> top > docs > PubMed:24192013 > annotations

PubMed:24192013 JSONTXT

Annnotations TAB JSON ListView MergeView

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 775-787 hunflair:NA:Species denotes Oryza sativa
M_1 766-772 hunflair:NA:Gene denotes AtCPKs
M_2 954-960 hunflair:NA:Gene denotes AtCPKs
M_3 789-795 hunflair:NA:Gene denotes OsCPKs
M_4 984-990 hunflair:NA:Gene denotes OsCPKs
M_5 1613-1630 hunflair:NA:Gene denotes MdCPK gene family
M_6 107-124 hunflair:NA:Species denotes Malus x domestica
M_7 612-629 hunflair:NA:Species denotes Malus x domestica
M_8 1634-1651 hunflair:NA:Species denotes Malus x domestica
M_9 744-764 hunflair:NA:Species denotes Arabidopsis thaliana
M_10 371-401 hunflair:NA:Gene denotes Ca2+-dependent protein kinases
M_11 820-826 hunflair:NA:Gene denotes PtCPKs
M_12 965-971 hunflair:NA:Gene denotes PtCPKs
M_13 1323-1330 hunflair:NA:Chemical denotes Calcium
M_14 924-930 hunflair:NA:Gene denotes MdCPKs
M_15 1494-1500 hunflair:NA:Gene denotes MdCPKs
M_16 1799-1805 hunflair:NA:Gene denotes MdCPKs
M_17 2047-2053 hunflair:NA:Gene denotes MdCPKs
M_18 215-222 hunflair:NA:Chemical denotes calcium
M_19 1123-1130 hunflair:NA:Chemical denotes calcium
M_20 1721-1728 hunflair:NA:Chemical denotes calcium
M_21 1922-1934 hunflair:NA:Species denotes E. amylovora
M_22 479-497 hunflair:NA:Disease denotes pathogen infection
M_23 1541-1559 hunflair:NA:Disease denotes pathogen infection
M_24 1744-1762 hunflair:NA:Disease denotes pathogen infection
M_25 720-730 hunflair:NA:Gene denotes Malus CPKs
M_26 842-848 hunflair:NA:Gene denotes ZmCPKs
M_27 995-1001 hunflair:NA:Gene denotes ZmCPKs
M_28 798-818 hunflair:NA:Species denotes Populous trichocarpa
M_29 630-633 hunflair:NA:Gene denotes CPK
M_30 672-675 hunflair:NA:Gene denotes CPK
M_31 27-31 hunflair:NA:Gene denotes CPKs
M_32 403-407 hunflair:NA:Gene denotes CPKs
M_33 726-730 hunflair:NA:Gene denotes CPKs
M_34 736-740 hunflair:NA:Gene denotes CPKs
M_35 90-95 hunflair:NA:Species denotes apple
M_36 1225-1230 hunflair:NA:Species denotes apple
M_37 2115-2120 hunflair:NA:Species denotes apple
M_38 832-840 hunflair:NA:Species denotes Zea mays
M_39 154-171 hunflair:NA:Species denotes Erwinia amylovora
M_40 1278-1295 hunflair:NA:Species denotes Erwinia amylovora
M_41 46-49 hunflair:NA:Chemical denotes Ca2
M_42 224-227 hunflair:NA:Chemical denotes Ca2
M_43 333-336 hunflair:NA:Chemical denotes Ca2
M_44 371-374 hunflair:NA:Chemical denotes Ca2
M_45 461-464 hunflair:NA:Chemical denotes Ca2
M_46 1133-1136 hunflair:NA:Chemical denotes Ca2
M_47 1361-1364 hunflair:NA:Chemical denotes Ca2
M_48 1828-1831 hunflair:NA:Chemical denotes Ca2
M_49 1210-1224 hunflair:NA:Species denotes M. x domestica
M_50 1882-1896 hunflair:NA:Species denotes M. x domestica

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 36-45 http://identifiers.org/oryzabase.gene/9457 denotes cytosolic
T2 36-45 http://identifiers.org/oryzabase.gene/7167 denotes cytosolic
T3 36-45 http://identifiers.org/oryzabase.gene/7166 denotes cytosolic
T4 36-45 http://identifiers.org/oryzabase.gene/6431 denotes cytosolic
