> top > docs > PubMed:27195813 > spans > 187-1990 > annotations

PubMed:27195813 / 187-1990 JSONTXT

Annnotations TAB JSON ListView MergeView

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 826-832 funRiceGene:361 denotes stress
M_1 963-969 funRiceGene:361 denotes stress
M_2 1053-1059 funRiceGene:361 denotes stress
M_3 1088-1094 funRiceGene:361 denotes stress
M_4 1137-1143 funRiceGene:361 denotes stress
M_6 259-268 funRiceGene:214 denotes tolerance
M_7 1324-1333 funRiceGene:214 denotes tolerance
M_8 344-353 funRiceGene:507 denotes seedlings
M_9 974-981 funRiceGene:445 denotes defence
M_10 177-181 WTO:0000152 denotes heat
M_12 1417-1421 PO:0025034, funRiceGene:469 denotes leaf
M_13 1410-1421 xzyao:12249 denotes mature leaf
M_14 818-832 funRiceGene:22, xzyao:11632 denotes drought stress
M_15 1129-1143 funRiceGene:22, xzyao:11632 denotes drought stress
M_16 1316-1333 TO:0000276, funRiceGene:56, xzyao:15993 denotes drought tolerance
M_17 974-990 funRiceGene:426, xzyao:10587 denotes defence response
M_18 446-453 WTO:0000218, funRiceGene:356 denotes drought
M_19 818-825 WTO:0000218, funRiceGene:356 denotes drought
M_20 1129-1136 WTO:0000218, funRiceGene:356 denotes drought
M_21 1316-1323 WTO:0000218, funRiceGene:356 denotes drought
M_22 1507-1514 WTO:0000218, funRiceGene:356 denotes drought
M_23 1526-1533 WTO:0000218, funRiceGene:356 denotes drought
M_26 193-197 hunflair:NA:Species denotes rice
M_27 1284-1288 hunflair:NA:Species denotes rice
M_29 1180-1191 hunflair:NA:Chemical denotes chlorophyll
M_31 0-14 hunflair:NA:Gene denotes ClpD1 protease
M_33 296-303 hunflair:NA:Gene denotes IAC1131
M_34 868-875 hunflair:NA:Gene denotes IAC1131
M_35 1355-1369 pubtator:MESH:D014869:Disease denotes water deficits
M_36 1180-1191 pubtator:MESH:D002734:Chemical denotes chlorophyll
M_39 193-197 pubtator:4530:Species denotes rice
M_40 1284-1288 pubtator:4530:Species denotes rice
M_42 28-32 pubtator:4530:Species denotes Rice

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 0-5 http://identifiers.org/oryzabase.gene/8950 denotes ClpD1
T2 699-701 http://identifiers.org/oryzabase.gene/2945 denotes GO
T3 1798-1803 http://identifiers.org/oryzabase.gene/8950 denotes ClpD1
T33133 0-5 http://identifiers.org/rapdb.locus/Os02g0526400 denotes ClpD1
T1869 699-701 http://identifiers.org/rapdb.locus/Os03g0790600 denotes GO
T12478 1798-1803 http://identifiers.org/rapdb.locus/Os02g0526400 denotes ClpD1

