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OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 1542-1555 http://identifiers.org/oryzabase.gene/8408 denotes abscisic acid
T50307 1542-1555 http://identifiers.org/ricegap/LOC_Os11g06720 denotes abscisic acid
T17339 1542-1555 http://identifiers.org/rapdb.locus/Os11g0167800 denotes abscisic acid
T14641 1542-1555 http://identifiers.org/uniprot/Q53JF7 denotes abscisic acid

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-97 Sentence denotes Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and rice.
T2 98-199 Sentence denotes BACKGROUND: WRKY III genes have significant functions in regulating plant development and resistance.
T3 200-456 Sentence denotes In plant, WRKY gene family has been studied in many species, however, there still lack a comprehensive analysis of WRKY III genes in the woody plant species poplar, three representative lineages of flowering plant species are incorporated in most analyses:
T4 457-606 Sentence denotes Arabidopsis (a model plant for annual herbaceous dicots), grape (one model plant for perennial dicots) and Oryza sativa (a model plant for monocots).
T5 607-615 Sentence denotes RESULTS:
T6 616-799 Sentence denotes In this study, we identified 10, 6, 13 and 28 WRKY III genes in the genomes of Populus trichocarpa, grape (Vitis vinifera), Arabidopsis thaliana and rice (Oryza sativa), respectively.
T7 800-892 Sentence denotes Phylogenetic analysis revealed that the WRKY III proteins could be divided into four clades.
T8 893-1026 Sentence denotes By microsynteny analysis, we found that the duplicated regions were more conserved between poplar and grape than Arabidopsis or rice.
T9 1027-1189 Sentence denotes We dated their duplications by Ks analysis of Populus WRKY III genes and demonstrated that all the blocks were formed after the divergence of monocots and dicots.
T10 1190-1407 Sentence denotes Strong purifying selection has played a key role in the maintenance of WRKY III genes in Populus. Tissue expression analysis of the WRKY III genes in Populus revealed that five were most highly expressed in the xylem.
T11 1408-1632 Sentence denotes We also performed quantitative real-time reverse transcription PCR analysis of WRKY III genes in Populus treated with salicylic acid, abscisic acid and polyethylene glycol to explore their stress-related expression patterns.
T12 1633-1645 Sentence denotes CONCLUSIONS:
T13 1646-1824 Sentence denotes This study highlighted the duplication and diversification of the WRKY III gene family in Populus and provided a comprehensive analysis of this gene family in the Populus genome.
T14 1825-1939 Sentence denotes Our results indicated that the majority of WRKY III genes of Populus was expanded by large-scale gene duplication.
T15 1940-2137 Sentence denotes The expression pattern of PtrWRKYIII gene identified that these genes play important roles in the xylem during poplar growth and development, and may play crucial role in defense to drought stress.
T16 2138-2290 Sentence denotes Our results presented here may aid in the selection of appropriate candidate genes for further characterization of their biological functions in poplar.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-97 Sentence denotes Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and rice.
T2 98-199 Sentence denotes BACKGROUND: WRKY III genes have significant functions in regulating plant development and resistance.
T3 200-456 Sentence denotes In plant, WRKY gene family has been studied in many species, however, there still lack a comprehensive analysis of WRKY III genes in the woody plant species poplar, three representative lineages of flowering plant species are incorporated in most analyses:
T4 457-606 Sentence denotes Arabidopsis (a model plant for annual herbaceous dicots), grape (one model plant for perennial dicots) and Oryza sativa (a model plant for monocots).
T5 607-615 Sentence denotes RESULTS:
T6 616-799 Sentence denotes In this study, we identified 10, 6, 13 and 28 WRKY III genes in the genomes of Populus trichocarpa, grape (Vitis vinifera), Arabidopsis thaliana and rice (Oryza sativa), respectively.
T7 800-892 Sentence denotes Phylogenetic analysis revealed that the WRKY III proteins could be divided into four clades.
T8 893-1026 Sentence denotes By microsynteny analysis, we found that the duplicated regions were more conserved between poplar and grape than Arabidopsis or rice.
T9 1027-1189 Sentence denotes We dated their duplications by Ks analysis of Populus WRKY III genes and demonstrated that all the blocks were formed after the divergence of monocots and dicots.
T10 1190-1407 Sentence denotes Strong purifying selection has played a key role in the maintenance of WRKY III genes in Populus. Tissue expression analysis of the WRKY III genes in Populus revealed that five were most highly expressed in the xylem.
T11 1408-1632 Sentence denotes We also performed quantitative real-time reverse transcription PCR analysis of WRKY III genes in Populus treated with salicylic acid, abscisic acid and polyethylene glycol to explore their stress-related expression patterns.
T12 1633-1645 Sentence denotes CONCLUSIONS:
T13 1646-1824 Sentence denotes This study highlighted the duplication and diversification of the WRKY III gene family in Populus and provided a comprehensive analysis of this gene family in the Populus genome.
T14 1825-1939 Sentence denotes Our results indicated that the majority of WRKY III genes of Populus was expanded by large-scale gene duplication.
T15 1940-2137 Sentence denotes The expression pattern of PtrWRKYIII gene identified that these genes play important roles in the xylem during poplar growth and development, and may play crucial role in defense to drought stress.
