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PubMed:23639970 JSONTXT

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OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 30-39 http://identifiers.org/oryzabase.gene/665 denotes semidwarf
T2 84-87 http://identifiers.org/oryzabase.gene/470 denotes sd1
T3 179-188 http://identifiers.org/oryzabase.gene/665 denotes semidwarf
T4 246-249 http://identifiers.org/oryzabase.gene/470 denotes sd1
T5 392-395 http://identifiers.org/oryzabase.gene/470 denotes sd1
T6 464-466 http://identifiers.org/oryzabase.gene/870 denotes bp
T7 504-512 http://identifiers.org/oryzabase.gene/470 denotes GA20ox-2
T6234 84-87 http://identifiers.org/ricegap/LOC_Os01g66100 denotes sd1
T78836 246-249 http://identifiers.org/ricegap/LOC_Os01g66100 denotes sd1
T29779 392-395 http://identifiers.org/ricegap/LOC_Os01g66100 denotes sd1
T40422 504-512 http://identifiers.org/ricegap/LOC_Os01g66100 denotes GA20ox-2
T59066 84-87 http://identifiers.org/rapdb.locus/Os01g0883800 denotes sd1
T36755 246-249 http://identifiers.org/rapdb.locus/Os01g0883800 denotes sd1
T71540 392-395 http://identifiers.org/rapdb.locus/Os01g0883800 denotes sd1
T12198 504-512 http://identifiers.org/rapdb.locus/Os01g0883800 denotes GA20ox-2
T56058 84-87 http://identifiers.org/uniprot/Q0JH50 denotes sd1
T82446 84-87 http://identifiers.org/uniprot/B6F2D9 denotes sd1
T72400 246-249 http://identifiers.org/uniprot/Q0JH50 denotes sd1
T91830 246-249 http://identifiers.org/uniprot/B6F2D9 denotes sd1
T97847 392-395 http://identifiers.org/uniprot/Q0JH50 denotes sd1
T42660 392-395 http://identifiers.org/uniprot/B6F2D9 denotes sd1
T50648 504-512 http://identifiers.org/uniprot/Q0JH50 denotes GA20ox-2
T8 504-512 http://identifiers.org/uniprot/B6F2D9 denotes GA20ox-2
M_0 933-936 hunflair:NA:Chemical denotes FAM
M_1 67-92 hunflair:NA:Gene denotes Green Revolution sd1 gene
M_2 229-254 hunflair:NA:Gene denotes Green Revolution sd1 gene
M_3 146-175 hunflair:NA:Species denotes rice cultivar Hikarishinseiki
M_4 528-544 hunflair:NA:Gene denotes Jukkoku_GA20ox-2
M_5 671-687 hunflair:NA:Gene denotes Jukkoku_GA20ox-2
M_6 857-873 hunflair:NA:Gene denotes Jukkoku_GA20ox-2
M_7 1001-1017 hunflair:NA:Gene denotes Jukkoku_GA20ox-2
M_8 1026-1042 hunflair:NA:Gene denotes Jukkoku_GA20ox-2
M_9 1151-1167 hunflair:NA:Gene denotes Jukkoku_GA20ox-2
M_10 40-44 hunflair:NA:Species denotes rice
M_11 146-150 hunflair:NA:Species denotes rice
M_12 431-453 hunflair:NA:Gene denotes gibberellin 20-oxidase
M_13 84-87 hunflair:NA:Gene denotes sd1
M_14 246-249 hunflair:NA:Gene denotes sd1
M_15 392-395 hunflair:NA:Gene denotes sd1

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 462-463 http://identifiers.org/oryzabase.gene/11216 denotes 1
T2 488-489 http://identifiers.org/oryzabase.gene/11216 denotes 1

