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CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 138-154 Cell denotes eukaryotic cells http://purl.obolibrary.org/obo/CL:0000255

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-64 Sentence denotes Glycosaminoglycans affect heparanase location in CHO cell lines.
TextSentencer_T2 65-134 Sentence denotes Glycosaminoglycans (GAG) play a ubiquitous role in tissues and cells.
TextSentencer_T3 135-253 Sentence denotes In eukaryotic cells, heparan sulfate (HS) is initially degraded by an endo-β-glucuronidase called heparanase-1 (HPSE).
TextSentencer_T4 254-422 Sentence denotes HS oligosaccharides generated by the action of HPSE intensify the activity of signaling molecules, activating inflammatory response, tumor metastasis, and angiogenesis.
TextSentencer_T5 423-580 Sentence denotes The aim of the present study was to understand if sulfated GAG could modulate HPSE, since the mechanisms that regulate HPSE have not been completely defined.
TextSentencer_T6 581-755 Sentence denotes CHO-K1 cells were treated with 4-methylumbelliferone (4-MU) and sodium chlorate, to promote total inhibition of GAG synthesis, and reduce the sulfation pattern, respectively.
TextSentencer_T7 756-889 Sentence denotes The GAG profile of the wild CHO-K1 cells and CHO-745, deficient in xylosyltransferase, was determined after [(35)S]-sulfate labeling.
TextSentencer_T8 890-974 Sentence denotes HPSE expression was determined via real-time quantitative polymerase chain reaction.
TextSentencer_T9 975-1086 Sentence denotes Total ablation of GAG with 4-MU in CHO-K1 inhibited HPSE expression, while the lack of sulfation had no effect.
TextSentencer_T10 1087-1155 Sentence denotes Interestingly, 4-MU had no effect in CHO-745 cells for these assays.
TextSentencer_T11 1156-1370 Sentence denotes In addition, a different enzyme location was observed in CHO-K1 wild-type cells, which presents HPSE mainly in the extracellular matrix, in comparison with the CHO-745 mutant cells, which is found in the cytoplasm.
TextSentencer_T12 1371-1477 Sentence denotes In view of our results, we can conclude that GAG are essential modulators of HPSE expression and location.
TextSentencer_T13 1478-1563 Sentence denotes Therefore, GAG profile could impact cell behavior mediated by the regulation of HPSE.
T1 0-64 Sentence denotes Glycosaminoglycans affect heparanase location in CHO cell lines.
T2 65-134 Sentence denotes Glycosaminoglycans (GAG) play a ubiquitous role in tissues and cells.
T3 135-253 Sentence denotes In eukaryotic cells, heparan sulfate (HS) is initially degraded by an endo-β-glucuronidase called heparanase-1 (HPSE).
T4 254-422 Sentence denotes HS oligosaccharides generated by the action of HPSE intensify the activity of signaling molecules, activating inflammatory response, tumor metastasis, and angiogenesis.
T5 423-580 Sentence denotes The aim of the present study was to understand if sulfated GAG could modulate HPSE, since the mechanisms that regulate HPSE have not been completely defined.
T6 581-755 Sentence denotes CHO-K1 cells were treated with 4-methylumbelliferone (4-MU) and sodium chlorate, to promote total inhibition of GAG synthesis, and reduce the sulfation pattern, respectively.
T7 756-889 Sentence denotes The GAG profile of the wild CHO-K1 cells and CHO-745, deficient in xylosyltransferase, was determined after [(35)S]-sulfate labeling.
T8 890-974 Sentence denotes HPSE expression was determined via real-time quantitative polymerase chain reaction.
T9 975-1086 Sentence denotes Total ablation of GAG with 4-MU in CHO-K1 inhibited HPSE expression, while the lack of sulfation had no effect.
T10 1087-1155 Sentence denotes Interestingly, 4-MU had no effect in CHO-745 cells for these assays.
T11 1156-1370 Sentence denotes In addition, a different enzyme location was observed in CHO-K1 wild-type cells, which presents HPSE mainly in the extracellular matrix, in comparison with the CHO-745 mutant cells, which is found in the cytoplasm.
T12 1371-1477 Sentence denotes In view of our results, we can conclude that GAG are essential modulators of HPSE expression and location.
T13 1478-1563 Sentence denotes Therefore, GAG profile could impact cell behavior mediated by the regulation of HPSE.
T1 0-64 Sentence denotes Glycosaminoglycans affect heparanase location in CHO cell lines.
T2 65-134 Sentence denotes Glycosaminoglycans (GAG) play a ubiquitous role in tissues and cells.
T3 135-253 Sentence denotes In eukaryotic cells, heparan sulfate (HS) is initially degraded by an endo-β-glucuronidase called heparanase-1 (HPSE).
T4 254-422 Sentence denotes HS oligosaccharides generated by the action of HPSE intensify the activity of signaling molecules, activating inflammatory response, tumor metastasis, and angiogenesis.
T5 423-580 Sentence denotes The aim of the present study was to understand if sulfated GAG could modulate HPSE, since the mechanisms that regulate HPSE have not been completely defined.
T6 581-755 Sentence denotes CHO-K1 cells were treated with 4-methylumbelliferone (4-MU) and sodium chlorate, to promote total inhibition of GAG synthesis, and reduce the sulfation pattern, respectively.
T7 756-889 Sentence denotes The GAG profile of the wild CHO-K1 cells and CHO-745, deficient in xylosyltransferase, was determined after [(35)S]-sulfate labeling.
T8 890-974 Sentence denotes HPSE expression was determined via real-time quantitative polymerase chain reaction.
T9 975-1086 Sentence denotes Total ablation of GAG with 4-MU in CHO-K1 inhibited HPSE expression, while the lack of sulfation had no effect.
T10 1087-1155 Sentence denotes Interestingly, 4-MU had no effect in CHO-745 cells for these assays.
T11 1156-1370 Sentence denotes In addition, a different enzyme location was observed in CHO-K1 wild-type cells, which presents HPSE mainly in the extracellular matrix, in comparison with the CHO-745 mutant cells, which is found in the cytoplasm.
T12 1371-1477 Sentence denotes In view of our results, we can conclude that GAG are essential modulators of HPSE expression and location.
T13 1478-1563 Sentence denotes Therefore, GAG profile could impact cell behavior mediated by the regulation of HPSE.