T5 36-45 http://identifiers.org/oryzabase.gene/456 denotes cytosolic
T6 36-45 http://identifiers.org/oryzabase.gene/17646 denotes cytosolic
T7 36-45 http://identifiers.org/oryzabase.gene/14451 denotes cytosolic
T8 1113-1122 http://identifiers.org/oryzabase.gene/9457 denotes cytosolic
T9 1113-1122 http://identifiers.org/oryzabase.gene/7167 denotes cytosolic
T10 1113-1122 http://identifiers.org/oryzabase.gene/7166 denotes cytosolic
T11 1113-1122 http://identifiers.org/oryzabase.gene/6431 denotes cytosolic
T12 1113-1122 http://identifiers.org/oryzabase.gene/456 denotes cytosolic
T13 1113-1122 http://identifiers.org/oryzabase.gene/17646 denotes cytosolic
T14 1113-1122 http://identifiers.org/oryzabase.gene/14451 denotes cytosolic
T15 1711-1720 http://identifiers.org/oryzabase.gene/9457 denotes cytosolic
T16 1711-1720 http://identifiers.org/oryzabase.gene/7167 denotes cytosolic
T17 1711-1720 http://identifiers.org/oryzabase.gene/7166 denotes cytosolic
T18 1711-1720 http://identifiers.org/oryzabase.gene/6431 denotes cytosolic
T19 1711-1720 http://identifiers.org/oryzabase.gene/456 denotes cytosolic
T20 1711-1720 http://identifiers.org/oryzabase.gene/17646 denotes cytosolic
T21 1711-1720 http://identifiers.org/oryzabase.gene/14451 denotes cytosolic
T9241 36-45 http://identifiers.org/ricegap/LOC_Os07g49400 denotes cytosolic
T65349 36-45 http://identifiers.org/ricegap/LOC_Os07g46990 denotes cytosolic
T35436 36-45 http://identifiers.org/ricegap/LOC_Os06g45710 denotes cytosolic
T73344 36-45 http://identifiers.org/ricegap/LOC_Os03g22810 denotes cytosolic
T15556 36-45 http://identifiers.org/ricegap/LOC_Os03g17690 denotes cytosolic
T57507 36-45 http://identifiers.org/ricegap/LOC_Os02g07260 denotes cytosolic
T54926 36-45 http://identifiers.org/ricegap/LOC_Os01g05490 denotes cytosolic
T48136 386-401 http://identifiers.org/ricegap/LOC_Os07g04820 denotes protein kinases
T57769 386-401 http://identifiers.org/ricegap/LOC_Os06g18000 denotes protein kinases
T62667 386-401 http://identifiers.org/ricegap/LOC_Os06g13320 denotes protein kinases
T65311 386-401 http://identifiers.org/ricegap/LOC_Os01g02830 denotes protein kinases
T5352 1113-1122 http://identifiers.org/ricegap/LOC_Os07g49400 denotes cytosolic
T77461 1113-1122 http://identifiers.org/ricegap/LOC_Os07g46990 denotes cytosolic
T56950 1113-1122 http://identifiers.org/ricegap/LOC_Os06g45710 denotes cytosolic
T36783 1113-1122 http://identifiers.org/ricegap/LOC_Os03g22810 denotes cytosolic
T12713 1113-1122 http://identifiers.org/ricegap/LOC_Os03g17690 denotes cytosolic
T40239 1113-1122 http://identifiers.org/ricegap/LOC_Os02g07260 denotes cytosolic
T7232 1113-1122 http://identifiers.org/ricegap/LOC_Os01g05490 denotes cytosolic
T12429 1711-1720 http://identifiers.org/ricegap/LOC_Os07g49400 denotes cytosolic
T54153 1711-1720 http://identifiers.org/ricegap/LOC_Os07g46990 denotes cytosolic
T84533 1711-1720 http://identifiers.org/ricegap/LOC_Os06g45710 denotes cytosolic
T22 1711-1720 http://identifiers.org/ricegap/LOC_Os03g22810 denotes cytosolic
T23 1711-1720 http://identifiers.org/ricegap/LOC_Os03g17690 denotes cytosolic
