PubMed:23418199 / 542-769 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/23418199","sourcedb":"PubMed","sourceid":"23418199","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/23418199","text":"We found that Sulf2 mRNA was overexpressed in lung samples from human patients with idiopathic pulmonary fibrosis (IPF), and Sulf2 protein was specifically localized to the hyperplastic type II alveolar epithelial cells (AECs).","tracks":[{"project":"Glycosmos6-MAT","denotations":[{"id":"T2","span":{"begin":46,"end":50},"obj":"http://purl.obolibrary.org/obo/MAT_0000135"}],"attributes":[{"subj":"T2","pred":"source","obj":"Glycosmos6-MAT"}]},{"project":"sentences","denotations":[{"id":"TextSentencer_T4","span":{"begin":0,"end":227},"obj":"Sentence"},{"id":"T4","span":{"begin":0,"end":227},"obj":"Sentence"},{"id":"T4","span":{"begin":0,"end":227},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"TextSentencer_T4","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"},{"subj":"T4","pred":"source","obj":"sentences"}]},{"project":"DisGeNET","denotations":[{"id":"T20","span":{"begin":14,"end":19},"obj":"gene:55959"},{"id":"T21","span":{"begin":84,"end":113},"obj":"disease:C3812887"},{"id":"T22","span":{"begin":125,"end":130},"obj":"gene:55959"},{"id":"T23","span":{"begin":115,"end":118},"obj":"disease:C3812887"},{"id":"T24","span":{"begin":14,"end":19},"obj":"gene:55959"},{"id":"T25","span":{"begin":115,"end":118},"obj":"disease:C1800706"},{"id":"T26","span":{"begin":14,"end":19},"obj":"gene:55959"},{"id":"T27","span":{"begin":84,"end":113},"obj":"disease:C1800706"},{"id":"T28","span":{"begin":14,"end":19},"obj":"gene:55959"},{"id":"T29","span":{"begin":115,"end":118},"obj":"disease:C3812887"},{"id":"T30","span":{"begin":125,"end":130},"obj":"gene:55959"},{"id":"T31","span":{"begin":84,"end":113},"obj":"disease:C3812887"},{"id":"T32","span":{"begin":125,"end":130},"obj":"gene:55959"},{"id":"T33","span":{"begin":84,"end":113},"obj":"disease:C1800706"},{"id":"T34","span":{"begin":125,"end":130},"obj":"gene:55959"},{"id":"T35","span":{"begin":115,"end":118},"obj":"disease:C1800706"}],"relations":[{"id":"R11","pred":"associated_with","subj":"T20","obj":"T21"},{"id":"R12","pred":"associated_with","subj":"T22","obj":"T23"},{"id":"R13","pred":"associated_with","subj":"T24","obj":"T25"},{"id":"R14","pred":"associated_with","subj":"T26","obj":"T27"},{"id":"R15","pred":"associated_with","subj":"T28","obj":"T29"},{"id":"R16","pred":"associated_with","subj":"T30","obj":"T31"},{"id":"R17","pred":"associated_with","subj":"T32","obj":"T33"},{"id":"R18","pred":"associated_with","subj":"T34","obj":"T35"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"attributes":[{"subj":"T20","pred":"source","obj":"DisGeNET"},{"subj":"T21","pred":"source","obj":"DisGeNET"},{"subj":"T22","pred":"source","obj":"DisGeNET"},{"subj":"T23","pred":"source","obj":"DisGeNET"},{"subj":"T24","pred":"source","obj":"DisGeNET"},{"subj":"T25","pred":"source","obj":"DisGeNET"},{"subj":"T26","pred":"source","obj":"DisGeNET"},{"subj":"T27","pred":"source","obj":"DisGeNET"},{"subj":"T28","pred":"source","obj":"DisGeNET"},{"subj":"T29","pred":"source","obj":"DisGeNET"},{"subj":"T30","pred":"source","obj":"DisGeNET"},{"subj":"T31","pred":"source","obj":"DisGeNET"},{"subj":"T32","pred":"source","obj":"DisGeNET"},{"subj":"T33","pred":"source","obj":"DisGeNET"},{"subj":"T34","pred":"source","obj":"DisGeNET"},{"subj":"T35","pred":"source","obj":"DisGeNET"}]},{"project":"GlycoBiology-FMA","denotations":[{"id":"_T17","span":{"begin":46,"end":50},"obj":"FMAID:7195"},{"id":"_T18","span":{"begin":46,"end":50},"obj":"FMAID:169341"},{"id