PubMed:24603336
Annnotations
sonoma2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T0 | 33-36 | GENE | denotes | p53 |
| T1 | 37-53 | POSREG | denotes | gain-of-function |
| T2 | 54-63 | VAR | denotes | mutations |
| T3 | 73-80 | DISEASE | denotes | cancers |
| T4 | 96-122 | MPA | denotes | drug-metabolizing activity |
| T5 | 124-132 | VAR | denotes | Mutation |
| T6 | 136-139 | GENE | denotes | p53 |
| T7 | 152-158 | REG | denotes | common |
| T8 | 183-189 | DISEASE | denotes | cancer |
| T9 | 234-238 | NEGREG | denotes | loss |
| T10 | 252-260 | MPA | denotes | function |
| T11 | 270-274 | POSREG | denotes | gain |
| T12 | 342-353 | GENE | denotes | p53-hotspot |
| T13 | 354-363 | VAR | denotes | mutations |
| T14 | 368-374 | REG | denotes | confer |
| T15 | 523-529 | DISEASE | denotes | cancer |
| T16 | 600-603 | GENE | denotes | p53 |
| T17 | 604-613 | VAR | denotes | mutations |
| T18 | 623-630 | DISEASE | denotes | cancers |
| T19 | 651-660 | VAR | denotes | mutations |
| T20 | 668-674 | VAR | denotes | Arg248 |
| T21 | 679-685 | VAR | denotes | Arg282 |
| T22 | 718-729 | REG | denotes | association |
| T23 | 735-742 | NEGREG | denotes | shorter |
| T24 | 751-759 | CPA | denotes | survival |
| T25 | 869-878 | VAR | denotes | mutations |
| T26 | 888-894 | POSREG | denotes | higher |
| T27 | 895-903 | MPA | denotes | activity |
| T28 | 948-954 | GENE | denotes | CYP3A4 |
| T29 | 994-997 | GENE | denotes | p53 |
| T30 | 1005-1010 | VAR | denotes | R282W |
| T31 | 1050-1061 | POSREG | denotes | upregulated |
| T32 | 1062-1068 | GENE | denotes | CYP3A4 |
| T33 | 1078-1092 | MPA | denotes | protein levels |
| T34 | 1098-1104 | DISEASE | denotes | cancer |
| T35 | 1124-1144 | REG | denotes | mortality-associated |
| T36 | 1145-1148 | GENE | denotes | p53 |
| T37 | 1149-1158 | VAR | denotes | mutations |
| T38 | 1167-1173 | POSREG | denotes | higher |
| T39 | 1174-1180 | GENE | denotes | CYP3A4 |
| T40 | 1181-1191 | MPA | denotes | expression |
| T41 | 1218-1253 | MPA | denotes | CYP3A4-metabolized chemotherapeutic |
| T42 | 1218-1236 | GENE | denotes | CYP3A4-metabolized |
| T43 | 1286-1289 | GENE | denotes | p53 |
| T44 | 1290-1299 | VAR | denotes | mutations |
| T45 | 1337-1344 | DISEASE | denotes | cancers |
| T46 | 1371-1374 | GENE | denotes | p53 |
| T47 | 1380-1386 | DISEASE | denotes | cancer |
| T48 | 1419-1427 | VAR | denotes | mutation |
| T49 | 1446-1451 | DISEASE | denotes | tumor |
| R0 | T0 | T2 | ThemeOf | p53,mutations |
| R1 | T2 | T1 | CauseOf | mutations,gain-of-function |
| R2 | T5 | T7 | CauseOf | Mutation,common |
| R3 | T5 | T9 | CauseOf | Mutation,loss |
| R4 | T5 | T11 | CauseOf | Mutation,gain |
| R5 | T6 | T5 | ThemeOf | p53,Mutation |
| R6 | T10 | T9 | ThemeOf | function,loss |
| R7 | T13 | T14 | CauseOf | mutations,confer |
| R8 | T16 | T17 | ThemeOf | p53,mutations |
| R9 | T19 | T22 | CauseOf | mutations,association |
| R10 | T19 | T23 | CauseOf | mutations,shorter |
| R11 | T20 | T19 | ThemeOf | Arg248,mutations |