T24 1711-1720 http://identifiers.org/ricegap/LOC_Os02g07260 denotes cytosolic
T25 1711-1720 http://identifiers.org/ricegap/LOC_Os01g05490 denotes cytosolic
T93537 36-45 http://identifiers.org/rapdb.locus/Os07g0694700 denotes cytosolic
T7613 36-45 http://identifiers.org/rapdb.locus/Os07g0665200 denotes cytosolic
T32205 36-45 http://identifiers.org/rapdb.locus/Os06g0668200 denotes cytosolic
T14876 36-45 http://identifiers.org/rapdb.locus/Os03g0351500 denotes cytosolic
T47533 36-45 http://identifiers.org/rapdb.locus/Os03g0285700 denotes cytosolic
T2557 36-45 http://identifiers.org/rapdb.locus/Os02g0169300 denotes cytosolic
T56128 36-45 http://identifiers.org/rapdb.locus/Os01g0147900 denotes cytosolic
T66806 386-401 http://identifiers.org/rapdb.locus/Os06g0288100 denotes protein kinases
T49708 386-401 http://identifiers.org/rapdb.locus/Os06g0241100 denotes protein kinases
T76001 386-401 http://identifiers.org/rapdb.locus/Os01g0117600 denotes protein kinases
T74341 1113-1122 http://identifiers.org/rapdb.locus/Os07g0694700 denotes cytosolic
T68427 1113-1122 http://identifiers.org/rapdb.locus/Os07g0665200 denotes cytosolic
T3071 1113-1122 http://identifiers.org/rapdb.locus/Os06g0668200 denotes cytosolic
T89331 1113-1122 http://identifiers.org/rapdb.locus/Os03g0351500 denotes cytosolic
T56897 1113-1122 http://identifiers.org/rapdb.locus/Os03g0285700 denotes cytosolic
T4460 1113-1122 http://identifiers.org/rapdb.locus/Os02g0169300 denotes cytosolic
T73598 1113-1122 http://identifiers.org/rapdb.locus/Os01g0147900 denotes cytosolic
T91631 1711-1720 http://identifiers.org/rapdb.locus/Os07g0694700 denotes cytosolic
T63663 1711-1720 http://identifiers.org/rapdb.locus/Os07g0665200 denotes cytosolic
T3333 1711-1720 http://identifiers.org/rapdb.locus/Os06g0668200 denotes cytosolic
T33660 1711-1720 http://identifiers.org/rapdb.locus/Os03g0351500 denotes cytosolic
T21256 1711-1720 http://identifiers.org/rapdb.locus/Os03g0285700 denotes cytosolic
T96179 1711-1720 http://identifiers.org/rapdb.locus/Os02g0169300 denotes cytosolic
T54069 1711-1720 http://identifiers.org/rapdb.locus/Os01g0147900 denotes cytosolic
T23719 36-45 http://identifiers.org/uniprot/Q9FE01 denotes cytosolic
T81049 36-45 http://identifiers.org/uniprot/Q10N21 denotes cytosolic
T49419 36-45 http://identifiers.org/uniprot/Q0DRV6 denotes cytosolic
T74861 36-45 http://identifiers.org/uniprot/P48494 denotes cytosolic
T60808 36-45 http://identifiers.org/uniprot/P28757 denotes cytosolic
T13312 36-45 http://identifiers.org/uniprot/B8AIH2 denotes cytosolic
T73214 36-45 http://identifiers.org/uniprot/A2YG06 denotes cytosolic
T83982 1113-1122 http://identifiers.org/uniprot/Q9FE01 denotes cytosolic
T98757 1113-1122 http://identifiers.org/uniprot/Q10N21 denotes cytosolic
T13113 1113-1122 http://identifiers.org/uniprot/Q0DRV6 denotes cytosolic
T51666 1113-1122 http://identifiers.org/uniprot/P48494 denotes cytosolic
T16552 1113-1122 http://identifiers.org/uniprot/P28757 denotes cytosolic
T69588 1113-1122 http://identifiers.org/uniprot/B8AIH2 denotes cytosolic
T41999 1113-1122 http://identifiers.org/uniprot/A2YG06 denotes cytosolic
