PubMed:26088564 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"http://pubannotation.org/docs/sourcedb/PubMed/sourceid/26088564","sourcedb":"PubMed","sourceid":"26088564","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/26088564","text":"Structural glycobiology of human α1-acid glycoprotein and its implications for pharmacokinetics and inflammation.\nHuman α1-acid glycoprotein (AGP) is an abundant human plasma glycoprotein that may be N-glycosylated at five positions. AGP plays important roles on pharmacokinetics and can rise up to 5-fold in inflammatory events. In such events, the glycan chains attached to Asn54, Asn75 and Asn85 may become fucosylated, originating a sialyl-Lewis X epitope. This epitope, in turn, can bind selectin proteins. Such interplay is important for immunomodulation. While the X-ray structure of unglycosylated AGP has been reported, the absence of the glycan chains hampered the further insights into its structural biology and, ultimately, into its biological function. Thus, the current work intends to contribute in the characterization of the structural glycobiology and function of AGP by building a structural model of its fully glycosylated form, taking into account the different glycoforms that are found in vivo. The obtained data points to the absence of a major influence of glycosylation on AGP's secondary structure, in agreement with crystallography observations. However, the glycan chains seem able to interfere with the protein dynamics, mainly at the AGP-ligand-binding site, indicating a possible role in its complexation to drugs and other bioactive compounds. By examining the influence of fucosylation on AGP structure and binding to selectins, it is proposed that the latter may bind to glycan chains linked to Asn54 and Asn75, and that this binding may involve other glycans, such as the one attached to Asn15. These results point to an increased participation of carbohydrates on the observed AGP roles in pharmacokinetics and inflammation.","tracks":[{"project":"GlyCosmos6-UBERON","denotations":[{"id":"T1","span":{"begin":168,"end":174},"obj":"Body_part"}],"attributes":[{"id":"A1","pred":"uberon_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/UBERON_0001969"},{"subj":"T1","pred":"source","obj":"GlyCosmos6-UBERON"}]},{"project":"Glycan-Motif","denotations":[{"id":"T1","span":{"begin":437,"end":451},"obj":"https://glytoucan.org/Structures/Glycans/G00054MO"}],"attributes":[{"subj":"T1","pred":"source","obj":"Glycan-Motif"}]},{"project":"Inflammaging","denotations":[{"id":"T1","span":{"begin":0,"end":113},"obj":"Sentence"},{"id":"T2","span":{"begin":114,"end":233},"obj":"Sentence"},{"id":"T3","span":{"begin":234,"end":329},"obj":"Sentence"},{"id":"T4","span":{"begin":330,"end":460},"obj":"Sentence"},{"id":"T5","span":{"begin":461,"end":511},"obj":"Sentence"},{"id":"T6","span":{"begin":512,"end":561},"obj":"Sentence"},{"id":"T7","span":{"begin":562,"end":766},"obj":"Sentence"},{"id":"T8","span":{"begin":767,"end":1018},"obj":"Sentence"},{"id":"T9","span":{"begin":1019,"end":1174},"obj":"Sentence"},{"id":"T10","span":{"begin":1175,"end":1377},"obj":"Sentence"},{"id":"T11","span":{"begin":1378,"end":1631},"obj":"Sentence"},{"id":"T12","span":{"begin":1632,"end":1762},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":113},"obj":"Sentence"},{"id":"T2","span":{"begin":114,"end":233},"obj":"Sentence"},{"id":"T3","span":{"begin":234,"end":329},"obj":"Sentence"},{"id":"T4","span":{"begin":330,"end":460},"obj":"Sentence"},{"id":"T5","span":{"begin":461,"end":511},"obj":"Sentence"},{"id":"T6","span":{"begin":512,"end":561},"obj":"Sentence"},{"id":"T7","span":