":"_T19","span":{"begin":46,"end":50},"obj":"FMAID:93670"},{"id":"_T20","span":{"begin":95,"end":104},"obj":"FMAID:66326"},{"id":"_T21","span":{"begin":95,"end":104},"obj":"FMAID:171535"},{"id":"_T22","span":{"begin":131,"end":138},"obj":"FMAID:165447"},{"id":"_T23","span":{"begin":131,"end":138},"obj":"FMAID:67257"},{"id":"_T24","span":{"begin":186,"end":219},"obj":"FMAID:167082"},{"id":"_T25","span":{"begin":186,"end":219},"obj":"FMAID:62501"},{"id":"_T26","span":{"begin":186,"end":219},"obj":"FMAID:62500"},{"id":"_T27","span":{"begin":186,"end":219},"obj":"FMAID:167081"},{"id":"_T28","span":{"begin":186,"end":219},"obj":"FMAID:166735"},{"id":"_T29","span":{"begin":186,"end":219},"obj":"FMAID:166736"},{"id":"_T30","span":{"begin":194,"end":202},"obj":"FMAID:264783"},{"id":"_T31","span":{"begin":194,"end":202},"obj":"FMAID:242016"},{"id":"_T32","span":{"begin":194,"end":219},"obj":"FMAID:62499"},{"id":"_T33","span":{"begin":194,"end":219},"obj":"FMAID:166730"},{"id":"_T34","span":{"begin":203,"end":219},"obj":"FMAID:67559"},{"id":"_T35","span":{"begin":203,"end":219},"obj":"FMAID:83514"},{"id":"_T36","span":{"begin":203,"end":219},"obj":"FMAID:165731"},{"id":"_T37","span":{"begin":203,"end":219},"obj":"FMAID:169653"},{"id":"_T38","span":{"begin":203,"end":219},"obj":"FMAID:66768"},{"id":"_T39","span":{"begin":203,"end":219},"obj":"FMAID:197786"},{"id":"_T40","span":{"begin":203,"end":219},"obj":"FMAID:69074"},{"id":"_T41","span":{"begin":203,"end":219},"obj":"FMAID:164922"},{"id":"_T42","span":{"begin":203,"end":219},"obj":"FMAID:69075"},{"id":"_T43","span":{"begin":203,"end":219},"obj":"FMAID:169652"},{"id":"_T44","span":{"begin":203,"end":219},"obj":"FMAID:165528"},{"id":"_T45","span":{"begin":203,"end":219},"obj":"FMAID:67799"},{"id":"_T46","span":{"begin":214,"end":219},"obj":"FMAID:169002"},{"id":"_T47","span":{"begin":214,"end":219},"obj":"FMAID:68646"}],"namespaces":[{"prefix":"FMAID","uri":"http://purl.org/sig/ont/fma/fma"}],"attributes":[{"subj":"_T17","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T18","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T19","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T20","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T21","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T22","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T23","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T24","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T25","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T26","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T27","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T28","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T29","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T30","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T31","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T32","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T33","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T34","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T35","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T36","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T37","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T38","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T39","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T40","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T41","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T42","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T43","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T44","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T