T76621 1711-1720 http://identifiers.org/uniprot/Q9FE01 denotes cytosolic
T11656 1711-1720 http://identifiers.org/uniprot/Q10N21 denotes cytosolic
T27688 1711-1720 http://identifiers.org/uniprot/Q0DRV6 denotes cytosolic
T18293 1711-1720 http://identifiers.org/uniprot/P48494 denotes cytosolic
T64084 1711-1720 http://identifiers.org/uniprot/P28757 denotes cytosolic
T86801 1711-1720 http://identifiers.org/uniprot/B8AIH2 denotes cytosolic
T25690 1711-1720 http://identifiers.org/uniprot/A2YG06 denotes cytosolic
M_0 775-787 hunflair:NA:Species denotes Oryza sativa
M_1 766-772 hunflair:NA:Gene denotes AtCPKs
M_2 954-960 hunflair:NA:Gene denotes AtCPKs
M_3 789-795 hunflair:NA:Gene denotes OsCPKs
M_4 984-990 hunflair:NA:Gene denotes OsCPKs
M_5 1613-1630 hunflair:NA:Gene denotes MdCPK gene family
M_6 107-124 hunflair:NA:Species denotes Malus x domestica
M_7 612-629 hunflair:NA:Species denotes Malus x domestica
M_8 1634-1651 hunflair:NA:Species denotes Malus x domestica
M_9 744-764 hunflair:NA:Species denotes Arabidopsis thaliana
M_10 371-401 hunflair:NA:Gene denotes Ca2+-dependent protein kinases
M_11 820-826 hunflair:NA:Gene denotes PtCPKs
M_12 965-971 hunflair:NA:Gene denotes PtCPKs
M_13 1323-1330 hunflair:NA:Chemical denotes Calcium
M_14 924-930 hunflair:NA:Gene denotes MdCPKs
M_15 1494-1500 hunflair:NA:Gene denotes MdCPKs
M_16 1799-1805 hunflair:NA:Gene denotes MdCPKs
M_17 2047-2053 hunflair:NA:Gene denotes MdCPKs
M_18 215-222 hunflair:NA:Chemical denotes calcium
M_19 1123-1130 hunflair:NA:Chemical denotes calcium
M_20 1721-1728 hunflair:NA:Chemical denotes calcium
M_21 1922-1934 hunflair:NA:Species denotes E. amylovora
M_22 479-497 hunflair:NA:Disease denotes pathogen infection
M_23 1541-1559 hunflair:NA:Disease denotes pathogen infection
M_24 1744-1762 hunflair:NA:Disease denotes pathogen infection
M_25 720-730 hunflair:NA:Gene denotes Malus CPKs
M_26 842-848 hunflair:NA:Gene denotes ZmCPKs
M_27 995-1001 hunflair:NA:Gene denotes ZmCPKs
M_28 798-818 hunflair:NA:Species denotes Populous trichocarpa
M_29 630-633 hunflair:NA:Gene denotes CPK
M_30 672-675 hunflair:NA:Gene denotes CPK
M_31 27-31 hunflair:NA:Gene denotes CPKs
M_32 403-407 hunflair:NA:Gene denotes CPKs
M_33 726-730 hunflair:NA:Gene denotes CPKs
M_34 736-740 hunflair:NA:Gene denotes CPKs
M_35 90-95 hunflair:NA:Species denotes apple
M_36 1225-1230 hunflair:NA:Species denotes apple
M_37 2115-2120 hunflair:NA:Species denotes apple
M_38 832-840 hunflair:NA:Species denotes Zea mays
M_39 154-171 hunflair:NA:Species denotes Erwinia amylovora
M_40 1278-1295 hunflair:NA:Species denotes Erwinia amylovora
M_41 46-49 hunflair:NA:Chemical denotes Ca2
M_42 224-227 hunflair:NA:Chemical denotes Ca2
M_43 333-336 hunflair:NA:Chemical denotes Ca2
M_44 371-374 hunflair:NA:Chemical denotes Ca2
M_45 461-464 hunflair:NA:Chemical denotes Ca2
M_46 1133-1136 hunflair:NA:Chemical denotes Ca2
M_47 1361-1364 hunflair:NA:Chemical denotes Ca2
M_48 1828-1831 hunflair:NA:Chemical denotes Ca2
M_49 1210-1224 hunflair:NA:Species denotes M. x domestica
M_50 1882-1896 hunflair:NA:Species denotes M. x domestica