{"begin":562,"end":766},"obj":"Sentence"},{"id":"T8","span":{"begin":767,"end":1018},"obj":"Sentence"},{"id":"T9","span":{"begin":1019,"end":1174},"obj":"Sentence"},{"id":"T10","span":{"begin":1175,"end":1377},"obj":"Sentence"},{"id":"T11","span":{"begin":1378,"end":1631},"obj":"Sentence"},{"id":"T12","span":{"begin":1632,"end":1762},"obj":"Sentence"}],"attributes":[{"subj":"T1","pred":"source","obj":"Inflammaging"},{"subj":"T2","pred":"source","obj":"Inflammaging"},{"subj":"T3","pred":"source","obj":"Inflammaging"},{"subj":"T4","pred":"source","obj":"Inflammaging"},{"subj":"T5","pred":"source","obj":"Inflammaging"},{"subj":"T6","pred":"source","obj":"Inflammaging"},{"subj":"T7","pred":"source","obj":"Inflammaging"},{"subj":"T8","pred":"source","obj":"Inflammaging"},{"subj":"T9","pred":"source","obj":"Inflammaging"},{"subj":"T10","pred":"source","obj":"Inflammaging"},{"subj":"T11","pred":"source","obj":"Inflammaging"},{"subj":"T12","pred":"source","obj":"Inflammaging"},{"subj":"T1","pred":"source","obj":"Inflammaging"},{"subj":"T2","pred":"source","obj":"Inflammaging"},{"subj":"T3","pred":"source","obj":"Inflammaging"},{"subj":"T4","pred":"source","obj":"Inflammaging"},{"subj":"T5","pred":"source","obj":"Inflammaging"},{"subj":"T6","pred":"source","obj":"Inflammaging"},{"subj":"T7","pred":"source","obj":"Inflammaging"},{"subj":"T8","pred":"source","obj":"Inflammaging"},{"subj":"T9","pred":"source","obj":"Inflammaging"},{"subj":"T10","pred":"source","obj":"Inflammaging"},{"subj":"T11","pred":"source","obj":"Inflammaging"},{"subj":"T12","pred":"source","obj":"Inflammaging"}]},{"project":"GlyCosmos6-Glycan-Motif-Image","denotations":[{"id":"T1","span":{"begin":437,"end":451},"obj":"Glycan_Motif"}],"attributes":[{"id":"A1","pred":"image","subj":"T1","obj":"https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00054MO"},{"subj":"T1","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Image"}]},{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":113},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":114,"end":233},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":234,"end":329},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":330,"end":460},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":461,"end":511},"obj":"Sentence"},{"id":"TextSentencer_T6","span":{"begin":512,"end":561},"obj":"Sentence"},{"id":"TextSentencer_T7","span":{"begin":562,"end":766},"obj":"Sentence"},{"id":"TextSentencer_T8","span":{"begin":767,"end":1018},"obj":"Sentence"},{"id":"TextSentencer_T9","span":{"begin":1019,"end":1174},"obj":"Sentence"},{"id":"TextSentencer_T10","span":{"begin":1175,"end":1377},"obj":"Sentence"},{"id":"TextSentencer_T11","span":{"begin":1378,"end":1631},"obj":"Sentence"},{"id":"TextSentencer_T12","span":{"begin":1632,"end":1762},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":113},"obj":"Sentence"},{"id":"T2","span":{"begin":114,"end":233},"obj":"Sentence"},{"id":"T3","span":{"begin":234,"end":329},"obj":"Sentence"},{"id":"T4","span":{"begin":330,"end":460},"obj":"Sentence"},{"id":"T5","span":{"begin":461,"end":511},"obj":"Sentence"},{"id":"T6","span":{"begin":512,"end":561},"obj":"Sentence"},{"id":"T7","span":{"begin":562,"end":766},"obj":"Sentence"},{"id":"T8","span":{"begin":767,"end":1018},"obj":"Sentence"},{"id":"T9","span":{"begin":1019,"end":1174},"obj":"Sentence"},{"id":"T10","span":{"begin":1175,"end":1377},"obj":"Sentence"},{"id":"T11","span":{"begin":1378,"end":1631},"obj":"Sentence"},{"id":"T12","span":{"begin":1632,"end":1762},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":113},"obj":"Sentence"},{"id":"T2","span":{"begin":114,"end":233},"obj":"Sentence"},{"id":"T3","span":{"begin":234,"end":329},"obj":"Sentence"},{"id":"T4","span":{"begin":330,"end":460},"obj":"Sentence"},{"id":"T5","span":{"begin":461,"end":511},"obj":"Sentence"},{"id":"T6","span":{"begin":512,"end":561},"obj":"Sentence"},{"id":"T7","span":{"begin":562,"end":766},"obj":"Sentence"},{"id":"T8","span":{"begin":767,"end":1018},"obj":"Sentence"},{"id":"T9","span":{"begin":1019,"end":1174},"obj":"Sentence"},{"id":"T10","span":{"begin":1175,"end":1377},"obj":"Sentence"},{"id":"T11","span":{"begin":1378,"end":1631},"obj":"Sentence"},{"id":"T12","span":{"begin":1632,"end":1762},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T1","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T2","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T3","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T4","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T5","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T6","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T7","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T8","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T9","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T10","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T11","pred":"source","obj":"sentences"},{"subj":"TextSentencer_T12","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"},{"subj":"T10","pred":"source","obj":"sentences"},{"subj":"T11","pred":"source","obj":"sentences"},{"subj":"T12","pred":"source","obj":"sentences"},{"subj":"T1","pred":"source","obj":"sentences"},{"subj":"T2","pred":"source","obj":"sentences"},{"subj":"T3","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T5","pred":"source","obj":"sentences"},{"subj":"T6","pred":"source","obj":"sentences"},{"subj":"T7","pred":"source","obj":"sentences"},{"subj":"T8","pred":"source","obj":"sentences"},{"subj":"T9","pred":"source","obj":"sentences"},{"subj":"T10","pred":"source","obj":"sentences"},{"subj":"T11","pred":"source","obj":"sentences"},{"subj":"T12","pred":"source","obj":"sentences"}]},{"project":"GlyCosmos6-Glycan-Motif-Structure","denotations":[{"id":"T1","span":{"begin":437,"end":451},"obj":"https://glytoucan.org/Structures/Glycans/G00054MO"},{"id":"T2","span":{"begin":444,"end":451},"obj":"https://glytoucan.org/Structures/Glycans/G00051MO"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Structure"},{"subj":"T2","pred":"source","obj":"GlyCosmos6-Glycan-Motif-Structure"}]},{"project":"Glycosmos6-GlycoEpitope","denotations":[{"id":"T1","span":{"begin":437,"end":451},"obj":"http://www.glycoepitope.jp/epitopes/EP0012"},{"id":"T2","span":{"begin":444,"end":451},"obj":"http://www.glycoepitope.jp/epitopes/EP0011"}],"attributes":[{"subj":"T1","pred":"source","obj":"Glycosmos6-GlycoEpitope"},{"subj":"T2","pred":"source","obj":"Glycosmos6-GlycoEpitope"}]},{"project":"mondo_disease","denotations":[{"id":"T1","span":{"begin":100,"end":112},"obj":"Disease"},{"id":"T2","span":{"begin":1749,"end":1761},"obj":"Disease"}],"attributes":[{"id":"A1","pred":"mondo_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/MONDO_0021166"},{"id":"A2","pred":"mondo_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MONDO_0021166"},{"subj":"T1","pred":"source","obj":"mondo_disease"},{"subj":"T2","pred":"source","obj":"mondo_disease"}]},{"project":"GlycoBiology-FMA","denotations":[{"id":"_T1","span":{"begin":41,"end":53},"obj":"FMAID:62925"},{"id":"_T2","span":{"begin":41,"end":53},"obj":"FMAID:167256"},{"id":"_T3","span":{"begin":128,"end":140},"obj":"FMAID:167256"},{"id":"_T4","span":{"begin":128,"end":140},"obj":"FMAID:62925"},{"id":"_T5","span":{"begin":168,"end":174},"obj":"FMAID:162