| R12 | T20 | T22 | CauseOf | Arg248,association |
| R13 | T20 | T23 | CauseOf | Arg248,shorter |
| R14 | T21 | T19 | ThemeOf | Arg282,mutations |
| R15 | T21 | T22 | CauseOf | Arg282,association |
| R16 | T21 | T23 | CauseOf | Arg282,shorter |
| R17 | T24 | T22 | ThemeOf | survival,association |
| R18 | T24 | T23 | ThemeOf | survival,shorter |
| R19 | T25 | T26 | CauseOf | mutations,higher |
| R20 | T27 | T26 | ThemeOf | activity,higher |
| R21 | T29 | T30 | ThemeOf | p53,R282W |
| R22 | T30 | T31 | CauseOf | R282W,upregulated |
| R23 | T30 | T38 | CauseOf | R282W,higher |
| R24 | T33 | T31 | ThemeOf | protein levels,upregulated |
| R25 | T37 | T35 | CauseOf | mutations,mortality-associated |
| R26 | T36 | T37 | ThemeOf | p53,mutations |
| R27 | T37 | T38 | CauseOf | mutations,higher |
| R28 | T40 | T38 | ThemeOf | expression,higher |
| R29 | T43 | T44 | ThemeOf | p53,mutations |
| R30 | T46 | T48 | ThemeOf | p53,mutation |
DisGeNET
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T0 | 33-36 | gene:7157 | denotes | p53 |
| T1 | 73-80 | disease:C0006826 | denotes | cancers |
| T2 | 136-139 | gene:7157 | denotes | p53 |
| T3 | 183-189 | disease:C0006826 | denotes | cancer |
| T4 | 136-139 | gene:7157 | denotes | p53 |
| T5 | 183-189 | disease:C1306459 | denotes | cancer |
| T6 | 600-603 | gene:7157 | denotes | p53 |
| T7 | 523-529 | disease:C0006826 | denotes | cancer |
| T8 | 600-603 | gene:7157 | denotes | p53 |
| T9 | 523-529 | disease:C1306459 | denotes | cancer |
| T10 | 600-603 | gene:7157 | denotes | p53 |
| T11 | 623-630 | disease:C0006826 | denotes | cancers |
| T12 | 994-997 | gene:7157 | denotes | p53 |
| T13 | 1098-1104 | disease:C1306459 | denotes | cancer |
| T14 | 994-997 | gene:7157 | denotes | p53 |
| T15 | 1098-1104 | disease:C0006826 | denotes | cancer |
| T16 | 1062-1068 | gene:1576 | denotes | CYP3A4 |
| T17 | 1098-1104 | disease:C0006826 | denotes | cancer |
| T18 | 1218-1224 | gene:1576 | denotes | CYP3A4 |
| T19 | 1098-1104 | disease:C1306459 | denotes | cancer |
| T20 | 1145-1148 | gene:7157 | denotes | p53 |
| T21 | 1098-1104 | disease:C0006826 | denotes | cancer |
| T22 | 1145-1148 | gene:7157 | denotes | p53 |
| T23 | 1098-1104 | disease:C1306459 | denotes | cancer |
| T24 | 1174-1180 | gene:1576 | denotes | CYP3A4 |
| T25 | 1098-1104 | disease:C0006826 | denotes | cancer |
| T26 | 1174-1180 | gene:1576 | denotes | CYP3A4 |
| T27 | 1098-1104 | disease:C1306459 | denotes | cancer |
| T28 | 1218-1224 | gene:1576 | denotes | CYP3A4 |
| T29 | 1098-1104 | disease:C0006826 | denotes | cancer |
| T30 | 1062-1068 | gene:1576 | denotes | CYP3A4 |
| T31 | 1098-1104 | disease:C1306459 | denotes | cancer |
| T32 | 1286-1289 | gene:7157 | denotes | p53 |
| T33 | 1337-1344 | disease:C0006826 | denotes | cancers |
| T34 | 1371-1374 | gene:7157 | denotes | p53 |
| T35 | 1380-1386 | disease:C0006826 | denotes | cancer |
| T36 | 1371-1374 | gene:7157 | denotes | p53 |
| T37 | 1380-1386 | disease:C1306459 | denotes | cancer |
