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PubMed:26684240 / 643-865 JSONTXT

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LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
10980 9-17 DiseaseOrPhenotypicFeature denotes GEP-NETs MESH:C535650
10981 59-65 DiseaseOrPhenotypicFeature denotes cancer MESH:D009369
10982 90-94 GeneOrGeneProduct denotes TP53 NCBIGene:7157
10983 96-101 GeneOrGeneProduct denotes CNBD1 NCBIGene:168975
10984 103-106 GeneOrGeneProduct denotes RB1 NCBIGene:5925
10985 108-111 GeneOrGeneProduct denotes APC NCBIGene:324
10986 113-117 GeneOrGeneProduct denotes BCOR NCBIGene:54880
10987 119-123 GeneOrGeneProduct denotes BRAF NCBIGene:673
10988 125-131 GeneOrGeneProduct denotes CTNNB1 NCBIGene:1499
10989 133-137 GeneOrGeneProduct denotes EGFR NCBIGene:1956
10990 139-144 GeneOrGeneProduct denotes EP300 NCBIGene:2033
10991 146-151 GeneOrGeneProduct denotes ERBB3 NCBIGene:2065
10992 153-158 GeneOrGeneProduct denotes KDM6A NCBIGene:7403
10993 160-164 GeneOrGeneProduct denotes KRAS NCBIGene:3845
10994 166-169 GeneOrGeneProduct denotes MGA NCBIGene:23269
10995 171-175 GeneOrGeneProduct denotes MLL3 NCBIGene:58508
10996 177-181 GeneOrGeneProduct denotes PTEN NCBIGene:5728
10997 183-188 GeneOrGeneProduct denotes RASA1 NCBIGene:5921
10998 190-197 GeneOrGeneProduct denotes SMARCB1 NCBIGene:6598
10999 199-203 GeneOrGeneProduct denotes SPEN NCBIGene:23013
11000 205-212 GeneOrGeneProduct denotes TBC1D12 NCBIGene:23232
11001 218-221 GeneOrGeneProduct denotes VHL NCBIGene:7428

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T5 0-222 Sentence denotes Among 12 GEP-NETs, eight showed mutations of more than one cancer-related gene, including TP53, CNBD1, RB1, APC, BCOR, BRAF, CTNNB1, EGFR, EP300, ERBB3, KDM6A, KRAS, MGA, MLL3, PTEN, RASA1, SMARCB1, SPEN, TBC1D12, and VHL.

LitCoin_Mondo

Id Subject Object Predicate Lexical cue mondo_id
T1 59-65 DiseaseOrPhenotypicFeature denotes cancer 0004992

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T3 90-94 GeneOrGeneProduct denotes TP53
T4 96-101 GeneOrGeneProduct denotes CNBD1
T5 103-106 GeneOrGeneProduct denotes RB1
T6 113-117 GeneOrGeneProduct denotes BCOR
T7 119-123 GeneOrGeneProduct denotes BRAF
T8 125-131 GeneOrGeneProduct denotes CTNNB1
T9 133-137 GeneOrGeneProduct denotes EGFR
T10 139-144 GeneOrGeneProduct denotes EP300
T11 146-151 GeneOrGeneProduct denotes ERBB3
T12 153-158 GeneOrGeneProduct denotes KDM6A
T13 160-164 GeneOrGeneProduct denotes KRAS
T14 171-175 GeneOrGeneProduct denotes MLL3
T15 177-181 GeneOrGeneProduct denotes PTEN
T16 183-188 GeneOrGeneProduct denotes RASA1
T17 190-197 GeneOrGeneProduct denotes SMARCB1
T18 199-203 GeneOrGeneProduct denotes SPEN
T19 205-212 GeneOrGeneProduct denotes TBC1D12

