | denotes | histone deacetylase |
| T11 | 269-273 | GeneOrGeneProduct | denotes | HDAC |
| T12 | 437-449 | ChemicalEntity | denotes | depsipeptide |
| T13 | 454-458 | GeneOrGeneProduct | denotes | HDAC |
| T14 | 508-522 | ChemicalEntity | denotes | 5-fluorouracil |
| T15 | 524-528 | ChemicalEntity | denotes | 5-FU |
| T16 | 535-540 | OrganismTaxon | denotes | human |
| T17 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T18 | 571-578 | CellLine | denotes | HCT-116 |
| T19 | 580-584 | CellLine | denotes | HT29 |
| T20 | 590-594 | CellLine | denotes | SW48 |
| T21 | 623-639 | DiseaseOrPhenotypicFeature | denotes | colony formation |
| T22 | 651-669 | DiseaseOrPhenotypicFeature | denotes | cellular viability |
| T23 | 700-704 | ChemicalEntity | denotes | 5-FU |
| T24 | 724-736 | ChemicalEntity | denotes | depsipeptide |
| T25 | 802-813 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T26 | 821-825 | ChemicalEntity | denotes | 5-FU |
| T27 | 939-943 | ChemicalEntity | denotes | 5-FU |
| T28 | 947-959 | ChemicalEntity | denotes | depsipeptide |
| T29 | 996-1000 | ChemicalEntity | denotes | 5-FU |
| T30 | 1005-1017 | ChemicalEntity | denotes | depsipeptide |
| T31 | 1047-1057 | DiseaseOrPhenotypicFeature | denotes | cell death |
| T32 | 1066-1083 | DiseaseOrPhenotypicFeature | denotes | apoptotic process |
| T33 | 1118-1134 | DiseaseOrPhenotypicFeature | denotes | colony formation |
| T34 | 1139-1150 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T35 | 1250-1257 | ChemicalEntity | denotes | peptide |
| T36 | 1261-1275 | ChemicalEntity | denotes | polysaccharide |
| T37 | 1288-1320 | GeneOrGeneProduct | denotes | major histocompatibility complex |
| T38 | 1322-1325 | GeneOrGeneProduct | denotes | MHC |
| T39 | 1350-1369 | GeneOrGeneProduct | denotes | MHC protein complex |
| T40 | 1458-1462 | ChemicalEntity | denotes | 5-FU |
| T41 | 1467-1479 | ChemicalEntity | denotes | depsipeptide |
| T42 | 1538-1550 | GeneOrGeneProduct | denotes | MHC class II |
| T43 | 1708-1720 | GeneOrGeneProduct | denotes | MHC class II |
| T44 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T45 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
| T46 | 1804-1808 | ChemicalEntity | denotes | 5-FU |
| T47 | 1813-1825 | ChemicalEntity | denotes | depsipeptide |
| T48 | 1897-1909 | GeneOrGeneProduct | denotes | MHC class II |
| T49 | 1934-1943 | DiseaseOrPhenotypicFeature | denotes | apoptosis |
| T50 | 1974-1986 | ChemicalEntity | denotes | depsipeptide |
| T51 | 1991-1995 | ChemicalEntity | denotes | 5-FU |
| T52 | 2085-2089 | ChemicalEntity | denotes | 5-FU |
| T53 | 2094-2106 | ChemicalEntity | denotes | depsipeptide |
| T54 | 2115-2120 | OrganismTaxon | denotes | human |
| T55 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T56 | 2139-2148 | DiseaseOrPhenotypicFeature | denotes | apoptosis |
| T57 | 2193-2205 | GeneOrGeneProduct | denotes | MHC class II |
biored-valid-gemini-nr-g
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-48 | ChemicalEntity | denotes | histone deacetylase inhibitor |
| T2 | 49-61 | ChemicalEntity | denotes | depsipeptide |
| T3 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T4 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T5 | 139-142 | GeneOrGeneProduct | denotes | p21 |
| T6 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T7 | 178-183 | OrganismTaxon | denotes | human |
| T8 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T9 | 197-204 | CellLine | denotes | HCT-116 |
| T10 | 248-267 | GeneOrGeneProduct | denotes | histone deacetylase |
| T11 | 269-273 | GeneOrGeneProduct | denotes | HDAC |
| T12 | 275-285 | ChemicalEntity | denotes | inhibitors |
| T13 | 319-335 | ChemicalEntity | denotes | anticancer drugs |
| T14 | 437-449 | ChemicalEntity | denotes | depsipeptide |
| T15 | 454-468 | ChemicalEntity | denotes | HDAC inhibitor |
| T16 | 508-522 | ChemicalEntity | denotes | 5-fluorouracil |
| T17 | 524-528 | ChemicalEntity | denotes | 5-FU |
| T18 | 535-540 | OrganismTaxon | denotes | human |
| T19 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T20 | 571-578 | CellLine | denotes | HCT-116 |
| T21 | 580-584 | CellLine | denotes | HT29 |