| R1 | T0 | T1 | associated_with | p53,cancers |
| R2 | T2 | T3 | associated_with | p53,cancer |
| R3 | T4 | T5 | associated_with | p53,cancer |
| R4 | T6 | T7 | associated_with | p53,cancer |
| R5 | T8 | T9 | associated_with | p53,cancer |
| R6 | T10 | T11 | associated_with | p53,cancers |
| R7 | T12 | T13 | associated_with | p53,cancer |
| R8 | T14 | T15 | associated_with | p53,cancer |
| R9 | T16 | T17 | associated_with | CYP3A4,cancer |
| R10 | T18 | T19 | associated_with | CYP3A4,cancer |
| R11 | T20 | T21 | associated_with | p53,cancer |
| R12 | T22 | T23 | associated_with | p53,cancer |
| R13 | T24 | T25 | associated_with | CYP3A4,cancer |
| R14 | T26 | T27 | associated_with | CYP3A4,cancer |
| R15 | T28 | T29 | associated_with | CYP3A4,cancer |
| R16 | T30 | T31 | associated_with | CYP3A4,cancer |
| R17 | T32 | T33 | associated_with | p53,cancers |
| R18 | T34 | T35 | associated_with | p53,cancer |
| R19 | T36 | T37 | associated_with | p53,cancer |
PubmedHPO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 183-189 | HP_0002664 | denotes | cancer |
| T2 | 523-529 | HP_0002664 | denotes | cancer |
| T3 | 623-630 | HP_0002664 | denotes | cancers |
| T4 | 1098-1104 | HP_0002664 | denotes | cancer |
| T5 | 1337-1344 | HP_0002664 | denotes | cancers |
| T6 | 1380-1386 | HP_0002664 | denotes | cancer |
| T7 | 1446-1451 | HP_0002664 | denotes | tumor |
Allie
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| SS1_24603336_1_0 | 270-303 | expanded | denotes | gain of novel oncogenic functions |
| SS2_24603336_1_0 | 305-308 | abbr | denotes | GOF |
| AE1_24603336_1_0 | SS1_24603336_1_0 | SS2_24603336_1_0 | abbreviatedTo | gain of novel oncogenic functions,GOF |
kaiyin_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T30 | 600-603 | Gene | denotes | p53 |
| T10 | 651-685 | Var | denotes | mutations on the Arg248 and Arg282 |
| T29 | 735-742 | NegReg | denotes | shorter |
| T12 | 743-759 | CPA | denotes | patient survival |
| T21 | 869-878 | Var | denotes | mutations |
| T13 | 888-894 | PosReg | denotes | higher |
| T14 | 895-903 | MPA | denotes | activity |
| T32 | 907-932 | Enzyme | denotes | drug-metabolizing enzymes |
| T33 | 948-970 | Enzyme | denotes | CYP3A4 cytochrome P450 |
| T22 | 972-990 | MPA | denotes | Ectopic expression |
| T23 | 994-997 | Gene | denotes | p53 |
| T24 | 998-1010 | Var | denotes | mutant R282W |
| T16 | 1050-1061 | PosReg | denotes | upregulated |
| T17 | 1062-1092 | MPA | denotes | CYP3A4 mRNA and protein levels |
| T25 | 1145-1148 | Gene | denotes | p53 |
| T26 | 1149-1158 | Var | denotes | mutations |
| T18 | 1167-1173 | PosReg | denotes | higher |
| T31 | 1174-1180 | Enzyme | denotes | CYP3A4 |
| T19 | 1181-1191 | MPA | denotes | expression |
| T20 | 1196-1259 | CPA | denotes | resistance to several CYP3A4-metabolized chemotherapeutic drugs |
| R10 | T21 | T13 | CauseOf | mutations,higher |
| R11 | T14 | T13 | ThemeOf | activity,higher |
| R12 | T23 | T24 | ThemeOf | p53,mutant R282W |