Glycosmos6-GlycoEpitope

Id Subject Object Predicate Lexical cue
T1 156-171 http://www.glycoepitope.jp/epitopes/EP0086 denotes heparan sulfate
T2 173-175 http://www.glycoepitope.jp/epitopes/EP0086 denotes HS
T3 254-256 http://www.glycoepitope.jp/epitopes/EP0086 denotes HS

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 0-18 FMAID:63011 denotes Glycosaminoglycans
_T2 0-18 FMAID:167395 denotes Glycosaminoglycans
_T3 65-83 FMAID:63011 denotes Glycosaminoglycans
_T4 65-83 FMAID:167395 denotes Glycosaminoglycans
_T5 85-88 FMAID:167404 denotes GAG
_T6 116-123 FMAID:256050 denotes tissues
_T7 124-133 FMAID:200932 denotes and cells
_T8 124-133 FMAID:86471 denotes and cells
_T9 128-133 FMAID:169002 denotes cells
_T10 128-133 FMAID:68646 denotes cells
_T11 149-154 FMAID:68646 denotes cells
_T12 149-154 FMAID:169002 denotes cells
_T13 156-163 FMAID:67110 denotes heparan
_T14 156-163 FMAID:165191 denotes heparan
_T15 156-171 FMAID:167405 denotes heparan sulfate
_T16 156-171 FMAID:63023 denotes heparan sulfate
_T17 257-273 FMAID:82742 denotes oligosaccharides
_T18 257-273 FMAID:196731 denotes oligosaccharides
_T19 482-485 FMAID:167404 denotes GAG
_T20 588-593 FMAID:169002 denotes cells
_T21 588-593 FMAID:68646 denotes cells
_T22 693-696 FMAID:167404 denotes GAG
_T23 760-763 FMAID:167404 denotes GAG
_T24 791-796 FMAID:169002 denotes cells
_T25 791-796 FMAID:68646 denotes cells
_T26 993-996 FMAID:167404 denotes GAG
_T27 1132-1137 FMAID:169002 denotes cells
_T28 1132-1137 FMAID:68646 denotes cells
_T29 1230-1235 FMAID:169002 denotes cells
_T30 1230-1235 FMAID:68646 denotes cells
_T31 1271-1291 FMAID:165194 denotes extracellular matrix
_T32 1271-1291 FMAID:265717 denotes extracellular matrix
_T33 1331-1336 FMAID:68646 denotes cells
_T34 1331-1336 FMAID:169002 denotes cells
_T35 1360-1369 FMAID:164989 denotes cytoplasm
_T36 1360-1369 FMAID:66835 denotes cytoplasm
_T37 1360-1369 FMAID:165187 denotes cytoplasm
_T38 1416-1419 FMAID:167404 denotes GAG
_T39 1489-1492 FMAID:167404 denotes GAG