307"},{"id":"_T6","span":{"begin":175,"end":187},"obj":"FMAID:167256"},{"id":"_T7","span":{"begin":175,"end":187},"obj":"FMAID:62925"},{"id":"_T8","span":{"begin":493,"end":501},"obj":"FMAID:61795"},{"id":"_T9","span":{"begin":493,"end":501},"obj":"FMAID:165243"},{"id":"_T10","span":{"begin":502,"end":510},"obj":"FMAID:67257"},{"id":"_T11","span":{"begin":502,"end":510},"obj":"FMAID:165447"},{"id":"_T12","span":{"begin":1037,"end":1043},"obj":"FMAID:50596"},{"id":"_T13","span":{"begin":1037,"end":1043},"obj":"FMAID:146304"},{"id":"_T14","span":{"begin":1234,"end":1241},"obj":"FMAID:165447"},{"id":"_T15","span":{"begin":1234,"end":1241},"obj":"FMAID:67257"},{"id":"_T16","span":{"begin":1367,"end":1376},"obj":"FMAID:165656"},{"id":"_T17","span":{"begin":1367,"end":1376},"obj":"FMAID:67745"},{"id":"_T18","span":{"begin":1453,"end":1462},"obj":"FMAID:61795"},{"id":"_T19","span":{"begin":1453,"end":1462},"obj":"FMAID:165243"},{"id":"_T20","span":{"begin":1488,"end":1494},"obj":"FMAID:30332"},{"id":"_T21","span":{"begin":1488,"end":1494},"obj":"FMAID:171168"},{"id":"_T22","span":{"begin":1646,"end":1651},"obj":"FMAID:146304"},{"id":"_T23","span":{"begin":1646,"end":1651},"obj":"FMAID:50596"},{"id":"_T24","span":{"begin":1685,"end":1698},"obj":"FMAID:82737"},{"id":"_T25","span":{"begin":1685,"end":1698},"obj":"FMAID:197276"}],"namespaces":[{"prefix":"FMAID","uri":"http://purl.org/sig/ont/fma/fma"}],"attributes":[{"subj":"_T1","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T2","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T3","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T4","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T5","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T6","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T7","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T8","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T9","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T10","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T11","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T12","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T13","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T14","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T15","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T16","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T17","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T18","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T19","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T20","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T21","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T22","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T23","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T24","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T25","pred":"source","obj":"GlycoBiology-FMA"}]},{"project":"GlycoBiology-NCBITAXON","denotations":[{"id":"T1","span":{"begin":322,"end":328},"obj":"http://purl.bioontology.org/ontology/STY/T051"},{"id":"T2","span":{"begin":338,"end":344},"obj":"http://purl.bioontology.org/ontology/STY/T051"},{"id":"T3","span":{"begin":746,"end":765},"obj":"http://purl.bioontology.org/ontology/STY/T039"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T2","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T3","pred":"source","obj":"GlycoBiology-NCBITAXON"}]},{"project":"GO-BP","denotations":[{"id":"T1","span":{"begin":100,"end":112},"obj":"http://purl.obolibrary.org/obo/GO_0006954"},{"id":"T2","span":{"begin":1749,"end":1761},"obj":"http://purl.obolibrary.org/obo/GO_0006954"},{"id":"T3","span":{"begin":202,"end":