| R13 | T24 | T22 | ThemeOf | mutant R282W,Ectopic expression |
| R14 | T22 | T16 | CauseOf | Ectopic expression,upregulated |
| R15 | T17 | T16 | ThemeOf | CYP3A4 mRNA and protein levels,upregulated |
| R16 | T19 | T18 | ThemeOf | expression,higher |
| R17 | T20 | T18 | ThemeOf | resistance to several CYP3A4-metabolized chemotherapeutic drugs,higher |
| R18 | T25 | T26 | ThemeOf | p53,mutations |
| R19 | T26 | T18 | CauseOf | mutations,higher |
| R22 | T10 | T29 | CauseOf | mutations on the Arg248 and Arg282,shorter |
| R23 | T12 | T29 | ThemeOf | patient survival,shorter |
| R24 | T30 | T10 | ThemeOf | p53,mutations on the Arg248 and Arg282 |
| R25 | T32 | T14 | ThemeOf | drug-metabolizing enzymes,activity |
| R26 | T33 | T32 | ThemeOf | CYP3A4 cytochrome P450,drug-metabolizing enzymes |
| R27 | T31 | T19 | ThemeOf | CYP3A4,expression |
name_no
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T30 | 600-603 | Gene | denotes | p53 |
| T10 | 651-685 | Var | denotes | mutations on the Arg248 and Arg282 |
| T29 | 735-742 | NegReg | denotes | shorter |
| T12 | 743-759 | CPA | denotes | patient survival |
| T21 | 869-878 | Var | denotes | mutations |
| T13 | 888-894 | PosReg | denotes | higher |
| T14 | 895-903 | MPA | denotes | activity |
| T32 | 907-932 | Enzyme | denotes | drug-metabolizing enzymes |
| T33 | 948-970 | Enzyme | denotes | CYP3A4 cytochrome P450 |
| T22 | 972-990 | MPA | denotes | Ectopic expression |
| T23 | 994-997 | Gene | denotes | p53 |
| T24 | 998-1010 | Var | denotes | mutant R282W |
| T16 | 1050-1061 | PosReg | denotes | upregulated |
| T17 | 1062-1092 | MPA | denotes | CYP3A4 mRNA and protein levels |
| T25 | 1145-1148 | Gene | denotes | p53 |
| T26 | 1149-1158 | Var | denotes | mutations |
| T18 | 1167-1173 | PosReg | denotes | higher |
| T31 | 1174-1180 | Enzyme | denotes | CYP3A4 |
| T19 | 1181-1191 | MPA | denotes | expression |
| T20 | 1196-1259 | CPA | denotes | resistance to several CYP3A4-metabolized chemotherapeutic drugs |
| R10 | T21 | T13 | CauseOf | mutations,higher |
| R11 | T14 | T13 | ThemeOf | activity,higher |
| R12 | T23 | T24 | ThemeOf | p53,mutant R282W |
| R13 | T24 | T22 | ThemeOf | mutant R282W,Ectopic expression |
| R14 | T22 | T16 | CauseOf | Ectopic expression,upregulated |
| R15 | T17 | T16 | ThemeOf | CYP3A4 mRNA and protein levels,upregulated |
| R16 | T19 | T18 | ThemeOf | expression,higher |
| R17 | T20 | T18 | ThemeOf | resistance to several CYP3A4-metabolized chemotherapeutic drugs,higher |
| R18 | T25 | T26 | ThemeOf | p53,mutations |
| R19 | T26 | T18 | CauseOf | mutations,higher |
| R22 | T10 | T29 | CauseOf | mutations on the Arg248 and Arg282,shorter |
| R23 | T12 | T29 | ThemeOf | patient survival,shorter |
| R24 | T30 | T10 | ThemeOf | p53,mutations on the Arg248 and Arg282 |
| R25 | T32 | T14 | ThemeOf | drug-metabolizing enzymes,activity |
| R26 | T33 | T32 | ThemeOf | CYP3A4 cytochrome P450,drug-metabolizing enzymes |
| R27 | T31 | T19 | ThemeOf | CYP3A4,expression |