uniprot-human

Id Subject Object Predicate Lexical cue
T1 26-36 http://www.uniprot.org/uniprot/Q9Y251 denotes heparanase
T2 233-245 http://www.uniprot.org/uniprot/Q9Y251 denotes heparanase-1
T3 247-251 http://www.uniprot.org/uniprot/Q9Y251 denotes HPSE
T4 301-305 http://www.uniprot.org/uniprot/Q9Y251 denotes HPSE
T5 501-505 http://www.uniprot.org/uniprot/Q9Y251 denotes HPSE
T6 542-546 http://www.uniprot.org/uniprot/Q9Y251 denotes HPSE
T7 890-894 http://www.uniprot.org/uniprot/Q9Y251 denotes HPSE
T8 1027-1031 http://www.uniprot.org/uniprot/Q9Y251 denotes HPSE
T9 1252-1256 http://www.uniprot.org/uniprot/Q9Y251 denotes HPSE
T10 1448-1452 http://www.uniprot.org/uniprot/Q9Y251 denotes HPSE
T11 1558-1562 http://www.uniprot.org/uniprot/Q9Y251 denotes HPSE
T12 210-225 http://www.uniprot.org/uniprot/P08236 denotes β-glucuronidase
T13 585-587 http://www.uniprot.org/uniprot/P04264 denotes K1
T14 788-790 http://www.uniprot.org/uniprot/P04264 denotes K1
T15 1014-1016 http://www.uniprot.org/uniprot/P04264 denotes K1
T16 1217-1219 http://www.uniprot.org/uniprot/P04264 denotes K1

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 26-36 http://www.uniprot.org/uniprot/Q6YGZ1 denotes heparanase
T2 233-243 http://www.uniprot.org/uniprot/Q6YGZ1 denotes heparanase
T3 210-225 http://www.uniprot.org/uniprot/P12265 denotes β-glucuronidase
T4 585-587 http://www.uniprot.org/uniprot/P04104 denotes K1
T5 788-790 http://www.uniprot.org/uniprot/P04104 denotes K1
T6 1014-1016 http://www.uniprot.org/uniprot/P04104 denotes K1
T7 1217-1219 http://www.uniprot.org/uniprot/P04104 denotes K1

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 116-123 http://purl.bioontology.org/ontology/STY/T024 denotes tissues
T2 128-133 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T3 138-148 http://purl.bioontology.org/ontology/NCBITAXON/2759 denotes eukaryotic
T4 149-154 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T5 517-527 http://purl.bioontology.org/ontology/NCBITAXON/127244 denotes mechanisms
T6 588-593 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T7 637-639 http://purl.bioontology.org/ontology/NCBITAXON/10088 denotes MU
T8 791-796 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T9 1004-1006 http://purl.bioontology.org/ontology/NCBITAXON/10088 denotes MU
T10 1104-1106 http://purl.bioontology.org/ontology/NCBITAXON/10088 denotes MU
T11 1132-1137 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T12 1230-1235 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T13 1331-1336 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T14 1519-1527 http://purl.bioontology.org/ontology/STY/T053 denotes behavior

GO-BP

Id Subject Object Predicate Lexical cue
T1 49-52 http://purl.obolibrary.org/obo/GO_0043848 denotes CHO
T2 581-584 http://purl.obolibrary.org/obo/GO_0043848 denotes CHO
T3 784-787 http://purl.obolibrary.org/obo/GO_0043848 denotes CHO
T4 801-804 http://purl.obolibrary.org/obo/GO_0043848 denotes CHO
T5 1010-1013 http://purl.obolibrary.org/obo/GO_0043848 denotes CHO
T6 1124-1127 http://purl.obolibrary.org/obo/GO_0043848 denotes CHO
T7 1213-1216 http://purl.obolibrary.org/obo/GO_0043848 denotes CHO
T8 1316-1319 http://purl.obolibrary.org/obo/GO_0043848 denotes CHO
T9 164-171 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfate
T10 473-481 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfated
T11 723-732 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfation
T12 1062-1071 http://purl.obolibrary.org/obo/GO_0051923 denotes sulfation
T13 190-198 http://purl.obolibrary.org/obo/GO_0009056 denotes degraded
T14 332-341 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T15 353-385 http://purl.obolibrary.org/obo/GO_0002675 denotes activating inflammatory response
T16 353-385 http://purl.obolibrary.org/obo/GO_0002678 denotes activating inflammatory response
T17 353-385 http://purl.obolibrary.org/obo/GO_0050729 denotes activating inflammatory response
T18 364-385 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammatory response
T19 409-421 http://purl.obolibrary.org/obo/GO_0001525 denotes angiogenesis
T20 533-541 http://purl.obolibrary.org/obo/GO_0065007 denotes regulate
T21 1544-1554 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T22 697-706 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T23 1519-1527 http://purl.obolibrary.org/obo/GO_0007610 denotes behavior