| T22 | 590-594 | CellLine | denotes | SW48 |
| T23 | 700-704 | ChemicalEntity | denotes | 5-FU |
| T24 | 724-736 | ChemicalEntity | denotes | depsipeptide |
| T25 | 802-813 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T26 | 821-825 | ChemicalEntity | denotes | 5-FU |
| T27 | 851-862 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T28 | 996-1000 | ChemicalEntity | denotes | 5-FU |
| T29 | 1005-1017 | ChemicalEntity | denotes | depsipeptide |
| T30 | 1047-1057 | DiseaseOrPhenotypicFeature | denotes | cell death |
| T31 | 1066-1083 | DiseaseOrPhenotypicFeature | denotes | apoptotic process |
| T32 | 1288-1320 | GeneOrGeneProduct | denotes | major histocompatibility complex |
| T33 | 1322-1325 | GeneOrGeneProduct | denotes | MHC |
| T34 | 1350-1369 | GeneOrGeneProduct | denotes | MHC protein complex |
| T35 | 1458-1462 | ChemicalEntity | denotes | 5-FU |
| T36 | 1467-1479 | ChemicalEntity | denotes | depsipeptide |
| T37 | 1538-1550 | GeneOrGeneProduct | denotes | MHC class II |
| T38 | 1708-1720 | GeneOrGeneProduct | denotes | MHC class II |
| T39 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T40 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
| T41 | 1804-1808 | ChemicalEntity | denotes | 5-FU |
| T42 | 1813-1825 | ChemicalEntity | denotes | depsipeptide |
| T43 | 1925-1943 | DiseaseOrPhenotypicFeature | denotes | cellular apoptosis |
| T44 | 2107-2114 | DiseaseOrPhenotypicFeature | denotes | induces |
| T45 | 2115-2120 | OrganismTaxon | denotes | human |
| T46 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
biored-valid-gpt-r-m
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-48 | ChemicalEntity | denotes | histone deacetylase inhibitor |
| T2 | 49-61 | ChemicalEntity | denotes | depsipeptide |
| T3 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T4 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T5 | 139-142 | GeneOrGeneProduct | denotes | p21 |
| T6 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T7 | 178-183 | OrganismTaxon | denotes | human |
| T8 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T9 | 197-204 | CellLine | denotes | HCT-116 |
| T10 | 248-285 | ChemicalEntity | denotes | histone deacetylase (HDAC) inhibitors |
| T11 | 437-449 | ChemicalEntity | denotes | depsipeptide |
| T12 | 454-458 | GeneOrGeneProduct | denotes | HDAC |
| T13 | 508-522 | ChemicalEntity | denotes | 5-fluorouracil |
| T14 | 524-528 | ChemicalEntity | denotes | 5-FU |
| T15 | 535-540 | OrganismTaxon | denotes | human |
| T16 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T17 | 571-578 | CellLine | denotes | HCT-116 |
| T18 | 580-584 | CellLine | denotes | HT29 |
| T19 | 590-594 | CellLine | denotes | SW48 |
| T20 | 700-704 | ChemicalEntity | denotes | 5-FU |
| T21 | 724-736 | ChemicalEntity | denotes | depsipeptide |
| T22 | 802-813 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T23 | 821-825 | ChemicalEntity | denotes | 5-FU |
| T24 | 939-943 | ChemicalEntity | denotes | 5-FU |
| T25 | 947-959 | ChemicalEntity | denotes | depsipeptide |
| T26 | 996-1000 | ChemicalEntity | denotes | 5-FU |
| T27 | 1005-1017 | ChemicalEntity | denotes | depsipeptide |
| T28 | 1139-1150 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T29 | 1250-1257 | ChemicalEntity | denotes | peptide |
| T30 | 1261-1275 | ChemicalEntity | denotes | polysaccharide |
| T31 | 1322-1325 | GeneOrGeneProduct | denotes | MHC |
| T32 | 1458-1462 | ChemicalEntity | denotes | 5-FU |
| T33 | 1467-1479 | ChemicalEntity | denotes | depsipeptide |
| T34 | 1538-1550 | GeneOrGeneProduct | denotes | MHC class II |
| T35 | 1708-1720 | GeneOrGeneProduct | denotes | MHC class II |
| T36 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T37 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
| T38 | 1804-1808 | ChemicalEntity | denotes | 5-FU |
| T39 | 1813-1825 | ChemicalEntity | denotes | depsipeptide |
| T40 | 1897-1909 | GeneOrGeneProduct | denotes | MHC class II |
| T41 | 1974-1986 | ChemicalEntity | denotes | depsipeptide |
| T42 | 1991-1995 | ChemicalEntity | denotes | 5-FU |
| T43 | 2085-2089 | ChemicalEntity | denotes | 5-FU |
| T44 | 2094-2106 | ChemicalEntity | denotes | depsipeptide |
| T45 | 2115-2120 | OrganismTaxon | denotes | human |