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T19 13-17 GeneOrGeneProduct denotes NETs
T20 32-41 GeneOrGeneProduct denotes mutations
T21 90-94 GeneOrGeneProduct denotes TP53
T22 96-101 GeneOrGeneProduct denotes CNBD1
T23 103-106 GeneOrGeneProduct denotes RB1
T24 108-111 GeneOrGeneProduct denotes APC
T25 113-117 GeneOrGeneProduct denotes BCOR
T26 119-123 GeneOrGeneProduct denotes BRAF
T27 125-131 GeneOrGeneProduct denotes CTNNB1
T28 133-137 GeneOrGeneProduct denotes EGFR
T29 139-144 GeneOrGeneProduct denotes EP300
T30 146-151 GeneOrGeneProduct denotes ERBB3
T31 153-158 GeneOrGeneProduct denotes KDM6A
T32 160-164 GeneOrGeneProduct denotes KRAS
T33 171-175 GeneOrGeneProduct denotes MLL3
T34 177-181 GeneOrGeneProduct denotes PTEN
T35 183-188 GeneOrGeneProduct denotes RASA1
T36 190-197 GeneOrGeneProduct denotes SMARCB1
T37 199-203 GeneOrGeneProduct denotes SPEN
T38 205-212 GeneOrGeneProduct denotes TBC1D12

LitCoin-Disease-MeSH

Id Subject Object Predicate Lexical cue originalLabel
T3 59-65 DiseaseOrPhenotypicFeature denotes cancer D009369

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T2 90-94 GeneOrGeneProduct denotes TP53
T3 96-101 GeneOrGeneProduct denotes CNBD1
T4 103-106 GeneOrGeneProduct denotes RB1
T5 113-117 GeneOrGeneProduct denotes BCOR
T6 119-123 GeneOrGeneProduct denotes BRAF
T7 125-131 GeneOrGeneProduct denotes CTNNB1
T8 133-137 GeneOrGeneProduct denotes EGFR
T9 139-144 GeneOrGeneProduct denotes EP300
T10 146-151 GeneOrGeneProduct denotes ERBB3
T11 153-158 GeneOrGeneProduct denotes KDM6A
T12 160-164 GeneOrGeneProduct denotes KRAS
T13 171-175 GeneOrGeneProduct denotes MLL3
T14 177-181 GeneOrGeneProduct denotes PTEN
T15 183-188 GeneOrGeneProduct denotes RASA1
T16 190-197 GeneOrGeneProduct denotes SMARCB1
T17 199-203 GeneOrGeneProduct denotes SPEN
T18 205-212 GeneOrGeneProduct denotes TBC1D12

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T5 103-106 DiseaseOrPhenotypicFeature denotes RB1 0018160
T6 218-221 DiseaseOrPhenotypicFeature denotes VHL 0008667

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T6 9-17 DiseaseOrPhenotypicFeature denotes GEP-NETs DISEASE
T7 59-65 DiseaseOrPhenotypicFeature denotes cancer D009369

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T6 9-17 DiseaseOrPhenotypicFeature denotes GEP-NETs DISEASE
T7 59-65 DiseaseOrPhenotypicFeature denotes cancer D009369

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label
T18 205-212 GeneOrGeneProduct denotes TBC1D12
T17 199-203 GeneOrGeneProduct denotes SPEN
T16 190-197 GeneOrGeneProduct denotes SMARCB1
T15 183-188 GeneOrGeneProduct denotes RASA1
T14 177-181 GeneOrGeneProduct denotes PTEN
T13 171-175 GeneOrGeneProduct denotes MLL3
T12 160-164 GeneOrGeneProduct denotes KRAS
T11 153-158 GeneOrGeneProduct denotes KDM6A
T10 146-151 GeneOrGeneProduct denotes ERBB3
T9 139-144 GeneOrGeneProduct denotes EP300
T8 133-137 GeneOrGeneProduct denotes EGFR
T7 125-131 GeneOrGeneProduct denotes CTNNB1
T6 119-123 GeneOrGeneProduct denotes BRAF
T42858 113-117 GeneOrGeneProduct denotes BCOR
T4 103-106 GeneOrGeneProduct denotes RB1
T59666 96-101 GeneOrGeneProduct denotes CNBD1
T2 90-94 GeneOrGeneProduct denotes TP53
T84367 59-65 DiseaseOrPhenotypicFeature denotes cancer D009369
T64672 9-17 DiseaseOrPhenotypicFeature denotes GEP-NETs DISEASE