214},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T4","span":{"begin":931,"end":943},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T5","span":{"begin":1083,"end":1096},"obj":"http://purl.obolibrary.org/obo/GO_0070085"},{"id":"T6","span":{"begin":410,"end":421},"obj":"http://purl.obolibrary.org/obo/GO_0036065"},{"id":"T7","span":{"begin":1408,"end":1420},"obj":"http://purl.obolibrary.org/obo/GO_0036065"},{"id":"T8","span":{"begin":437,"end":443},"obj":"http://purl.obolibrary.org/obo/GO_0097503"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-BP"},{"subj":"T2","pred":"source","obj":"GO-BP"},{"subj":"T3","pred":"source","obj":"GO-BP"},{"subj":"T4","pred":"source","obj":"GO-BP"},{"subj":"T5","pred":"source","obj":"GO-BP"},{"subj":"T6","pred":"source","obj":"GO-BP"},{"subj":"T7","pred":"source","obj":"GO-BP"},{"subj":"T8","pred":"source","obj":"GO-BP"}]},{"project":"GO-MF","denotations":[{"id":"T1","span":{"begin":488,"end":492},"obj":"http://purl.obolibrary.org/obo/GO_0070026"},{"id":"T2","span":{"begin":1277,"end":1284},"obj":"http://purl.obolibrary.org/obo/GO_0070026"},{"id":"T3","span":{"begin":1442,"end":1449},"obj":"http://purl.obolibrary.org/obo/GO_0070026"},{"id":"T4","span":{"begin":1562,"end":1569},"obj":"http://purl.obolibrary.org/obo/GO_0070026"},{"id":"T5","span":{"begin":488,"end":492},"obj":"http://purl.obolibrary.org/obo/GO_0003680"},{"id":"T6","span":{"begin":1277,"end":1284},"obj":"http://purl.obolibrary.org/obo/GO_0003680"},{"id":"T7","span":{"begin":1442,"end":1449},"obj":"http://purl.obolibrary.org/obo/GO_0003680"},{"id":"T8","span":{"begin":1562,"end":1569},"obj":"http://purl.obolibrary.org/obo/GO_0003680"},{"id":"T9","span":{"begin":488,"end":492},"obj":"http://purl.obolibrary.org/obo/GO_0017091"},{"id":"T10","span":{"begin":1277,"end":1284},"obj":"http://purl.obolibrary.org/obo/GO_0017091"},{"id":"T11","span":{"begin":1442,"end":1449},"obj":"http://purl.obolibrary.org/obo/GO_0017091"},{"id":"T12","span":{"begin":1562,"end":1569},"obj":"http://purl.obolibrary.org/obo/GO_0017091"},{"id":"T13","span":{"begin":488,"end":492},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T14","span":{"begin":1277,"end":1284},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T15","span":{"begin":1442,"end":1449},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T16","span":{"begin":1562,"end":1569},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T17","span":{"begin":493,"end":501},"obj":"http://purl.obolibrary.org/obo/GO_0030246"},{"id":"T18","span":{"begin":1453,"end":1462},"obj":"http://purl.obolibrary.org/obo/GO_0030246"},{"id":"T19","span":{"begin":1270,"end":1276},"obj":"http://purl.obolibrary.org/obo/GO_0005488"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-MF"},{"subj":"T2","pred":"source","obj":"GO-MF"},{"subj":"T3","pred":"source","obj":"GO-MF"},{"subj":"T4","pred":"source","obj":"GO-MF"},{"subj":"T5","pred":"source","obj":"GO-MF"},{"subj":"T6","pred":"source","obj":"GO-MF"},{"subj":"T7","pred":"source","obj":"GO-MF"},{"subj":"T8","pred":"source","obj":"GO-MF"},{"subj":"T9","pred":"source","obj":"GO-MF"},{"subj":"T10","pred":"source","obj":"GO-MF"},{"subj":"T11","pred":"source","obj":"GO-MF"},{"subj":"T12","pred":"source","obj":"GO-MF"},{"subj":"T13","pred":"source","obj":"GO-MF"},{"subj":"T14","pred":"source","obj":"GO-MF"},{"subj":"T15","pred":"source","obj":"GO-MF"},{"subj":"T16","pred":"source","obj":"GO-MF"},{"subj":"T17","pred":"source","obj":"GO-MF"},{"subj":"T18","pred":"source","obj":"GO-MF"},{"subj":"T19","pred":"source","obj":"GO-MF"}]},{"project":"EDAM-topics","denotations":[{"id":"T1","span":{"begin":27,"end":32},"obj":"http://edamontology.org/topic_2815"},{"id":"T2","span":{"begin":79,"end":95},"obj":"http://edamontology.org/topic_3375"},{"id":"T3","span":{"begin":114,"end":119},"obj":"http://edamontology.org/topic_2815"},{"id":"T4","span":{"begin":162,"end":167},"obj":"http://edamontology.org/topic_2815"},{"id":"T5","span":{"begin":263,"end":279},"obj":"http://edamontology.org/topic_3375"},{"id":"T6","span":{"begin":502,"end":510},"obj":"http://edamontology.org/topic_0078"},{"id":"T7","span":{"begin":544,"end":560},"obj":"http://edamontology.org/topic_3400"},{"id":"T8","span":{"begin":697,"end":719},"obj":"http://edamontology.org/topic_0081"},{"id":"T9","span":{"begin":701,"end":719},"obj":"http://edamontology.org/topic_1317"},{"id":"T10","span":{"begin":712,"end":719},"obj":"http://edamontology.org/topic_3070"},{"id":"T11","span":{"begin":1104,"end":1125},"obj":"http://edamontology.org/topic_0694"},{"id":"T12","span":{"begin":1104,"end":1125},"obj":"http://edamontology.org/topic_3542"},{"id":"T13","span":{"begin":1145,"end":1160},"obj":"http://edamontology.org/topic_2828"},{"id":"T14","span":{"begin":1234,"end":1241},"obj":"http://edamontology.org/topic_0078"},{"id":"T15","span":{"begin":1234,"end":1250},"obj":"http://edamontology.org/topic_0176"},{"id":"T16","span":{"begin":1685,"end":1698},"obj":"http://edamontology.org/topic_0152"},{"id":"T17","span":{"begin":1728,"end":1744},"obj":"http://edamontology.org/topic_3375"}],"attributes":[{"subj":"T1","pred":"source","obj":"EDAM-topics"},{"subj":"T2","pred":"source","obj":"EDAM-topics"},{"subj":"T3","pred":"source","obj":"EDAM-topics"},{"subj":"T4","pred":"source","obj":"EDAM-topics"},{"subj":"T5","pred":"source","obj":"EDAM-topics"},{"subj":"T6","pred":"source","obj":"EDAM-topics"},{"subj":"T7","pred":"source","obj":"EDAM-topics"},{"subj":"T8","pred":"source","obj":"EDAM-topics"},{"subj":"T9","pred":"source","obj":"EDAM-topics"},{"subj":"T10","pred":"source","obj":"EDAM-topics"},{"subj":"T11","pred":"source","obj":"EDAM-topics"},{"subj":"T12","pred":"source","obj":"EDAM-topics"},{"subj":"T13","pred":"source","obj":"EDAM-topics"},{"subj":"T14","pred":"source","obj":"EDAM-topics"},{"subj":"T15","pred":"source","obj":"EDAM-topics"},{"subj":"T16","pred":"source","obj":"EDAM-topics"},{"subj":"T17","pred":"source","obj":"EDAM-topics"}]},{"project":"EDAM-DFO","denotations":[{"id":"T1","span":{"begin":0,"end":10},"obj":"http://edamontology.org/data_0883"},{"id":"T2","span":{"begin":142,"end":145},"obj":"http://edamontology.org/format_3693"},{"id":"T3","span":{"begin":234,"end":237},"obj":"http://edamontology.org/format_3693"},{"id":"T4","span":{"begin":502,"end":510},"obj":"http://edamontology.org/format_1208"},{"id":"T5","span":{"begin":502,"end":510},"obj":"http://edamontology.org/data_1467"},{"id":"T6","span":{"begin":578,"end":587},"obj":"http://edamontology.org/data_0883"},{"id":"T7","span":{"begin":606,"end":609},"obj":"http://edamontology.org/format_3693"},{"id":"T8","span":{"begin":619,"end":627},"obj":"http://edamontology.org/data_2048"},{"id":"T9","span":{"begin":701,"end":711},"obj":"http://edamontology.org/data_0883"},{"id":"T10","span":{"begin":843,"end":853},"obj":"http://edamontology.org/data_0883"},{"id":"T11","span":{"begin":883,"end":886},"obj":"http://edamontology.org/format_3693"},{"id":"T12","span":{"begin":901,"end":911},"obj":"http://edamontology.org/data_0883"},{"id":"T13","span":{"begin":1032,"end":1036},"obj":"http://edamontology.org/data_0006"},{"id":"T14","span":{"begin":1100,"end":1103},"obj":"http://edamontology.org/format_3693"},{"id":"T15","span":{"begin":1104,"end":1125},"obj":"http://edamontology.org/operation_2488"},{"id":"T16","span":{"begin":