Allie

Id Subject Object Predicate Lexical cue
SS1_24192013_6_0 612-633 expanded denotes Malus x domestica CPK
SS2_24192013_6_0 635-640 abbr denotes MdCPK
AE1_24192013_6_0 SS1_24192013_6_0 SS2_24192013_6_0 abbreviatedTo Malus x domestica CPK,MdCPK

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-196 Sentence denotes Differential expression of CPKs and cytosolic Ca2+ variation in resistant and susceptible apple cultivars (Malus x domestica) in response to the pathogen Erwinia amylovora and mechanical wounding.
T2 197-208 Sentence denotes BACKGROUND:
T3 209-332 Sentence denotes Plant calcium (Ca2+) signals are involved in a wide array of intracellular signalling pathways following pathogen invasion.
T4 333-498 Sentence denotes Ca2+-binding sensory proteins such as Ca2+-dependent protein kinases (CPKs) have been predicted to mediate signalling following Ca2+ influx after pathogen infection.
T5 499-553 Sentence denotes However, to date this prediction has remained elusive.
T6 554-562 Sentence denotes RESULTS:
T7 563-682 Sentence denotes We conducted a genome-wide identification of the Malus x domestica CPK (MdCPK) gene family and identified 30 CPK genes.
T8 683-881 Sentence denotes Comparative phylogenetic analysis of Malus CPKs with CPKs of Arabidopsis thaliana (AtCPKs), Oryza sativa (OsCPKs), Populous trichocarpa (PtCPKs) and Zea mays (ZmCPKs) revealed four different groups.
T9 882-1042 Sentence denotes From the phylogenetic tree, we found that MdCPKs are closely related to AtCPKs and PtCPKs rather than OsCPKs and ZmCPKs, indicating their dicot-specific origin.
T10 1043-1322 Sentence denotes Furthermore, comparative quantitative real time PCR and intracellular cytosolic calcium ([Ca2+]cyt) analysis were carried out on fire blight resistant and susceptible M. x domestica apple cultivars following infection with a pathogen (Erwinia amylovora) and/or mechanical damage.
T11 1323-1440 Sentence denotes Calcium analysis showed an increased [Ca2+]cyt over time in resistant cultivars as compared to susceptible cultivars.
T12 1441-1560 Sentence denotes Gene expression studies showed that 11 out of the 30 MdCPKs were differentially expressed following pathogen infection.
T13 1561-1573 Sentence denotes CONCLUSIONS:
T14 1574-1763 Sentence denotes We studied the genome-wide analysis of MdCPK gene family in Malus x domestica and analyzed their differential gene expression along with cytosolic calcium variation upon pathogen infection.
T15 1764-1959 Sentence denotes There was a striking difference in MdCPKs gene expressions and [Ca2+]cyt variations between resistant and susceptible M. x domestica cultivars in response to E. amylovora and mechanical wounding.
T16 1960-2131 Sentence denotes Our genomic and bioinformatic analysis provided an important insight about the role of MdCPKs in modulating defence responses in susceptible and resistant apple cultivars.
T17 2132-2272 Sentence denotes It also provided further information on early signalling and downstream signalling cascades in response to pathogenic and mechanical stress.