PubMed:24443562 JSONTXT

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    GlyCosmos6-UBERON

    {"project":"GlyCosmos6-UBERON","denotations":[{"id":"T1","span":{"begin":108,"end":117},"obj":"Body_part"},{"id":"T2","span":{"begin":442,"end":447},"obj":"Body_part"},{"id":"T4","span":{"begin":540,"end":544},"obj":"Body_part"},{"id":"T5","span":{"begin":980,"end":989},"obj":"Body_part"},{"id":"T6","span":{"begin":1084,"end":1093},"obj":"Body_part"},{"id":"T7","span":{"begin":1379,"end":1387},"obj":"Body_part"},{"id":"T8","span":{"begin":1468,"end":1476},"obj":"Body_part"},{"id":"T9","span":{"begin":1558,"end":1563},"obj":"Body_part"}],"text":"The Saccharomyces cerevisiae Mlh1-Mlh3 heterodimer is an endonuclease that preferentially binds to Holliday junctions.\nMutLγ, a heterodimer of the MutL homologues Mlh1 and Mlh3, plays a critical role during meiotic homologous recombination. The meiotic function of Mlh3 is fully dependent on the integrity of a putative nuclease motif DQHAX2EX4E, inferring that the anticipated nuclease activity of Mlh1-Mlh3 is involved in the processing of joint molecules to generate crossover recombination products. Although a vast body of genetic and cell biological data regarding Mlh1-Mlh3 is available, mechanistic insights into its function have been lacking due to the unavailability of the recombinant protein complex. Here we expressed the yeast Mlh1-Mlh3 heterodimer and purified it into near homogeneity. We show that recombinant MutLγ is a nuclease that nicks double-stranded DNA. We demonstrate that MutLγ binds DNA with a high affinity and shows a marked preference for Holliday junctions. We also expressed the human MLH1-MLH3 complex and show that preferential binding to Holliday junctions is a conserved capacity of eukaryotic MutLγ complexes. Specific DNA recognition has never been observed with any other eukaryotic MutL homologue. MutLγ thus represents a new paradigm for the function of the eukaryotic MutL protein family. We provide insights into the mode of Holliday junction recognition and show that Mlh1-Mlh3 prefers to bind the open unstacked Holliday junction form. This further supports the model where MutLγ is part of a complex acting on joint molecules to generate crossovers in meiosis."}

    PubMed_ArguminSci

    {"project":"PubMed_ArguminSci","denotations":[{"id":"T6","span":{"begin":880,"end":990},"obj":"DRI_Approach"},{"id":"T7","span":{"begin":991,"end":1148},"obj":"DRI_Outcome"},{"id":"T8","span":{"begin":1149,"end":1239},"obj":"DRI_Outcome"},{"id":"T9","span":{"begin":1240,"end":1332},"obj":"DRI_Approach"},{"id":"T10","span":{"begin":1333,"end":1482},"obj":"DRI_Outcome"},{"id":"T11","span":{"begin":1483,"end":1608},"obj":"DRI_Approach"},{"id":"T1","span":{"begin":119,"end":240},"obj":"DRI_Challenge"},{"id":"T2","span":{"begin":241,"end":503},"obj":"DRI_Challenge"},{"id":"T3","span":{"begin":504,"end":713},"obj":"DRI_Background"},{"id":"T4","span":{"begin":714,"end":802},"obj":"DRI_Approach"},{"id":"T5","span":{"begin":803,"end":879},"obj":"DRI_Approach"}],"text":"The Saccharomyces cerevisiae Mlh1-Mlh3 heterodimer is an endonuclease that preferentially binds to Holliday junctions.\nMutLγ, a heterodimer of the MutL homologues Mlh1 and Mlh3, plays a critical role during meiotic homologous recombination. The meiotic function of Mlh3 is fully dependent on the integrity of a putative nuclease motif DQHAX2EX4E, inferring that the anticipated nuclease activity of Mlh1-Mlh3 is involved in the processing of joint molecules to generate crossover recombination products. Although a vast body of genetic and cell biological data regarding Mlh1-Mlh3 is available, mechanistic insights into its function have been lacking due to the unavailability of the recombinant protein complex. Here we expressed the yeast Mlh1-Mlh3 heterodimer and purified it into near homogeneity. We show that recombinant MutLγ is a nuclease that nicks double-stranded DNA. We demonstrate that MutLγ binds DNA with a high affinity and shows a marked preference for Holliday junctions. We also expressed the human MLH1-MLH3 complex and show that preferential binding to Holliday junctions is a conserved capacity of eukaryotic MutLγ complexes. Specific DNA recognition has never been observed with any other eukaryotic MutL homologue. MutLγ thus represents a new paradigm for the function of the eukaryotic MutL protein family. We provide insights into the mode of Holliday junction recognition and show that Mlh1-Mlh3 prefers to bind the open unstacked Holliday junction form. This further supports the model where MutLγ is part of a complex acting on joint molecules to generate crossovers in meiosis."}