1104,"end":1125},"obj":"http://edamontology.org/data_0880"},{"id":"T17","span":{"begin":1106,"end":1125},"obj":"http://edamontology.org/data_2881"},{"id":"T18","span":{"begin":1106,"end":1125},"obj":"http://edamontology.org/data_2081"},{"id":"T19","span":{"begin":1106,"end":1125},"obj":"http://edamontology.org/data_0880"},{"id":"T20","span":{"begin":1106,"end":1125},"obj":"http://edamontology.org/operation_0500"},{"id":"T21","span":{"begin":1106,"end":1125},"obj":"http://edamontology.org/operation_2482"},{"id":"T22","span":{"begin":1106,"end":1125},"obj":"http://edamontology.org/data_2973"},{"id":"T23","span":{"begin":1106,"end":1125},"obj":"http://edamontology.org/data_2880"},{"id":"T24","span":{"begin":1106,"end":1125},"obj":"http://edamontology.org/data_2366"},{"id":"T25","span":{"begin":1116,"end":1125},"obj":"http://edamontology.org/data_0883"},{"id":"T26","span":{"begin":1234,"end":1241},"obj":"http://edamontology.org/data_1467"},{"id":"T27","span":{"begin":1234,"end":1241},"obj":"http://edamontology.org/format_1208"},{"id":"T28","span":{"begin":1266,"end":1269},"obj":"http://edamontology.org/format_3693"},{"id":"T29","span":{"begin":1270,"end":1289},"obj":"http://edamontology.org/operation_0482"},{"id":"T30","span":{"begin":1424,"end":1427},"obj":"http://edamontology.org/format_3693"},{"id":"T31","span":{"begin":1428,"end":1437},"obj":"http://edamontology.org/data_0883"},{"id":"T32","span":{"begin":1715,"end":1718},"obj":"http://edamontology.org/format_3693"}],"attributes":[{"subj":"T1","pred":"source","obj":"EDAM-DFO"},{"subj":"T2","pred":"source","obj":"EDAM-DFO"},{"subj":"T3","pred":"source","obj":"EDAM-DFO"},{"subj":"T4","pred":"source","obj":"EDAM-DFO"},{"subj":"T5","pred":"source","obj":"EDAM-DFO"},{"subj":"T6","pred":"source","obj":"EDAM-DFO"},{"subj":"T7","pred":"source","obj":"EDAM-DFO"},{"subj":"T8","pred":"source","obj":"EDAM-DFO"},{"subj":"T9","pred":"source","obj":"EDAM-DFO"},{"subj":"T10","pred":"source","obj":"EDAM-DFO"},{"subj":"T11","pred":"source","obj":"EDAM-DFO"},{"subj":"T12","pred":"source","obj":"EDAM-DFO"},{"subj":"T13","pred":"source","obj":"EDAM-DFO"},{"subj":"T14","pred":"source","obj":"EDAM-DFO"},{"subj":"T15","pred":"source","obj":"EDAM-DFO"},{"subj":"T16","pred":"source","obj":"EDAM-DFO"},{"subj":"T17","pred":"source","obj":"EDAM-DFO"},{"subj":"T18","pred":"source","obj":"EDAM-DFO"},{"subj":"T19","pred":"source","obj":"EDAM-DFO"},{"subj":"T20","pred":"source","obj":"EDAM-DFO"},{"subj":"T21","pred":"source","obj":"EDAM-DFO"},{"subj":"T22","pred":"source","obj":"EDAM-DFO"},{"subj":"T23","pred":"source","obj":"EDAM-DFO"},{"subj":"T24","pred":"source","obj":"EDAM-DFO"},{"subj":"T25","pred":"source","obj":"EDAM-DFO"},{"subj":"T26","pred":"source","obj":"EDAM-DFO"},{"subj":"T27","pred":"source","obj":"EDAM-DFO"},{"subj":"T28","pred":"source","obj":"EDAM-DFO"},{"subj":"T29","pred":"source","obj":"EDAM-DFO"},{"subj":"T30","pred":"source","obj":"EDAM-DFO"},{"subj":"T31","pred":"source","obj":"EDAM-DFO"},{"subj":"T32","pred":"source","obj":"EDAM-DFO"}]},{"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":27,"end":32},"obj":"http://purl.bioontology.org/ontology/STY/T016"},{"id":"T2","span":{"begin":162,"end":167},"obj":"http://purl.bioontology.org/ontology/STY/T016"},{"id":"T3","span":{"begin":322,"end":328},"obj":"http://purl.bioontology.org/ontology/STY/T051"},{"id":"T4","span":{"begin":338,"end":344},"obj":"http://purl.bioontology.org/ontology/STY/T051"},{"id":"T5","span":{"begin":746,"end":765},"obj":"http://purl.bioontology.org/ontology/STY/T038"},{"id":"T6","span":{"begin":1291,"end":1301},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/189528"},{"id":