GO-CC

Id Subject Object Predicate Lexical cue
T1 53-57 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T2 128-133 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T3 149-154 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T4 588-593 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T5 791-796 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T6 1132-1137 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7 1230-1235 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T8 1331-1336 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9 1271-1284 http://purl.obolibrary.org/obo/GO_0005576 denotes extracellular
T10 1271-1291 http://purl.obolibrary.org/obo/GO_0031012 denotes extracellular matrix
T11 1360-1369 http://purl.obolibrary.org/obo/GO_0005737 denotes cytoplasm

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 116-123 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

GlycoBiology-Epitope

Id Subject Object Predicate Lexical cue
PD-GlycoEpitope-B_T1 156-171 http://www.glycoepitope.jp/epitopes/EP0086 denotes heparan sulfate
PD-GlycoEpitope-B_T2 880-888 id denotes labeling

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 116-123 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 387-392 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 387-392 Phenotype denotes tumor HP:0002664

GlyCosmos15-HP

Id Subject Object Predicate Lexical cue hp_id
T1 387-392 Phenotype denotes tumor HP:0002664

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-64 Sentence denotes Glycosaminoglycans affect heparanase location in CHO cell lines.
T2 65-134 Sentence denotes Glycosaminoglycans (GAG) play a ubiquitous role in tissues and cells.
T3 135-253 Sentence denotes In eukaryotic cells, heparan sulfate (HS) is initially degraded by an endo-β-glucuronidase called heparanase-1 (HPSE).
T4 254-422 Sentence denotes HS oligosaccharides generated by the action of HPSE intensify the activity of signaling molecules, activating inflammatory response, tumor metastasis, and angiogenesis.
T5 423-580 Sentence denotes The aim of the present study was to understand if sulfated GAG could modulate HPSE, since the mechanisms that regulate HPSE have not been completely defined.
T6 581-755 Sentence denotes CHO-K1 cells were treated with 4-methylumbelliferone (4-MU) and sodium chlorate, to promote total inhibition of GAG synthesis, and reduce the sulfation pattern, respectively.
T7 756-889 Sentence denotes The GAG profile of the wild CHO-K1 cells and CHO-745, deficient in xylosyltransferase, was determined after [(35)S]-sulfate labeling.
T8 890-974 Sentence denotes HPSE expression was determined via real-time quantitative polymerase chain reaction.
T9 975-1086 Sentence denotes Total ablation of GAG with 4-MU in CHO-K1 inhibited HPSE expression, while the lack of sulfation had no effect.
T10 1087-1155 Sentence denotes Interestingly, 4-MU had no effect in CHO-745 cells for these assays.
T11 1156-1370 Sentence denotes In addition, a different enzyme location was observed in CHO-K1 wild-type cells, which presents HPSE mainly in the extracellular matrix, in comparison with the CHO-745 mutant cells, which is found in the cytoplasm.
T12 1371-1477 Sentence denotes In view of our results, we can conclude that GAG are essential modulators of HPSE expression and location.
T13 1478-1563 Sentence denotes Therefore, GAG profile could impact cell behavior mediated by the regulation of HPSE.

GlyCosmos15-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 387-392 Disease denotes tumor MONDO:0005070

GlyCosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 156-171 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes heparan sulfate http://www.glycoepitope.jp/epitopes/EP0086
T2 173-175 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086
T3 254-256 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes HS http://www.glycoepitope.jp/epitopes/EP0086

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 138-154 Body_part denotes eukaryotic cells http://purl.obolibrary.org/obo/CL_0000255
T2 1271-1291 Body_part denotes extracellular matrix http://purl.obolibrary.org/obo/GO_0031012
T3 1360-1369 Body_part denotes cytoplasm http://purl.obolibrary.org/obo/GO_0005737