    c_corpus

    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obj":"CHEBI:36080"},{"id":"T164","span":{"begin":1317,"end":1324},"obj":"CHEBI:11122"},{"id":"T166","span":{"begin":1317,"end":1324},"obj":"SO:0000104"},{"id":"T162","span":{"begin":1317,"end":1324},"obj":"GO:0003675"},{"id":"T167","span":{"begin":1370,"end":1387},"obj":"D045566"},{"id":"T169","span":{"begin":1379,"end":1387},"obj":"SO:0000699"},{"id":"T168","span":{"begin":1379,"end":1387},"obj":"UBERON:0007651"},{"id":"T170","span":{"begin":1414,"end":1418},"obj":"PR:Q9ZRV4"},{"id":"T171","span":{"begin":1414,"end":1418},"obj":"PR:P38920"},{"id":"T172","span":{"begin":1414,"end":1418},"obj":"PR:Q54KD8"},{"id":"T174","span":{"begin":1414,"end":1418},"obj":"PR:Q9JK91"},{"id":"T175","span":{"begin":1414,"end":1418},"obj":"PR:P97679"},{"id":"T176","span":{"begin":1414,"end":1418},"obj":"PR:Q9P7W6"},{"id":"T177","span":{"begin":1414,"end":1418},"obj":"PR:000010442"},{"id":"T178","span":{"begin":1414,"end":1418},"obj":"PR:P40692"},{"id":"T173","span":{"begin":1414,"end":1418},"obj":"CVCL_G669"},{"id":"T179","span":{"begin":1419,"end":1423},"obj":"PR:F4JN26"},{"id":"T180","span":{"begin":1419,"end":1423},"obj":"PR:Q12083"},{"id":"T181","span":{"begin":1419,"end":1423},"obj":"PR:000010443"},{"id":"T182","span":{"begin":1419,"end":1423},"obj":"PR:Q9UHC1"},{"id":"T183","span":{"begin":1459,"end":1476},"obj":"D045566"},{"id":"T185","span":{"begin":1468,"end":1476},"obj":"SO:0000699"},{"id":"T184","span":{"begin":1468,"end":1476},"obj":"UBERON:0007651"},{"id":"T186","span":{"begin":1521,"end":1525},"obj":"PR:000023324"},{"id":"T187","span":{"begin":1521,"end":1525},"obj":"PR:Q93T05"},{"id":"T188","span":{"begin":1521,"end":1525},"obj":"PR:P23367"},{"id":"T189","span":{"begin":1558,"end":1563},"obj":"UBERON:0004905"},{"id":"T190","span":{"begin":1558,"end":1563},"obj":"UBERON:0000982"},{"id":"T191","span":{"begin":1564,"end":1573},"obj":"CHEBI:25367"},{"id":"T192","span":{"begin":1600,"end":1607},"obj":"GO:0051321"}],"text":"The Saccharomyces cerevisiae Mlh1-Mlh3 heterodimer is an endonuclease that preferentially binds to Holliday junctions.\nMutLγ, a heterodimer of the MutL homologues Mlh1 and Mlh3, plays a critical role during meiotic homologous recombination. The meiotic function of Mlh3 is fully dependent on the integrity of a putative nuclease motif DQHAX2EX4E, inferring that the anticipated nuclease activity of Mlh1-Mlh3 is involved in the processing of joint molecules to generate crossover recombination products. Although a vast body of genetic and cell biological data regarding Mlh1-Mlh3 is available, mechanistic insights into its function have been lacking due to the unavailability of the recombinant protein complex. Here we expressed the yeast Mlh1-Mlh3 heterodimer and purified it into near homogeneity. We show that recombinant MutLγ is a nuclease that nicks double-stranded DNA. We demonstrate that MutLγ binds DNA with a high affinity and shows a marked preference for Holliday junctions. We also expressed the human MLH1-MLH3 complex and show that preferential binding to Holliday junctions is a conserved capacity of eukaryotic MutLγ complexes. Specific DNA recognition has never been observed with any other eukaryotic MutL homologue. MutLγ thus represents a new paradigm for the function of the eukaryotic MutL protein family. We provide insights into the mode of Holliday junction recognition and show that Mlh1-Mlh3 prefers to bind the open unstacked Holliday junction form. This further supports the model where MutLγ is part of a complex acting on joint molecules to generate crossovers in meiosis."}