| T46 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T47 | 2193-2205 | GeneOrGeneProduct | denotes | MHC class II |
biored-valid-gemini-r-m
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-48 | ChemicalEntity | denotes | histone deacetylase inhibitor |
| T2 | 49-61 | ChemicalEntity | denotes | depsipeptide |
| T3 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T4 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T5 | 139-142 | GeneOrGeneProduct | denotes | p21 |
| T6 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T7 | 178-183 | OrganismTaxon | denotes | human |
| T8 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T9 | 197-204 | CellLine | denotes | HCT-116 |
| T10 | 248-285 | ChemicalEntity | denotes | histone deacetylase (HDAC) inhibitors |
| T11 | 437-449 | ChemicalEntity | denotes | depsipeptide |
| T12 | 454-468 | ChemicalEntity | denotes | HDAC inhibitor |
| T13 | 508-529 | ChemicalEntity | denotes | 5-fluorouracil (5-FU) |
| T14 | 535-540 | OrganismTaxon | denotes | human |
| T15 | 541-553 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T16 | 571-578 | CellLine | denotes | HCT-116 |
| T17 | 580-584 | CellLine | denotes | HT29 |
| T18 | 590-594 | CellLine | denotes | SW48 |
| T19 | 700-704 | ChemicalEntity | denotes | 5-FU |
| T20 | 724-736 | ChemicalEntity | denotes | depsipeptide |
| T21 | 802-813 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T22 | 821-825 | ChemicalEntity | denotes | 5-FU |
| T23 | 851-862 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T24 | 947-959 | ChemicalEntity | denotes | depsipeptide |
| T25 | 996-1000 | ChemicalEntity | denotes | 5-FU |
| T26 | 1005-1017 | ChemicalEntity | denotes | depsipeptide |
| T27 | 1047-1057 | DiseaseOrPhenotypicFeature | denotes | cell death |
| T28 | 1288-1332 | GeneOrGeneProduct | denotes | major histocompatibility complex (MHC) class |
| T29 | 1350-1369 | GeneOrGeneProduct | denotes | MHC protein complex |
| T30 | 1458-1462 | ChemicalEntity | denotes | 5-FU |
| T31 | 1467-1479 | ChemicalEntity | denotes | depsipeptide |
| T32 | 1538-1550 | GeneOrGeneProduct | denotes | MHC class II |
| T33 | 1708-1720 | GeneOrGeneProduct | denotes | MHC class II |
| T34 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T35 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |
| T36 | 1804-1808 | ChemicalEntity | denotes | 5-FU |
| T37 | 1813-1825 | ChemicalEntity | denotes | depsipeptide |
| T38 | 1897-1909 | GeneOrGeneProduct | denotes | MHC class II |
| T39 | 1934-1943 | DiseaseOrPhenotypicFeature | denotes | apoptosis |
| T40 | 2115-2120 | OrganismTaxon | denotes | human |
| T41 | 2121-2133 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
biored-valid-deepseek-r-m
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 19-38 | GeneOrGeneProduct | denotes | histone deacetylase |
| T2 | 49-61 | ChemicalEntity | denotes | depsipeptide |
| T3 | 66-80 | ChemicalEntity | denotes | 5-fluorouracil |
| T4 | 93-134 | GeneOrGeneProduct | denotes | major histocompatibility complex class II |
| T5 | 139-142 | GeneOrGeneProduct | denotes | p21 |
| T6 | 163-174 | GeneOrGeneProduct | denotes | caspase-3/7 |
| T7 | 178-183 | OrganismTaxon | denotes | human |
| T8 | 184-196 | DiseaseOrPhenotypicFeature | denotes | colon cancer |
| T9 | 197-204 | CellLine | denotes | HCT-116 |
| T10 | 269-273 | GeneOrGeneProduct | denotes | HDAC |
| T11 | 437-449 | ChemicalEntity | denotes | depsipeptide |
| T12 | 454-458 | GeneOrGeneProduct | denotes | HDAC |
| T13 | 490-495 | DiseaseOrPhenotypicFeature | denotes | tumor |
| T14 | 524-528 | ChemicalEntity | denotes | 5-FU |
| T15 | 547-553 | DiseaseOrPhenotypicFeature | denotes | cancer |
| T16 | 580-584 | CellLine | denotes | HT29 |
| T17 | 590-594 | CellLine | denotes | SW48 |
| T18 | 700-704 | ChemicalEntity | denotes | 5-FU |
| T19 | 724-736 | ChemicalEntity | denotes | depsipeptide |
| T20 | 939-943 | ChemicalEntity | denotes | 5-FU |
| T21 | 947-959 | ChemicalEntity | denotes | depsipeptide |
| T22 | 1538-1550 | GeneOrGeneProduct | denotes | MHC class II |
| T23 | 1764-1768 | GeneOrGeneProduct | denotes | PCAF |
| T24 | 1773-1778 | GeneOrGeneProduct | denotes | CIITA |