"T1","span":{"begin":27,"end":32},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":114,"end":119},"obj":"OrganismTaxon"},{"id":"T3","span":{"begin":162,"end":167},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"NCBItxid:9606"},{"id":"A2","pred":"db_id","subj":"T2","obj":"NCBItxid:9606"},{"id":"A3","pred":"db_id","subj":"T3","obj":"NCBItxid:9606"},{"subj":"T1","pred":"source","obj":"NCBITAXON"},{"subj":"T2","pred":"source","obj":"NCBITAXON"},{"subj":"T3","pred":"source","obj":"NCBITAXON"},{"subj":"T4","pred":"source","obj":"NCBITAXON"},{"subj":"T5","pred":"source","obj":"NCBITAXON"},{"subj":"T6","pred":"source","obj":"NCBITAXON"},{"subj":"T1","pred":"source","obj":"NCBITAXON"},{"subj":"T2","pred":"source","obj":"NCBITAXON"},{"subj":"T3","pred":"source","obj":"NCBITAXON"}]},{"project":"GlycoBiology-MAT","denotations":[{"id":"T1","span":{"begin":1488,"end":1494},"obj":"http://purl.obolibrary.org/obo/MAT_0000488"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-MAT"}]},{"project":"GlycoBiology-Motifs","denotations":[{"id":"T1","span":{"begin":437,"end":449},"obj":"http://rdf.glycoinfo.org/glycan/G00053MO"},{"id":"T2","span":{"begin":437,"end":451},"obj":"http://rdf.glycoinfo.org/glycan/G00054MO"},{"id":"T3","span":{"begin":444,"end":449},"obj":"http://rdf.glycoinfo.org/glycan/G00047MO"},{"id":"T4","span":{"begin":444,"end":451},"obj":"http://rdf.glycoinfo.org/glycan/G00051MO"}],"attributes":[{"subj":"T1","pred":"source","obj":"GlycoBiology-Motifs"},{"subj":"T2","pred":"source","obj":"GlycoBiology-Motifs"},{"subj":"T3","pred":"source","obj":"GlycoBiology-Motifs"},{"subj":"T4","pred":"source","obj":"GlycoBiology-Motifs"}]},{"project":"Lectin","denotations":[{"id":"Lectin_T1","span":{"begin":493,"end":501},"obj":"https://acgg.asia/db/lfdb/LfDB0013"},{"id":"Lectin_T2","span":{"begin":493,"end":501},"obj":"https://acgg.asia/db/lfdb/LfDB0043"},{"id":"Lectin_T3","span":{"begin":493,"end":501},"obj":"https://acgg.asia/db/lfdb/LfDB0142"}],"attributes":[{"subj":"Lectin_T1","pred":"source","obj":"Lectin"},{"subj":"Lectin_T2","pred":"source","obj":"Lectin"},{"subj":"Lectin_T3","pred":"source","obj":"Lectin"}]},{"project":"GlycoBiology-Epitope","denotations":[{"id":"PD-GlycoEpitope-B_T1","span":{"begin":437,"end":449},"obj":"http://www.glycoepitope.jp/epitopes/EP0008"},{"id":"PD-GlycoEpitope-B_T2","span":{"begin":437,"end":451},"obj":"http://www.glycoepitope.jp/epitopes/EP0012"},{"id":"PD-GlycoEpitope-B_T3","span":{"begin":444,"end":451},"obj":"http://www.glycoepitope.jp/epitopes/EP0011"}],"attributes":[{"subj":"PD-GlycoEpitope-B_T1","pred":"source","obj":"GlycoBiology-Epitope"},{"subj":"PD-GlycoEpitope-B_T2","pred":"source","obj":"GlycoBiology-Epitope"},{"subj":"PD-GlycoEpitope-B_T3","pred":"source","obj":"GlycoBiology-Epitope"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"GlyCosmos6-UBERON","color":"#93d6ec","default":true},{"id":"Glycan-Motif","color":"#ece893"},{"id":"Inflammaging","color":"#ce93ec"},{"id":"GlyCosmos6-Glycan-Motif-Image","color":"#93ecb4"},{"id":"sentences","color":"#ec9a93"},{"id":"GlyCosmos6-Glycan-Motif-Structure","color":"#93a6ec"},{"id":"Glycosmos6-GlycoEpitope","color":"#c0ec93"},{"id":"mondo_disease","color":"#ec93da"},{"id":"GlycoBiology-FMA","color":"#93ece4"},{"id":"GlycoBiology-NCBITAXON","color":"#ecca93"},{"id":"GO-BP","color":"#b093ec"},{"id":"GO-MF","color":"#93ec96"},{"id":"EDAM-topics","color":"#ec93a9"},{"id":"EDAM-DFO","color":"#93c3ec"},{"id":"NCBITAXON","color":"#deec93"},{"id":"GlycoBiology-MAT","color":"#e093ec"},{"id":"GlycoBiology-Motifs","color":"#93ecc6"},{"id":"Lectin","color":"#ecac93"},{"id":"GlycoBiology-Epitope","color":"#9393ec"}]}]}}