    sentences

    {"project":"sentences","denotations":[{"id":"T1","span":{"begin":0,"end":118},"obj":"Sentence"},{"id":"T2","span":{"begin":119,"end":240},"obj":"Sentence"},{"id":"T3","span":{"begin":241,"end":503},"obj":"Sentence"},{"id":"T4","span":{"begin":504,"end":713},"obj":"Sentence"},{"id":"T5","span":{"begin":714,"end":802},"obj":"Sentence"},{"id":"T6","span":{"begin":803,"end":879},"obj":"Sentence"},{"id":"T7","span":{"begin":880,"end":990},"obj":"Sentence"},{"id":"T8","span":{"begin":991,"end":1148},"obj":"Sentence"},{"id":"T9","span":{"begin":1149,"end":1239},"obj":"Sentence"},{"id":"T10","span":{"begin":1240,"end":1332},"obj":"Sentence"},{"id":"T11","span":{"begin":1333,"end":1482},"obj":"Sentence"},{"id":"T12","span":{"begin":1483,"end":1608},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The Saccharomyces cerevisiae Mlh1-Mlh3 heterodimer is an endonuclease that preferentially binds to Holliday junctions.\nMutLγ, a heterodimer of the MutL homologues Mlh1 and Mlh3, plays a critical role during meiotic homologous recombination. The meiotic function of Mlh3 is fully dependent on the integrity of a putative nuclease motif DQHAX2EX4E, inferring that the anticipated nuclease activity of Mlh1-Mlh3 is involved in the processing of joint molecules to generate crossover recombination products. Although a vast body of genetic and cell biological data regarding Mlh1-Mlh3 is available, mechanistic insights into its function have been lacking due to the unavailability of the recombinant protein complex. Here we expressed the yeast Mlh1-Mlh3 heterodimer and purified it into near homogeneity. We show that recombinant MutLγ is a nuclease that nicks double-stranded DNA. We demonstrate that MutLγ binds DNA with a high affinity and shows a marked preference for Holliday junctions. We also expressed the human MLH1-MLH3 complex and show that preferential binding to Holliday junctions is a conserved capacity of eukaryotic MutLγ complexes. Specific DNA recognition has never been observed with any other eukaryotic MutL homologue. MutLγ thus represents a new paradigm for the function of the eukaryotic MutL protein family. We provide insights into the mode of Holliday junction recognition and show that Mlh1-Mlh3 prefers to bind the open unstacked Holliday junction form. This further supports the model where MutLγ is part of a complex acting on joint molecules to generate crossovers in meiosis."}

