PubMed:23999440
Annnotations
sentences
{"project":"sentences","denotations":[{"id":"TextSentencer_T1","span":{"begin":0,"end":83},"obj":"Sentence"},{"id":"TextSentencer_T2","span":{"begin":84,"end":360},"obj":"Sentence"},{"id":"TextSentencer_T3","span":{"begin":361,"end":524},"obj":"Sentence"},{"id":"TextSentencer_T4","span":{"begin":525,"end":771},"obj":"Sentence"},{"id":"TextSentencer_T5","span":{"begin":772,"end":915},"obj":"Sentence"},{"id":"T1","span":{"begin":0,"end":83},"obj":"Sentence"},{"id":"T2","span":{"begin":84,"end":360},"obj":"Sentence"},{"id":"T3","span":{"begin":361,"end":524},"obj":"Sentence"},{"id":"T4","span":{"begin":525,"end":771},"obj":"Sentence"},{"id":"T5","span":{"begin":772,"end":915},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"HIF-1 mediates metabolic responses to intratumoral hypoxia and oncogenic mutations.\nHypoxia occurs frequently in human cancers and induces adaptive changes in cell metabolism that include a switch from oxidative phosphorylation to glycolysis, increased glycogen synthesis, and a switch from glucose to glutamine as the major substrate for fatty acid synthesis. This broad metabolic reprogramming is coordinated at the transcriptional level by HIF-1, which functions as a master regulator to balance oxygen supply and demand. HIF-1 is also activated in cancer cells by tumor suppressor (e.g., VHL) loss of function and oncogene gain of function (leading to PI3K/AKT/mTOR activity) and mediates metabolic alterations that drive cancer progression and resistance to therapy. Inhibitors of HIF-1 or metabolic enzymes may impair the metabolic flexibility of cancer cells and make them more sensitive to anticancer drugs."}
DisGeNET
{"project":"DisGeNET","denotations":[{"id":"T0","span":{"begin":661,"end":664},"obj":"gene:207"},{"id":"T1","span":{"begin":726,"end":744},"obj":"disease:C0178874"},{"id":"T2","span":{"begin":656,"end":660},"obj":"gene:5291"},{"id":"T3","span":{"begin":726,"end":744},"obj":"disease:C0178874"},{"id":"T4","span":{"begin":656,"end":660},"obj":"gene:5290"},{"id":"T5","span":{"begin":726,"end":744},"obj":"disease:C0178874"},{"id":"T6","span":{"begin":656,"end":660},"obj":"gene:5293"},{"id":"T7","span":{"begin":726,"end":744},"obj":"disease:C0178874"},{"id":"T8","span":{"begin":525,"end":530},"obj":"gene:3091"},{"id":"T9","span":{"begin":552,"end":558},"obj":"disease:C0006826"},{"id":"T10","span":{"begin":525,"end":530},"obj":"gene:3091"},{"id":"T11","span":{"begin":552,"end":558},"obj":"disease:C1306459"},{"id":"T12","span":{"begin":525,"end":530},"obj":"gene:29072"},{"id":"T13","span":{"begin":552,"end":558},"obj":"disease:C0006826"},{"id":"T14","span":{"begin":525,"end":530},"obj":"gene:29072"},{"id":"T15","span":{"begin":552,"end":558},"obj":"disease:C1306459"},{"id":"T16","span":{"begin":656,"end":660},"obj":"gene:5294"},{"id":"T17","span":{"begin":726,"end":744},"obj":"disease:C0178874"},{"id":"T18","span":{"begin":525,"end":530},"obj":"gene:29072"},{"id":"T19","span":{"begin":726,"end":744},"obj":"disease:C0178874"},{"id":"T20","span":{"begin":592,"end":595},"obj":"gene:7428"},{"id":"T21","span":{"begin":726,"end":744},"obj":"disease:C0178874"},{"id":"T22","span":{"begin":525,"end":530},"obj":"gene:3091"},{"id":"T23","span":{"begin":726,"end":744},"obj":"disease:C0178874"},{"id":"T24","span":{"begin":786,"end":791},"obj":"gene:29072"},{"id":"T25","span":{"begin":853,"end":859},"obj":"disease:C1306459"},{"id":"T26","span":{"begin":786,"end":791},"obj":"gene:29072"},{"id":"T27","span":{"begin":853,"end":859},"obj":"disease:C0006826"},{"id":"T28","span":{"begin":786,"end":791},"obj":"gene:3091"},{"id":"T29","span":{"begin":853,"end":859},"obj":"disease:C1306459"},{"id":"T30","span":{"begin":786,"end":791},"obj":"gene:3091"},{"id":"T31","span":{"begin":853,"end":859},"obj":"disease:C0006826"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T0","obj":"T1"},{"id":"R2","pred