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 193-207 xzyao:4696 denotes rice cultivars
M_1 818-843 xzyao:7744 denotes drought stress resistance
M_2 833-843 funRiceGene:228 denotes resistance
M_3 1053-1069 xzyao:18351 denotes stress responses
M_5 974-981 funRiceGene:445 denotes defence
M_7 499-512 xzyao:19228 denotes Mature leaves
M_9 974-990 funRiceGene:426, xzyao:40974 denotes defence response
M_10 684-697 xzyao:3712 denotes Gene Ontology
M_11 818-832 funRiceGene:22, xzyao:11796 denotes drought stress
M_12 1129-1143 funRiceGene:22, xzyao:11796 denotes drought stress
M_13 177-181 WTO:0000152 denotes heat
M_16 1417-1421 PO:0025034, funRiceGene:469 denotes leaf
M_17 826-843 xzyao:8041 denotes stress resistance
M_18 1095-1111 xzyao:11659 denotes tolerant variety
M_19 189-197 xzyao:34142 denotes Two rice
M_20 1280-1288 xzyao:34142 denotes two rice
M_21 826-832 funRiceGene:361 denotes stress
M_22 963-969 funRiceGene:361 denotes stress
M_23 1053-1059 funRiceGene:361 denotes stress
M_24 1088-1094 funRiceGene:361 denotes stress
M_25 1137-1143 funRiceGene:361 denotes stress
M_27 344-353 funRiceGene:507 denotes seedlings
M_31 1316-1333 TO:0000276, funRiceGene:56, xzyao:34997 denotes drought tolerance
M_33 272-279 WTO:0000218, funRiceGene:356 denotes drought
M_34 446-453 WTO:0000218, funRiceGene:356 denotes drought
M_35 818-825 WTO:0000218, funRiceGene:356 denotes drought
M_36 1129-1136 WTO:0000218, funRiceGene:356 denotes drought
M_37 1316-1323 WTO:0000218, funRiceGene:356 denotes drought
M_38 1507-1514 WTO:0000218, funRiceGene:356 denotes drought
M_39 1526-1533 WTO:0000218, funRiceGene:356 denotes drought
M_41 1748-1761 xzyao:11465 denotes water deficit
M_42 818-833 funRiceGene:411 denotes drought stress
M_43 1129-1144 funRiceGene:411 denotes drought stress
M_45 259-268 funRiceGene:214 denotes tolerance
M_46 1324-1333 funRiceGene:214 denotes tolerance
M_47 1180-1204 xzyao:43327 denotes chlorophyll biosynthesis
M_49 0-14 hunflair:NA:Gene denotes ClpD1 protease
M_51 1180-1191 hunflair:NA:Chemical denotes chlorophyll
M_54 296-303 hunflair:NA:Gene denotes IAC1131
M_55 868-875 hunflair:NA:Gene denotes IAC1131
M_57 193-197 hunflair:NA:Species denotes rice
M_58 1284-1288 hunflair:NA:Species denotes rice
M_60 28-32 pubtator:4530:Species denotes Rice
M_61 1355-1369 pubtator:MESH:D014869:Disease denotes water deficits
M_62 1180-1191 pubtator:MESH:D002734:Chemical denotes chlorophyll
M_65 193-197 pubtator:4530:Species denotes rice
M_66 1284-1288 pubtator:4530:Species denotes rice

sentences

Id Subject Object Predicate Lexical cue
T2 16-27 Sentence denotes UNLABELLED:
T3 28-99 Sentence denotes Rice is the major staple food for more than half of world's population.
T4 100-188 Sentence denotes As global climate changes, we are observing more floods, droughts and severe heat waves.
T5 189-329 Sentence denotes Two rice cultivars with contrasting genetic backgrounds and levels of tolerance to drought, Nipponbare and IAC1131, were used in this study.
T6 330-498 Sentence denotes Four-week-old seedlings of both cultivars were grown in large soil volumes and then exposed to moderate and extreme drought for 7days, followed by 3days of re-watering.
T7 499-683 Sentence denotes Mature leaves were harvested from plants from each treatment for protein extraction and subsequent shotgun proteomic analysis, with validation of selected proteins by western blotting.
T8 684-844 Sentence denotes Gene Ontology (GO) annotations of differentially expressed proteins provide insights into the metabolic pathways that are involved in drought stress resistance.
T9 845-1008 Sentence denotes Our data indicate that IAC1131 appears to be better able to cope with stressful conditions by upregulating a suite of stress and defence response related proteins.
T10 1009-1250 Sentence denotes Nipponbare, in contrast, lacks the range of stress responses shown by the more stress tolerant variety, and responds to drought stress by initiating a partial shutdown of chlorophyll biosynthesis in an apparent attempt to preserve resources.
T11 1251-1264 Sentence denotes SIGNIFICANCE:
T12 1265-1430 Sentence denotes In this study, two rice genotypes with contrasting drought tolerance were exposed to soil water deficits, and proteomic changes were observed in mature leaf laminae.
T13 1431-1569 Sentence denotes Plants were well watered and then switched to conditions of either moderate drought or extreme drought followed by three days of recovery.
T14 1570-1676 Sentence denotes Proteins were identified and quantified using both label-free and Tandem Mass Tag multiplexing approaches.
T15 1677-1762 Sentence denotes Several biochemical pathways were significantly altered in response to water deficit.
T2 16-27 Sentence denotes UNLABELLED:
T3 28-99 Sentence denotes Rice is the major staple food for more than half of world's population.
T4 100-188 Sentence denotes As global climate changes, we are observing more floods, droughts and severe heat waves.
T5 189-329 Sentence denotes Two rice cultivars with contrasting genetic backgrounds and levels of tolerance to drought, Nipponbare and IAC1131, were used in this study.
T6 330-498 Sentence denotes Four-week-old seedlings of both cultivars were grown in large soil volumes and then exposed to moderate and extreme drought for 7days, followed by 3days of re-watering.
T7 499-683 Sentence denotes Mature leaves were harvested from plants from each treatment for protein extraction and subsequent shotgun proteomic analysis, with validation of selected proteins by western blotting.
T8 684-844 Sentence denotes Gene Ontology (GO) annotations of differentially expressed proteins provide insights into the metabolic pathways that are involved in drought stress resistance.
T9 845-1008 Sentence denotes Our data indicate that IAC1131 appears to be better able to cope with stressful conditions by upregulating a suite of stress and defence response related proteins.
T10 1009-1250 Sentence denotes Nipponbare, in contrast, lacks the range of stress responses shown by the more stress tolerant variety, and responds to drought stress by initiating a partial shutdown of chlorophyll biosynthesis in an apparent attempt to preserve resources.
T11 1251-1264 Sentence denotes SIGNIFICANCE:
T12 1265-1430 Sentence denotes In this study, two rice genotypes with contrasting drought tolerance were exposed to soil water deficits, and proteomic changes were observed in mature leaf laminae.
T13 1431-1569 Sentence denotes Plants were well watered and then switched to conditions of either moderate drought or extreme drought followed by three days of recovery.
T14 1570-1676 Sentence denotes Proteins were identified and quantified using both label-free and Tandem Mass Tag multiplexing approaches.
T15 1677-1762 Sentence denotes Several biochemical pathways were significantly altered in response to water deficit.