    NCBITAXON

    {"project":"NCBITAXON","denotations":[{"id":"T1","span":{"begin":4,"end":28},"obj":"OrganismTaxon"},{"id":"T2","span":{"begin":1013,"end":1018},"obj":"OrganismTaxon"}],"attributes":[{"id":"A1","pred":"db_id","subj":"T1","obj":"NCBItxid:4932"},{"id":"A2","pred":"db_id","subj":"T2","obj":"NCBItxid:9606"}],"text":"The Saccharomyces cerevisiae Mlh1-Mlh3 heterodimer is an endonuclease that preferentially binds to Holliday junctions.\nMutLγ, a heterodimer of the MutL homologues Mlh1 and Mlh3, plays a critical role during meiotic homologous recombination. The meiotic function of Mlh3 is fully dependent on the integrity of a putative nuclease motif DQHAX2EX4E, inferring that the anticipated nuclease activity of Mlh1-Mlh3 is involved in the processing of joint molecules to generate crossover recombination products. Although a vast body of genetic and cell biological data regarding Mlh1-Mlh3 is available, mechanistic insights into its function have been lacking due to the unavailability of the recombinant protein complex. Here we expressed the yeast Mlh1-Mlh3 heterodimer and purified it into near homogeneity. We show that recombinant MutLγ is a nuclease that nicks double-stranded DNA. We demonstrate that MutLγ binds DNA with a high affinity and shows a marked preference for Holliday junctions. We also expressed the human MLH1-MLH3 complex and show that preferential binding to Holliday junctions is a conserved capacity of eukaryotic MutLγ complexes. Specific DNA recognition has never been observed with any other eukaryotic MutL homologue. MutLγ thus represents a new paradigm for the function of the eukaryotic MutL protein family. We provide insights into the mode of Holliday junction recognition and show that Mlh1-Mlh3 prefers to bind the open unstacked Holliday junction form. This further supports the model where MutLγ is part of a complex acting on joint molecules to generate crossovers in meiosis."}

    GlyCosmos6-CLO

    {"project":"GlyCosmos6-CLO","denotations":[{"id":"T1","span":{"begin":29,"end":33},"obj":"http://purl.obolibrary.org/obo/CLO_0007748"},{"id":"T2","span":{"begin":163,"end":167},"obj":"http://purl.obolibrary.org/obo/CLO_0007748"},{"id":"T3","span":{"begin":387,"end":395},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T4","span":{"begin":399,"end":403},"obj":"http://purl.obolibrary.org/obo/CLO_0007748"},{"id":"T5","span":{"begin":540,"end":544},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T6","span":{"begin":571,"end":575},"obj":"http://purl.obolibrary.org/obo/CLO_0007748"},{"id":"T7","span":{"begin":697,"end":712},"obj":"http://purl.obolibrary.org/obo/GO_0043234"},{"id":"T8","span":{"begin":742,"end":746},"obj":"http://purl.obolibrary.org/obo/CLO_0007748"},{"id":"T9","span":{"begin":1019,"end":1023},"obj":"http://purl.obolibrary.org/obo/CLO_0007748"},{"id":"T10","span":{"begin":1414,"end":1418},"obj":"http://purl.obolibrary.org/obo/CLO_0007748"}],"text":"The Saccharomyces cerevisiae Mlh1-Mlh3 heterodimer is an endonuclease that preferentially binds to Holliday junctions.\nMutLγ, a heterodimer of the MutL homologues Mlh1 and Mlh3, plays a critical role during meiotic homologous recombination. The meiotic function of Mlh3 is fully dependent on the integrity of a putative nuclease motif DQHAX2EX4E, inferring that the anticipated nuclease activity of Mlh1-Mlh3 is involved in the processing of joint molecules to generate crossover recombination products. Although a vast body of genetic and cell biological data regarding Mlh1-Mlh3 is available, mechanistic insights into its function have been lacking due to the unavailability of the recombinant protein complex. Here we expressed the yeast Mlh1-Mlh3 heterodimer and purified it into near homogeneity. We show that recombinant MutLγ is a nuclease that nicks double-stranded DNA. We demonstrate that MutLγ binds DNA with a high affinity and shows a marked preference for Holliday junctions. We also expressed the human MLH1-MLH3 complex and show that preferential binding to Holliday junctions is a conserved capacity of eukaryotic MutLγ complexes. Specific DNA recognition has never been observed with any other eukaryotic MutL homologue. MutLγ thus represents a new paradigm for the function of the eukaryotic MutL protein family. We provide insights into the mode of Holliday junction recognition and show that Mlh1-Mlh3 prefers to bind the open unstacked Holliday junction form. This further supports the model where MutLγ is part of a complex acting on joint molecules to generate crossovers in meiosis."}

    UseCases_ArguminSci_Discourse

    {"project":"UseCases_ArguminSci_Discourse","denotations":[{"id":"T1","span":{"begin":0,"end":118},"obj":"DRI_Approach"},{"id":"T2","span":{"begin":119,"end":240},"obj":"DRI_Challenge"},{"id":"T3","span":{"begin":241,"end":503},"obj":"DRI_Challenge"},{"id":"T4","span":{"begin":504,"end":713},"obj":"DRI_Background"},{"id":"T5","span":{"begin":714,"end":802},"obj":"DRI_Approach"},{"id":"T6","span":{"begin":803,"end":879},"obj":"DRI_Approach"},{"id":"T7","span":{"begin":880,"end":990},"obj":"DRI_Approach"},{"id":"T8","span":{"begin":991,"end":1148},"obj":"DRI_Outcome"},{"id":"T9","span":{"begin":1149,"end":1239},"obj":"DRI_Outcome"},{"id":"T10","span":{"begin":1240,"end":1332},"obj":"DRI_Approach"},{"id":"T11","span":{"begin":1333,"end":1482},"obj":"DRI_Outcome"},{"id":"T12","span":{"begin":1483,"end":1608},"obj":"DRI_Approach"}],"text":"The Saccharomyces cerevisiae Mlh1-Mlh3 heterodimer is an endonuclease that preferentially binds to Holliday junctions.\nMutLγ, a heterodimer of the MutL homologues Mlh1 and Mlh3, plays a critical role during meiotic homologous recombination. The meiotic function of Mlh3 is fully dependent on the integrity of a putative nuclease motif DQHAX2EX4E, inferring that the anticipated nuclease activity of Mlh1-Mlh3 is involved in the processing of joint molecules to generate crossover recombination products. Although a vast body of genetic and cell biological data regarding Mlh1-Mlh3 is available, mechanistic insights into its function have been lacking due to the unavailability of the recombinant protein complex. Here we expressed the yeast Mlh1-Mlh3 heterodimer and purified it into near homogeneity. We show that recombinant MutLγ is a nuclease that nicks double-stranded DNA. We demonstrate that MutLγ binds DNA with a high affinity and shows a marked preference for Holliday junctions. We also expressed the human MLH1-MLH3 complex and show that preferential binding to Holliday junctions is a conserved capacity of eukaryotic MutLγ complexes. Specific DNA recognition has never been observed with any other eukaryotic MutL homologue. MutLγ thus represents a new paradigm for the function of the eukaryotic MutL protein family. We provide insights into the mode of Holliday junction recognition and show that Mlh1-Mlh3 prefers to bind the open unstacked Holliday junction form. This further supports the model where MutLγ is part of a complex acting on joint molecules to generate crossovers in meiosis."}