PubMed:23791840 / 0-559
Annnotations
LitCoin-entities-OrganismTaxon-PD
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| T1 | 41-45 | OrganismTaxon | denotes | mice | NCBItxid:10095|NCBItxid:10088 |
LitCoin-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-135 | Sentence | denotes | Superoxide dismutase 1 overexpression in mice abolishes maternal diabetes-induced endoplasmic reticulum stress in diabetic embryopathy. |
| T2 | 136-146 | Sentence | denotes | OBJECTIVE: |
| T3 | 147-256 | Sentence | denotes | Both oxidative stress and endoplasmic reticulum stress (ER stress) are causal events in diabetic embryopathy. |
| T4 | 257-309 | Sentence | denotes | We tested whether oxidative stress causes ER stress. |
| T5 | 310-323 | Sentence | denotes | STUDY DESIGN: |
LitCoin-entities
| Id | Subject | Object | Predicate | Lexical cue | db_id |
|---|---|---|---|---|---|
| 9235 | 0-22 | GeneOrGeneProduct | denotes | Superoxide dismutase 1 | NCBIGene:20655 |
| 9236 | 41-45 | OrganismTaxon | denotes | mice | NCBITaxon:10090 |
| 9237 | 56-73 | DiseaseOrPhenotypicFeature | denotes | maternal diabetes | MESH:D016640 |
| 9238 | 114-122 | DiseaseOrPhenotypicFeature | denotes | diabetic | MESH:D003920 |
| 9239 | 123-134 | DiseaseOrPhenotypicFeature | denotes | embryopathy | MESH:D005315 |
| 9240 | 235-243 | DiseaseOrPhenotypicFeature | denotes | diabetic | MESH:D003920 |
| 9241 | 244-255 | DiseaseOrPhenotypicFeature | denotes | embryopathy | MESH:D005315 |
| 9242 | 343-365 | GeneOrGeneProduct | denotes | superoxide dismutase 1 | NCBIGene:20655 |
| 9243 | 367-371 | GeneOrGeneProduct | denotes | SOD1 | NCBIGene:20655 |
| 9244 | 438-442 | GeneOrGeneProduct | denotes | SOD1 | NCBIGene:20655 |
| 9245 | 463-471 | DiseaseOrPhenotypicFeature | denotes | diabetic | MESH:D003920 |
| 9246 | 487-491 | GeneOrGeneProduct | denotes | SOD1 | NCBIGene:20655 |
LitCoin_Mondo
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 114-134 | DiseaseOrPhenotypicFeature | denotes | diabetic embryopathy | 0016018 |
| T2 | 235-255 | DiseaseOrPhenotypicFeature | denotes | diabetic embryopathy | 0016018 |
LitCoin-GeneOrGeneProduct-v0
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-22 | GeneOrGeneProduct | denotes | Superoxide dismutase 1 |
| T2 | 41-45 | GeneOrGeneProduct | denotes | mice |
| T3 | 65-73 | GeneOrGeneProduct | denotes | diabetes |
| T4 | 74-81 | GeneOrGeneProduct | denotes | induced |
| T5 | 82-103 | GeneOrGeneProduct | denotes | endoplasmic reticulum |
| T6 | 114-122 | GeneOrGeneProduct | denotes | diabetic |
| T7 | 173-194 | GeneOrGeneProduct | denotes | endoplasmic reticulum |
| T8 | 203-205 | GeneOrGeneProduct | denotes | ER |
| T9 | 235-243 | GeneOrGeneProduct | denotes | diabetic |
| T10 | 260-266 | GeneOrGeneProduct | denotes | tested |
| T11 | 299-301 | GeneOrGeneProduct | denotes | ER |
| T12 | 343-365 | GeneOrGeneProduct | denotes | superoxide dismutase 1 |
| T13 | 367-371 | GeneOrGeneProduct | denotes | SOD1 |
| T14 | 438-442 | GeneOrGeneProduct | denotes | SOD1 |
| T15 | 454-458 | GeneOrGeneProduct | denotes | male |
| T16 | 463-471 | GeneOrGeneProduct | denotes | diabetic |
| T17 | 487-491 | GeneOrGeneProduct | denotes | SOD1 |
| T18 | 503-507 | GeneOrGeneProduct | denotes | male |
| T19 | 526-528 | GeneOrGeneProduct | denotes | ER |
| T20 | 545-550 | GeneOrGeneProduct | denotes | C/EBP |
LitCoin-GeneOrGeneProduct-v2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-22 | GeneOrGeneProduct | denotes | Superoxide dismutase 1 |
| T2 | 65-73 | GeneOrGeneProduct | denotes | diabetes |
| T3 | 82-103 | GeneOrGeneProduct | denotes | endoplasmic reticulum |
| T4 | 173-194 | GeneOrGeneProduct | denotes | endoplasmic reticulum |
| T5 | 343-365 | GeneOrGeneProduct | denotes | superoxide dismutase 1 |
| T6 | 367-371 | GeneOrGeneProduct | denotes | SOD1 |
| T7 | 438-442 | GeneOrGeneProduct | denotes | SOD1 |
| T8 | 487-491 | GeneOrGeneProduct | denotes | SOD1 |
| T9 | 545-550 | GeneOrGeneProduct | denotes | C/EBP |
LitCoin-Disease-MeSH
| Id | Subject | Object | Predicate | Lexical cue | originalLabel |
|---|---|---|---|---|---|
| T1 | 65-73 | DiseaseOrPhenotypicFeature | denotes | diabetes | DISEASE |
| T2 | 114-122 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE |
| T3 | 123-134 | DiseaseOrPhenotypicFeature | denotes | embryopathy | D005315 |
| T4 | 235-243 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE |
| T5 | 244-255 | DiseaseOrPhenotypicFeature | denotes | embryopathy | D005315 |
| T6 | 463-471 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE |
LitCoin-GeneOrGeneProduct-v3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-22 | GeneOrGeneProduct | denotes | Superoxide dismutase 1 |
| T2 | 343-365 | GeneOrGeneProduct | denotes | superoxide dismutase 1 |
| T3 | 367-371 | GeneOrGeneProduct | denotes | SOD1 |
| T4 | 438-442 | GeneOrGeneProduct | denotes | SOD1 |
| T5 | 487-491 | GeneOrGeneProduct | denotes | SOD1 |
| T6 | 545-550 | GeneOrGeneProduct | denotes | C/EBP |
LitCoin_Mondo_095
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 65-73 | DiseaseOrPhenotypicFeature | denotes | diabetes | 0005015 |
| T2 | 114-134 | DiseaseOrPhenotypicFeature | denotes | diabetic embryopathy | 0016018 |
| T3 | 235-255 | DiseaseOrPhenotypicFeature | denotes | diabetic embryopathy | 0016018 |
LitCoin-MeSH-Disease-2
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 56-73 | DiseaseOrPhenotypicFeature | denotes | maternal diabetes | DISEASE |
| T2 | 114-122 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE |
| T3 | 123-134 | DiseaseOrPhenotypicFeature | denotes | embryopathy | D005315 |
| T4 | 235-243 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE |
| T5 | 244-255 | DiseaseOrPhenotypicFeature | denotes | embryopathy | D005315 |
| T6 | 463-471 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE |
LitCoin-MONDO_bioort2019
| Id | Subject | Object | Predicate | Lexical cue | #label |
|---|---|---|---|---|---|
| T1 | 56-73 | DiseaseOrPhenotypicFeature | denotes | maternal diabetes | DISEASE |
| T2 | 114-122 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE |
| T3 | 123-134 | DiseaseOrPhenotypicFeature | denotes | embryopathy | D005315 |
| T4 | 235-243 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE |
| T5 | 244-255 | DiseaseOrPhenotypicFeature | denotes | embryopathy | D005315 |
| T6 | 463-471 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE |
LitCoin-Chemical-MeSH-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | ID: |
|---|---|---|---|---|---|
| T1 | 0-22 | ChemicalEntity | denotes | Superoxide dismutase 1 | D000072105 |
| T2 | 343-365 | ChemicalEntity | denotes | superoxide dismutase 1 | D000072105 |
| T3 | 367-371 | ChemicalEntity | denotes | SOD1 | D000072105 |
| T4 | 438-442 | ChemicalEntity | denotes | SOD1 | D000072105 |
| T5 | 487-491 | ChemicalEntity | denotes | SOD1 | D000072105 |
LitCoin-NCBITaxon-2
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 41-45 | OrganismTaxon | denotes | mice |
LitCoin-training-merged
| Id | Subject | Object | Predicate | Lexical cue | #label | ID: |
|---|---|---|---|---|---|---|
| T5 | 487-491 | ChemicalEntity | denotes | SOD1 | D000072105 | |
| T4 | 438-442 | ChemicalEntity | denotes | SOD1 | D000072105 | |
| T3 | 367-371 | ChemicalEntity | denotes | SOD1 | D000072105 | |
| T2 | 343-365 | ChemicalEntity | denotes | superoxide dismutase 1 | D000072105 | |
| T1 | 0-22 | ChemicalEntity | denotes | Superoxide dismutase 1 | D000072105 | |
| T67309 | 545-550 | GeneOrGeneProduct | denotes | C/EBP | ||
| T99707 | 487-491 | GeneOrGeneProduct | denotes | SOD1 | ||
| T37806 | 438-442 | GeneOrGeneProduct | denotes | SOD1 | ||
| T81519 | 367-371 | GeneOrGeneProduct | denotes | SOD1 | ||
| T38298 | 343-365 | GeneOrGeneProduct | denotes | superoxide dismutase 1 | ||
| T21114 | 0-22 | GeneOrGeneProduct | denotes | Superoxide dismutase 1 | ||
| T85146 | 463-471 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE | |
| T34699 | 244-255 | DiseaseOrPhenotypicFeature | denotes | embryopathy | D005315 | |
| T48419 | 235-243 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE | |
| T59342 | 123-134 | DiseaseOrPhenotypicFeature | denotes | embryopathy | D005315 | |
| T97727 | 114-122 | DiseaseOrPhenotypicFeature | denotes | diabetic | DISEASE | |
| T81558 | 56-73 | DiseaseOrPhenotypicFeature | denotes | maternal diabetes | DISEASE | |
| T57592 | 41-45 | OrganismTaxon | denotes | mice |
Allie
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| SS1_23791840_2_0 | 173-201 | expanded | denotes | endoplasmic reticulum stress |
| SS2_23791840_2_0 | 203-212 | abbr | denotes | ER stress |
| SS1_23791840_5_0 | 324-333 | expanded | denotes | Wild-type |
| SS2_23791840_5_0 | 335-337 | abbr | denotes | WT |
| SS1_23791840_5_1 | 343-365 | expanded | denotes | superoxide dismutase 1 |
| SS2_23791840_5_1 | 367-371 | abbr | denotes | SOD1 |
| AE1_23791840_2_0 | SS1_23791840_2_0 | SS2_23791840_2_0 | abbreviatedTo | endoplasmic reticulum stress,ER stress |
| AE1_23791840_5_0 | SS1_23791840_5_0 | SS2_23791840_5_0 | abbreviatedTo | Wild-type,WT |
| AE1_23791840_5_1 | SS1_23791840_5_1 | SS2_23791840_5_1 | abbreviatedTo | superoxide dismutase 1,SOD1 |