45","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T46","pred":"source","obj":"GlycoBiology-FMA"},{"subj":"_T47","pred":"source","obj":"GlycoBiology-FMA"}]},{"project":"uniprot-mouse","denotations":[{"id":"T4","span":{"begin":14,"end":19},"obj":"http://www.uniprot.org/uniprot/Q9D8E2"},{"id":"T5","span":{"begin":125,"end":130},"obj":"http://www.uniprot.org/uniprot/Q9D8E2"}],"attributes":[{"subj":"T4","pred":"source","obj":"uniprot-mouse"},{"subj":"T5","pred":"source","obj":"uniprot-mouse"}]},{"project":"GlycoBiology-NCBITAXON","denotations":[{"id":"T5","span":{"begin":95,"end":104},"obj":"http://purl.bioontology.org/ontology/NCBITAXON/136615"},{"id":"T6","span":{"begin":214,"end":219},"obj":"http://purl.bioontology.org/ontology/STY/T025"}],"attributes":[{"subj":"T5","pred":"source","obj":"GlycoBiology-NCBITAXON"},{"subj":"T6","pred":"source","obj":"GlycoBiology-NCBITAXON"}]},{"project":"GO-BP","denotations":[{"id":"T6","span":{"begin":156,"end":165},"obj":"http://purl.obolibrary.org/obo/GO_0051179"},{"id":"T7","span":{"begin":194,"end":202},"obj":"http://purl.obolibrary.org/obo/GO_0048286"}],"attributes":[{"subj":"T6","pred":"source","obj":"GO-BP"},{"subj":"T7","pred":"source","obj":"GO-BP"}]},{"project":"GO-CC","denotations":[{"id":"T1","span":{"begin":214,"end":219},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"attributes":[{"subj":"T1","pred":"source","obj":"GO-CC"}]},{"project":"UBERON-AE","denotations":[{"id":"T2","span":{"begin":46,"end":50},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"attributes":[{"subj":"T2","pred":"source","obj":"UBERON-AE"}]},{"project":"EDAM-topics","denotations":[{"id":"T3","span":{"begin":51,"end":58},"obj":"http://edamontology.org/topic_3277"},{"id":"T4","span":{"begin":64,"end":69},"obj":"http://edamontology.org/topic_2815"},{"id":"T5","span":{"begin":131,"end":138},"obj":"http://edamontology.org/topic_0078"}],"attributes":[{"subj":"T3","pred":"source","obj":"EDAM-topics"},{"subj":"T4","pred":"source","obj":"EDAM-topics"},{"subj":"T5","pred":"source","obj":"EDAM-topics"}]},{"project":"EDAM-DFO","denotations":[{"id":"T3","span":{"begin":131,"end":138},"obj":"http://edamontology.org/data_1467"},{"id":"T4","span":{"begin":131,"end":138},"obj":"http://edamontology.org/format_1208"}],"attributes":[{"subj":"T3","pred":"source","obj":"EDAM-DFO"},{"subj":"T4","pred":"source","obj":"EDAM-DFO"}]},{"project":"Allie","denotations":[{"id":"SS1_23418199_3_0","span":{"begin":84,"end":113},"obj":"expanded"},{"id":"SS2_23418199_3_0","span":{"begin":115,"end":118},"obj":"abbr"},{"id":"SS1_23418199_3_1","span":{"begin":194,"end":219},"obj":"expanded"},{"id":"SS2_23418199_3_1","span":{"begin":221,"end":225},"obj":"abbr"}],"relations":[{"id":"AE1_23418199_3_0","pred":"abbreviatedTo","subj":"SS1_23418199_3_0","obj":"SS2_23418199_3_0"},{"id":"AE1_23418199_3_1","pred":"abbreviatedTo","subj":"SS1_23418199_3_1","obj":"SS2_23418199_3_1"}],"attributes":[{"subj":"SS1_23418199_3_0","pred":"source","obj":"Allie"},{"subj":"SS2_23418199_3_0","pred":"source","obj":"Allie"},{"subj":"SS1_23418199_3_1","pred":"source","obj":"Allie"},{"subj":"SS2_23418199_3_1","pred":"source","obj":"Allie"}]},{"project":"PubmedHPO","denotations":[{"id":"T3","span":{"begin":95,"end":113},"obj":"HP_0002206"}],"attributes":[{"subj":"T3","pred":"source","obj":"PubmedHPO"}]},{"project":"GlycoBiology-MAT","denotations":[{"id":"T2","span":{"begin":46,"end":50},"obj":"http://purl.obolibrary.org/obo/MAT_0000135"}],"attributes":[{"subj":"T2","pred":"source","obj":"GlycoBiology-MAT"}]},{"project":"performance-test","denotations":[{"id":"PD-UBERON-AE-B_T2","span":{"begin":46,"end":50},"obj":