PubMed:26684240 / 1168-1482 JSONTXT

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LitCoin-entities

Id Subject Object Predicate Lexical cue db_id
11013 9-13 GeneOrGeneProduct denotes BRAF NCBIGene:673
11014 14-19 SequenceVariant denotes V600E DBSNP:rs113488022
11015 24-27 DiseaseOrPhenotypicFeature denotes NET MESH:D018358
11016 51-55 DiseaseOrPhenotypicFeature denotes NETs MESH:D018358
11017 72-76 GeneOrGeneProduct denotes BRAF NCBIGene:673
11018 77-82 SequenceVariant denotes G593S p.G593S
11019 87-90 DiseaseOrPhenotypicFeature denotes NET MESH:D018358
11020 163-171 DiseaseOrPhenotypicFeature denotes GEP-NETs MESH:C535650

LitCoin-sentences

Id Subject Object Predicate Lexical cue
T8 0-314 Sentence denotes We found BRAF V600E (G1 NET from rectum and two G3 NETs from colon) and BRAF G593S (G2 NET from pancreas) missense mutations (9.1%) in an independent cohort of 44 GEP-NETs from the rectum (n = 26), colon (n = 7), pancreas (n = 4), small intestine (n = 3), stomach (n = 3) and appendix (n = 1) by Sanger sequencing.

LitCoin-SeqVar

Id Subject Object Predicate Lexical cue
T3 14-19 SequenceVariant denotes V600E
T4 77-82 SequenceVariant denotes G593S

LitCoin-GeneOrGeneProduct-v2

Id Subject Object Predicate Lexical cue
T29 9-13 GeneOrGeneProduct denotes BRAF
T30 24-27 GeneOrGeneProduct denotes NET
T31 72-76 GeneOrGeneProduct denotes BRAF
T32 87-90 GeneOrGeneProduct denotes NET
T33 231-236 GeneOrGeneProduct denotes small

LitCoin-GeneOrGeneProduct-v0

Id Subject Object Predicate Lexical cue
T54 9-13 GeneOrGeneProduct denotes BRAF
T55 24-27 GeneOrGeneProduct denotes NET
T56 48-50 GeneOrGeneProduct denotes G3
T57 51-55 GeneOrGeneProduct denotes NETs
T58 72-76 GeneOrGeneProduct denotes BRAF
T59 87-90 GeneOrGeneProduct denotes NET
T60 106-114 GeneOrGeneProduct denotes missense
T61 115-124 GeneOrGeneProduct denotes mutations
T62 167-171 GeneOrGeneProduct denotes NETs
T63 189-195 GeneOrGeneProduct denotes n = 26
T64 231-236 GeneOrGeneProduct denotes small
T65 237-246 GeneOrGeneProduct denotes intestine

LitCoin-GeneOrGeneProduct-v3

Id Subject Object Predicate Lexical cue
T26 9-13 GeneOrGeneProduct denotes BRAF
T27 24-27 GeneOrGeneProduct denotes NET
T28 72-76 GeneOrGeneProduct denotes BRAF
T29 87-90 GeneOrGeneProduct denotes NET

LitCoin_Mondo_095

Id Subject Object Predicate Lexical cue mondo_id
T9 96-104 DiseaseOrPhenotypicFeature denotes pancreas 0021040
T10 213-221 DiseaseOrPhenotypicFeature denotes pancreas 0021040

LitCoin-MeSH-Disease-2

Id Subject Object Predicate Lexical cue ID:
T10 24-27 DiseaseOrPhenotypicFeature denotes NET DISEASE
T11 51-55 DiseaseOrPhenotypicFeature denotes NETs DISEASE
T12 87-90 DiseaseOrPhenotypicFeature denotes NET DISEASE
T13 163-171 DiseaseOrPhenotypicFeature denotes GEP-NETs DISEASE

LitCoin-MONDO_bioort2019

Id Subject Object Predicate Lexical cue #label
T10 24-27 DiseaseOrPhenotypicFeature denotes NET DISEASE
T11 51-55 DiseaseOrPhenotypicFeature denotes NETs DISEASE
T12 87-90 DiseaseOrPhenotypicFeature denotes NET DISEASE
T13 163-171 DiseaseOrPhenotypicFeature denotes GEP-NETs DISEASE

LitCoin-training-merged

Id Subject Object Predicate Lexical cue #label
T29 87-90 GeneOrGeneProduct denotes NET
T28 72-76 GeneOrGeneProduct denotes BRAF
T27 24-27 GeneOrGeneProduct denotes NET
T26 9-13 GeneOrGeneProduct denotes BRAF
T51763 163-171 DiseaseOrPhenotypicFeature denotes GEP-NETs DISEASE
T89093 87-90 DiseaseOrPhenotypicFeature denotes NET DISEASE
T17041 51-55 DiseaseOrPhenotypicFeature denotes NETs DISEASE
T54477 24-27 DiseaseOrPhenotypicFeature denotes NET DISEASE
T54782 77-82 SequenceVariant denotes G593S
T91746 14-19 SequenceVariant denotes V600E