":"associated_with","subj":"T2","obj":"T3"},{"id":"R3","pred":"associated_with","subj":"T4","obj":"T5"},{"id":"R4","pred":"associated_with","subj":"T6","obj":"T7"},{"id":"R5","pred":"associated_with","subj":"T8","obj":"T9"},{"id":"R6","pred":"associated_with","subj":"T10","obj":"T11"},{"id":"R7","pred":"associated_with","subj":"T12","obj":"T13"},{"id":"R8","pred":"associated_with","subj":"T14","obj":"T15"},{"id":"R9","pred":"associated_with","subj":"T16","obj":"T17"},{"id":"R10","pred":"associated_with","subj":"T18","obj":"T19"},{"id":"R11","pred":"associated_with","subj":"T20","obj":"T21"},{"id":"R12","pred":"associated_with","subj":"T22","obj":"T23"},{"id":"R13","pred":"associated_with","subj":"T24","obj":"T25"},{"id":"R14","pred":"associated_with","subj":"T26","obj":"T27"},{"id":"R15","pred":"associated_with","subj":"T28","obj":"T29"},{"id":"R16","pred":"associated_with","subj":"T30","obj":"T31"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"text":"HIF-1 mediates metabolic responses to intratumoral hypoxia and oncogenic mutations.\nHypoxia occurs frequently in human cancers and induces adaptive changes in cell metabolism that include a switch from oxidative phosphorylation to glycolysis, increased glycogen synthesis, and a switch from glucose to glutamine as the major substrate for fatty acid synthesis. This broad metabolic reprogramming is coordinated at the transcriptional level by HIF-1, which functions as a master regulator to balance oxygen supply and demand. HIF-1 is also activated in cancer cells by tumor suppressor (e.g., VHL) loss of function and oncogene gain of function (leading to PI3K/AKT/mTOR activity) and mediates metabolic alterations that drive cancer progression and resistance to therapy. Inhibitors of HIF-1 or metabolic enzymes may impair the metabolic flexibility of cancer cells and make them more sensitive to anticancer drugs."}
PubmedHPO
{"project":"PubmedHPO","denotations":[{"id":"T1","span":{"begin":119,"end":126},"obj":"HP_0002664"},{"id":"T2","span":{"begin":552,"end":558},"obj":"HP_0002664"},{"id":"T3","span":{"begin":568,"end":573},"obj":"HP_0002664"},{"id":"T4","span":{"begin":726,"end":732},"obj":"HP_0002664"},{"id":"T5","span":{"begin":853,"end":859},"obj":"HP_0002664"}],"text":"HIF-1 mediates metabolic responses to intratumoral hypoxia and oncogenic mutations.\nHypoxia occurs frequently in human cancers and induces adaptive changes in cell metabolism that include a switch from oxidative phosphorylation to glycolysis, increased glycogen synthesis, and a switch from glucose to glutamine as the major substrate for fatty acid synthesis. This broad metabolic reprogramming is coordinated at the transcriptional level by HIF-1, which functions as a master regulator to balance oxygen supply and demand. HIF-1 is also activated in cancer cells by tumor suppressor (e.g., VHL) loss of function and oncogene gain of function (leading to PI3K/AKT/mTOR activity) and mediates metabolic alterations that drive cancer progression and resistance to therapy. Inhibitors of HIF-1 or metabolic enzymes may impair the metabolic flexibility of cancer cells and make them more sensitive to anticancer drugs."}
DisGeNET5_gene_disease
{"project":"DisGeNET5_gene_disease","denotations":[{"id":"23999440-3#0#5#gene3091","span":{"begin":525,"end":530},"obj":"gene3091"},{"id":"23999440-3#0#5#gene29072","span":{"begin":525,"end":530},"obj":"gene29072"},{"id":"23999440-3#131#135#gene5290","span":{"begin":656,"end":660},"obj":"gene5290"},{"id":"23999440-3#131#135#gene5291","span":{"begin":656,"end":660},"obj":"gene5291"},{"id":"23999440-3#131#135#gene5293","span":{"begin":656,"end":660},"obj":"gene5293"},{"id":"23999440-3#131#135#gene5294","span":{"begin":656,"end":660},"obj":"gene5294"},{"id":"23999440-3#67#70#gene7428","span":{"begin":592,"end":595},"obj":"gene7428"},{"id":"23999440-3#136#139#gene207","span":{"begin":661,"end":664},"obj":"