"http://purl.obolibrary.org/obo/UBERON_0002048"}],"attributes":[{"subj":"PD-UBERON-AE-B_T2","pred":"source","obj":"performance-test"}]},{"project":"Anatomy-MAT","denotations":[{"id":"T2","span":{"begin":46,"end":50},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"mat_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/MAT_0000135"},{"subj":"T2","pred":"source","obj":"Anatomy-MAT"}]},{"project":"mondo_disease","denotations":[{"id":"T4","span":{"begin":84,"end":113},"obj":"Disease"},{"id":"T5","span":{"begin":115,"end":118},"obj":"Disease"},{"id":"T7","span":{"begin":173,"end":185},"obj":"Disease"}],"attributes":[{"id":"A4","pred":"mondo_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/MONDO_0008345"},{"id":"A5","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0002429"},{"id":"A6","pred":"mondo_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/MONDO_0008345"},{"id":"A7","pred":"mondo_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/MONDO_0005043"},{"subj":"T4","pred":"source","obj":"mondo_disease"},{"subj":"T5","pred":"source","obj":"mondo_disease"},{"subj":"T7","pred":"source","obj":"mondo_disease"}]},{"project":"NCBITAXON","denotations":[{"id":"T2","span":{"begin":64,"end":69},"obj":"OrganismTaxon"}],"attributes":[{"id":"A2","pred":"db_id","subj":"T2","obj":"9606"},{"subj":"T2","pred":"source","obj":"NCBITAXON"}]},{"project":"Anatomy-UBERON","denotations":[{"id":"T3","span":{"begin":46,"end":50},"obj":"Body_part"},{"id":"T4","span":{"begin":186,"end":219},"obj":"Body_part"},{"id":"T5","span":{"begin":221,"end":225},"obj":"Body_part"}],"attributes":[{"id":"A3","pred":"uberon_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/UBERON_0002048"},{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/CL_0002063"},{"id":"A5","pred":"uberon_id","subj":"T5","obj":"http://purl.obolibrary.org/obo/CL_0000322"},{"subj":"T3","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T4","pred":"source","obj":"Anatomy-UBERON"},{"subj":"T5","pred":"source","obj":"Anatomy-UBERON"}]},{"project":"HP-phenotype","denotations":[{"id":"T4","span":{"begin":95,"end":113},"obj":"Phenotype"}],"attributes":[{"id":"A4","pred":"hp_id","subj":"T4","obj":"HP:0002206"},{"subj":"T4","pred":"source","obj":"HP-phenotype"}],"namespaces":[{"prefix":"HP","uri":"http://purl.obolibrary.org/obo/HP_"}]},{"project":"CL-cell","denotations":[{"id":"T2","span":{"begin":186,"end":219},"obj":"Cell"},{"id":"T3","span":{"begin":221,"end":225},"obj":"Cell"}],"attributes":[{"id":"A2","pred":"cl_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/CL:0002063"},{"id":"A3","pred":"cl_id","subj":"T3","obj":"http://purl.obolibrary.org/obo/CL:0000322"},{"subj":"T2","pred":"source","obj":"CL-cell"},{"subj":"T3","pred":"source","obj":"CL-cell"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"Glycosmos6-MAT","color":"#d1ec93","default":true},{"id":"sentences","color":"#ec93eb"},{"id":"DisGeNET","color":"#93ecd3"},{"id":"GlycoBiology-FMA","color":"#ecb993"},{"id":"uniprot-mouse","color":"#9f93ec"},{"id":"GlycoBiology-NCBITAXON","color":"#a1ec93"},{"id":"GO-BP","color":"#ec93bb"},{"id":"GO-CC","color":"#93d5ec"},{"id":"UBERON-AE","color":"#ece993"},{"id":"EDAM-topics","color":"#cf93ec"},{"id":"EDAM-DFO","color":"#93ecb5"},{"id":"Allie","color":"#ec9b93"},{"id":"PubmedHPO","color":"#93a4ec"},{"id":"GlycoBiology-MAT","color":"#bfec93"},{"id":"performance-test","color":"#ec93d9"},{"id":"Anatomy-MAT","color":"#93ece5"},{"id":"mondo_disease","color":"#eccb93"},{"id":"NCBITAXON","color":"#b193ec"},{"id":"Anatomy-UBERON","color":"#93ec97"},{"id":"HP-phenotype","color":"#ec93a8"},{"id":"CL-cell","color":"#93c2ec"}]}]}}