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 1180-1191 hunflair:NA:Chemical denotes chlorophyll
M_2 296-303 hunflair:NA:Gene denotes IAC1131
M_3 868-875 hunflair:NA:Gene denotes IAC1131
M_5 193-197 hunflair:NA:Species denotes rice
M_6 1284-1288 hunflair:NA:Species denotes rice
M_8 0-14 hunflair:NA:Gene denotes ClpD1 protease

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 0-5 http://identifiers.org/oryzabase.gene/8950 denotes ClpD1
T2 486-488 http://identifiers.org/oryzabase.gene/8905 denotes re
T3 699-701 http://identifiers.org/oryzabase.gene/2945 denotes GO
T4 1798-1803 http://identifiers.org/oryzabase.gene/8950 denotes ClpD1
T44287 0-5 http://identifiers.org/ricegap/LOC_Os02g32520 denotes ClpD1
T42778 699-701 http://identifiers.org/ricegap/LOC_Os03g57670 denotes GO
T25093 699-701 http://identifiers.org/ricegap/LOC_Os03g57660 denotes GO
T43888 733-751 http://identifiers.org/ricegap/LOC_Os06g47230 denotes expressed proteins
T5 733-751 http://identifiers.org/ricegap/LOC_Os05g08980 denotes expressed proteins
T6 733-751 http://identifiers.org/ricegap/LOC_Os03g35920 denotes expressed proteins
T7 733-751 http://identifiers.org/ricegap/LOC_Os02g07240 denotes expressed proteins
T8 733-751 http://identifiers.org/ricegap/LOC_Os01g04080 denotes expressed proteins
T9 1798-1803 http://identifiers.org/ricegap/LOC_Os02g32520 denotes ClpD1
T10947 0-5 http://identifiers.org/rapdb.locus/Os02g0526400 denotes ClpD1
T52687 486-488 http://identifiers.org/rapdb.locus/Os04g0164900 denotes re
T35840 699-701 http://identifiers.org/rapdb.locus/Os03g0790600 denotes GO
T18633 733-751 http://identifiers.org/rapdb.locus/Os06g0686700 denotes expressed proteins
T9639 733-751 http://identifiers.org/rapdb.locus/Os05g0182700 denotes expressed proteins
T60790 733-751 http://identifiers.org/rapdb.locus/Os03g0558700 denotes expressed proteins
T15080 733-751 http://identifiers.org/rapdb.locus/Os02g0168900 denotes expressed proteins
T74095 733-751 http://identifiers.org/rapdb.locus/Os01g0132200 denotes expressed proteins
T20512 1798-1803 http://identifiers.org/rapdb.locus/Os02g0526400 denotes ClpD1
T69350 0-5 http://identifiers.org/uniprot/A3A7I6 denotes ClpD1
T31025 699-701 http://identifiers.org/uniprot/Q852M4 denotes GO
T78130 699-701 http://identifiers.org/refseq/NP_001120724.1 denotes GO
T75649 1798-1803 http://identifiers.org/uniprot/A3A7I6 denotes ClpD1
M_0 1180-1191 hunflair:NA:Chemical denotes chlorophyll
M_2 296-303 hunflair:NA:Gene denotes IAC1131
M_3 868-875 hunflair:NA:Gene denotes IAC1131
M_5 193-197 hunflair:NA:Species denotes rice
M_6 1284-1288 hunflair:NA:Species denotes rice
M_8 0-14 hunflair:NA:Gene denotes ClpD1 protease

OryzaGP

Id Subject Object Predicate Lexical cue
T1 0-5 gene denotes ClpD1

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T2 28-32 OrganismTaxon denotes Rice 4530
T3 193-197 OrganismTaxon denotes rice 4530
T4 1284-1288 OrganismTaxon denotes rice 4530
T5 1422-1429 OrganismTaxon denotes laminae 79514

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1422-1429 Body_part denotes laminae http://purl.obolibrary.org/obo/UBERON_0004529