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 84-87 http://identifiers.org/oryzabase.gene/470 denotes sd1
T2 246-249 http://identifiers.org/oryzabase.gene/470 denotes sd1
T3 392-395 http://identifiers.org/oryzabase.gene/470 denotes sd1
T4 504-512 http://identifiers.org/oryzabase.gene/470 denotes GA20ox-2
T24188 84-87 http://identifiers.org/rapdb.locus/Os01g0883800 denotes sd1
T48676 246-249 http://identifiers.org/rapdb.locus/Os01g0883800 denotes sd1
T53819 392-395 http://identifiers.org/rapdb.locus/Os01g0883800 denotes sd1
T67039 504-512 http://identifiers.org/rapdb.locus/Os01g0883800 denotes GA20ox-2

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 933-936 hunflair:NA:Chemical denotes FAM
M_1 67-92 hunflair:NA:Gene denotes Green Revolution sd1 gene
M_2 229-254 hunflair:NA:Gene denotes Green Revolution sd1 gene
M_3 146-175 hunflair:NA:Species denotes rice cultivar Hikarishinseiki
M_4 528-544 hunflair:NA:Gene denotes Jukkoku_GA20ox-2
M_5 671-687 hunflair:NA:Gene denotes Jukkoku_GA20ox-2
M_6 857-873 hunflair:NA:Gene denotes Jukkoku_GA20ox-2
M_7 1001-1017 hunflair:NA:Gene denotes Jukkoku_GA20ox-2
M_8 1026-1042 hunflair:NA:Gene denotes Jukkoku_GA20ox-2
M_9 1151-1167 hunflair:NA:Gene denotes Jukkoku_GA20ox-2
M_10 40-44 hunflair:NA:Species denotes rice
M_11 146-150 hunflair:NA:Species denotes rice
M_12 431-453 hunflair:NA:Gene denotes gibberellin 20-oxidase
M_13 84-87 hunflair:NA:Gene denotes sd1
M_14 246-249 hunflair:NA:Gene denotes sd1
M_15 392-395 hunflair:NA:Gene denotes sd1

Allie

Id Subject Object Predicate Lexical cue
SS1_23639970_3_0 550-572 expanded denotes allele-specific primer
SS2_23639970_3_0 574-577 abbr denotes ASP
AE1_23639970_3_0 SS1_23639970_3_0 SS2_23639970_3_0 abbreviatedTo allele-specific primer,ASP

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-141 Sentence denotes Identification of an isogenic semidwarf rice cultivar carrying the Green Revolution sd1 gene by multiplex codominant ASP-PCR and SSR markers.
T2 142-527 Sentence denotes The rice cultivar Hikarishinseiki, a semidwarf isogenotype of Koshihikari carrying the Green Revolution sd1 gene, is increasingly grown in both Japan and the United States. Here, we report DNA diagnosis for Hikarishinseiki targeting its Jukkoku-type sd1 locus, which codes for a defective gibberellin 20-oxidase, with a 1 bp substitution in exon 1 (Jukkoku-type GA20ox-2 mutant allele:
T3 528-546 Sentence denotes Jukkoku_GA20ox-2).
T4 547-688 Sentence denotes An allele-specific primer (ASP)-polymerase chain reaction (PCR) with primers SD1F3 and SD1JR gave a PCR product specific to Jukkoku_GA20ox-2.
T5 689-874 Sentence denotes In addition, ASP-PCR with primers SD1F3 and SD1NRM (which contains a mismatch at the third nucleotide from the 3'-terminus of SD1NR) gave a PCR product specific to non-Jukkoku_GA20ox-2.
T6 875-1063 Sentence denotes Multiplex ASP-PCR using SD1F3, VIC dye-labeled SD1JR, and FAM dye-labeled SD1NRM enabled simultaneous codominant detection of Jukkoku_GA20ox-2 and non-Jukkoku_GA20ox-2 among 188 cultivars.
T7 1064-1168 Sentence denotes Also, Hikarishinseiki is identifiable by RM253 polymorphism from 11 cultivars carrying Jukkoku_GA20ox-2.
T8 1169-1256 Sentence denotes Taken together, our results establish a methodology for distinguishing Hikarishinseiki.