T16 2138-2290 Sentence denotes Our results presented here may aid in the selection of appropriate candidate genes for further characterization of their biological functions in poplar.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-97 Sentence denotes Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and rice.
T2 98-199 Sentence denotes BACKGROUND: WRKY III genes have significant functions in regulating plant development and resistance.
T3 200-456 Sentence denotes In plant, WRKY gene family has been studied in many species, however, there still lack a comprehensive analysis of WRKY III genes in the woody plant species poplar, three representative lineages of flowering plant species are incorporated in most analyses:
T4 457-606 Sentence denotes Arabidopsis (a model plant for annual herbaceous dicots), grape (one model plant for perennial dicots) and Oryza sativa (a model plant for monocots).
T5 607-615 Sentence denotes RESULTS:
T6 616-799 Sentence denotes In this study, we identified 10, 6, 13 and 28 WRKY III genes in the genomes of Populus trichocarpa, grape (Vitis vinifera), Arabidopsis thaliana and rice (Oryza sativa), respectively.
T7 800-892 Sentence denotes Phylogenetic analysis revealed that the WRKY III proteins could be divided into four clades.
T8 893-1026 Sentence denotes By microsynteny analysis, we found that the duplicated regions were more conserved between poplar and grape than Arabidopsis or rice.
T9 1027-1189 Sentence denotes We dated their duplications by Ks analysis of Populus WRKY III genes and demonstrated that all the blocks were formed after the divergence of monocots and dicots.
T10 1190-1407 Sentence denotes Strong purifying selection has played a key role in the maintenance of WRKY III genes in Populus. Tissue expression analysis of the WRKY III genes in Populus revealed that five were most highly expressed in the xylem.
T11 1408-1632 Sentence denotes We also performed quantitative real-time reverse transcription PCR analysis of WRKY III genes in Populus treated with salicylic acid, abscisic acid and polyethylene glycol to explore their stress-related expression patterns.
T12 1633-1645 Sentence denotes CONCLUSIONS:
T13 1646-1824 Sentence denotes This study highlighted the duplication and diversification of the WRKY III gene family in Populus and provided a comprehensive analysis of this gene family in the Populus genome.
T14 1825-1939 Sentence denotes Our results indicated that the majority of WRKY III genes of Populus was expanded by large-scale gene duplication.
T15 1940-2137 Sentence denotes The expression pattern of PtrWRKYIII gene identified that these genes play important roles in the xylem during poplar growth and development, and may play crucial role in defense to drought stress.
T16 2138-2290 Sentence denotes Our results presented here may aid in the selection of appropriate candidate genes for further characterization of their biological functions in poplar.

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-97 Sentence denotes Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and rice.
T2 98-199 Sentence denotes BACKGROUND: WRKY III genes have significant functions in regulating plant development and resistance.
T3 200-456 Sentence denotes In plant, WRKY gene family has been studied in many species, however, there still lack a comprehensive analysis of WRKY III genes in the woody plant species poplar, three representative lineages of flowering plant species are incorporated in most analyses:
T4 457-606 Sentence denotes Arabidopsis (a model plant for annual herbaceous dicots), grape (one model plant for perennial dicots) and Oryza sativa (a model plant for monocots).
T5 607-615 Sentence denotes RESULTS:
T6 616-799 Sentence denotes In this study, we identified 10, 6, 13 and 28 WRKY III genes in the genomes of Populus trichocarpa, grape (Vitis vinifera), Arabidopsis thaliana and rice (Oryza sativa), respectively.
T7 800-892 Sentence denotes Phylogenetic analysis revealed that the WRKY III proteins could be divided into four clades.
T8 893-1026 Sentence denotes By microsynteny analysis, we found that the duplicated regions were more conserved between poplar and grape than Arabidopsis or rice.
T9 1027-1189 Sentence denotes We dated their duplications by Ks analysis of Populus WRKY III genes and demonstrated that all the blocks were formed after the divergence of monocots and dicots.
T10 1190-1407 Sentence denotes Strong purifying selection has played a key role in the maintenance of WRKY III genes in Populus. Tissue expression analysis of the WRKY III genes in Populus revealed that five were most highly expressed in the xylem.
T11 1408-1632 Sentence denotes We also performed quantitative real-time reverse transcription PCR analysis of WRKY III genes in Populus treated with salicylic acid, abscisic acid and polyethylene glycol to explore their stress-related expression patterns.
T12 1633-1645 Sentence denotes CONCLUSIONS:
T13 1646-1824 Sentence denotes This study highlighted the duplication and diversification of the WRKY III gene family in Populus and provided a comprehensive analysis of this gene family in the Populus genome.
T14 1825-1939 Sentence denotes Our results indicated that the majority of WRKY III genes of Populus was expanded by large-scale gene duplication.
T15 1940-2137 Sentence denotes The expression pattern of PtrWRKYIII gene identified that these genes play important roles in the xylem during poplar growth and development, and may play crucial role in defense to drought stress.
T16 2138-2290 Sentence denotes Our results presented here may aid in the selection of appropriate candidate genes for further characterization of their biological functions in poplar.