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PubMed:24831788 JSONTXT

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bionlp-st-bb3-2016-training

Id Subject Object Predicate Lexical cue
T1 0-144 Title denotes Evaluation of impermeant, DNA-binding dye fluorescence as a real-time readout of eukaryotic cell toxicity in a high throughput screening format.
T2 145-1457 Paragraph denotes Interpretation of high throughput screening (HTS) data in cell-based assays may be confounded by cytotoxic properties of screening compounds. Therefore, assessing cell toxicity in real time during the HTS process itself would be highly advantageous. Here, we investigate the potential of putatively impermeant, fluorescent, DNA-binding dyes to give cell toxicity readout during HTS. Amongst 19 DNA-binding dyes examined, three classes were identified that were (1) permeant, (2) cytotoxic, or (3) neither permeant nor cytotoxic during 3-day incubation with a macrophage cell line. In the last class, four dyes (SYTOX Green, CellTox Green, GelGreen, and EvaGreen) gave highly robust cytotoxicity data in 384-well screening plates. As proof of principle, successful combination with a luminescence-based assay in HTS format was demonstrated. Here, both intracellular growth of Legionella pneumophila (luminescence) and host cell viability (SYTOX Green exclusion) were assayed in the same screening well. Incorporation of membrane-impermeant, DNA-binding, fluorescent dyes in HTS assays should prove useful by allowing evaluation of cytotoxicity in real time, eliminating reagent addition steps and effort associated with endpoint cell viability analysis, and reducing the need for follow-up cytotoxicity screening.
T3 81-96 Habitat denotes eukaryotic cell
T4 203-207 Habitat denotes cell
T5 308-312 Habitat denotes cell
T6 494-498 Habitat denotes cell
T7 704-724 Habitat denotes macrophage cell line
T8 704-719 Habitat denotes macrophage cell
T9 1020-1042 Bacteria denotes Legionella pneumophila
T10 1062-1071 Habitat denotes host cell
T11 1373-1377 Habitat denotes cell

Allie

Id Subject Object Predicate Lexical cue
SS1_24831788_1_0 163-188 expanded denotes high throughput screening
SS2_24831788_1_0 190-193 abbr denotes HTS
AE1_24831788_1_0 SS1_24831788_1_0 SS2_24831788_1_0 abbreviatedTo high throughput screening,HTS