gene207"},{"id":"23999440-3#201#219#diseaseC0178874","span":{"begin":726,"end":744},"obj":"diseaseC0178874"}],"relations":[{"id":"0#5#gene3091201#219#diseaseC0178874","pred":"associated_with","subj":"23999440-3#0#5#gene3091","obj":"23999440-3#201#219#diseaseC0178874"},{"id":"0#5#gene29072201#219#diseaseC0178874","pred":"associated_with","subj":"23999440-3#0#5#gene29072","obj":"23999440-3#201#219#diseaseC0178874"},{"id":"131#135#gene5290201#219#diseaseC0178874","pred":"associated_with","subj":"23999440-3#131#135#gene5290","obj":"23999440-3#201#219#diseaseC0178874"},{"id":"131#135#gene5291201#219#diseaseC0178874","pred":"associated_with","subj":"23999440-3#131#135#gene5291","obj":"23999440-3#201#219#diseaseC0178874"},{"id":"131#135#gene5293201#219#diseaseC0178874","pred":"associated_with","subj":"23999440-3#131#135#gene5293","obj":"23999440-3#201#219#diseaseC0178874"},{"id":"131#135#gene5294201#219#diseaseC0178874","pred":"associated_with","subj":"23999440-3#131#135#gene5294","obj":"23999440-3#201#219#diseaseC0178874"},{"id":"67#70#gene7428201#219#diseaseC0178874","pred":"associated_with","subj":"23999440-3#67#70#gene7428","obj":"23999440-3#201#219#diseaseC0178874"},{"id":"136#139#gene207201#219#diseaseC0178874","pred":"associated_with","subj":"23999440-3#136#139#gene207","obj":"23999440-3#201#219#diseaseC0178874"}],"text":"HIF-1 mediates metabolic responses to intratumoral hypoxia and oncogenic mutations.\nHypoxia occurs frequently in human cancers and induces adaptive changes in cell metabolism that include a switch from oxidative phosphorylation to glycolysis, increased glycogen synthesis, and a switch from glucose to glutamine as the major substrate for fatty acid synthesis. This broad metabolic reprogramming is coordinated at the transcriptional level by HIF-1, which functions as a master regulator to balance oxygen supply and demand. HIF-1 is also activated in cancer cells by tumor suppressor (e.g., VHL) loss of function and oncogene gain of function (leading to PI3K/AKT/mTOR activity) and mediates metabolic alterations that drive cancer progression and resistance to therapy. Inhibitors of HIF-1 or metabolic enzymes may impair the metabolic flexibility of cancer cells and make them more sensitive to anticancer drugs."}
DisGeNet-2017-sample
{"project":"DisGeNet-2017-sample","denotations":[{"id":"T2921","span":{"begin":525,"end":530},"obj":"gene:3091"},{"id":"T2922","span":{"begin":726,"end":744},"obj":"disease:C0178874"},{"id":"T2923","span":{"begin":656,"end":660},"obj":"gene:5290"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T2921","obj":"T2922"},{"id":"R2","pred":"associated_with","subj":"T2921","obj":"T2922"},{"id":"R3","pred":"associated_with","subj":"T2923","obj":"T2922"},{"id":"R4","pred":"associated_with","subj":"T2923","obj":"T2922"},{"id":"R5","pred":"associated_with","subj":"T2923","obj":"T2922"},{"id":"R6","pred":"associated_with","subj":"T2923","obj":"T2922"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"text":"HIF-1 mediates metabolic responses to intratumoral hypoxia and oncogenic mutations.\nHypoxia occurs frequently in human cancers and induces adaptive changes in cell metabolism that include a switch from oxidative phosphorylation to glycolysis, increased glycogen synthesis, and a switch from glucose to glutamine as the major substrate for fatty acid synthesis. This broad metabolic reprogramming is coordinated at the transcriptional level by HIF-1, which functions as a master regulator to balance oxygen supply and demand. HIF-1 is also activated in cancer cells by tumor suppressor (e.g., VHL) loss of function and oncogene gain of function (leading to PI3K/AKT/mTOR activity) and mediates metabolic alterations that drive cancer progression and resistance to therapy. Inhibitors of HIF-1 or metabolic enzymes may impair the metabolic flexibility of cancer cells and make them more sensitive to anticancer drugs."}