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PubMed:23208007 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 0-15 https://glytoucan.org/Structures/Glycans/G00065MO denotes Polysialic acid
T2 79-94 https://glytoucan.org/Structures/Glycans/G00065MO denotes Polysialic acid
T3 96-103 https://glytoucan.org/Structures/Glycans/G00065MO denotes polySia
T4 173-184 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid
T5 609-616 https://glytoucan.org/Structures/Glycans/G00065MO denotes polySia
T6 929-936 https://glytoucan.org/Structures/Glycans/G00065MO denotes polySia
T7 1158-1165 https://glytoucan.org/Structures/Glycans/G00065MO denotes polySia

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 0-15 Glycan_Motif denotes Polysialic acid https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00065MO
T2 79-94 Glycan_Motif denotes Polysialic acid https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00065MO
T3 96-103 Glycan_Motif denotes polySia https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00065MO
T4 173-184 Glycan_Motif denotes sialic acid https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G81533KY
T5 609-616 Glycan_Motif denotes polySia https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00065MO
T6 929-936 Glycan_Motif denotes polySia https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00065MO
T7 1158-1165 Glycan_Motif denotes polySia https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00065MO

Glycosmos6-MAT

Id Subject Object Predicate Lexical cue
T1 227-241 http://purl.obolibrary.org/obo/MAT_0000026 denotes nervous system

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-78 Sentence denotes Polysialic acid enhances the migration and invasion of human cytotrophoblasts.
TextSentencer_T2 79-194 Sentence denotes Polysialic acid (polySia) is a large, cell-surface linear homopolymer composed of α2,8-linked sialic acid residues.
TextSentencer_T3 195-343 Sentence denotes Most extensively studied in the nervous system, this unique glycan modulates development by enhancing cell migration and regulating differentiation.
TextSentencer_T4 344-441 Sentence denotes PolySia also functions in developing and adult immune systems and is a signature of many cancers.
TextSentencer_T5 442-556 Sentence denotes In this study, we demonstrated that human placental trophoblasts, an epithelial lineage, also display this glycan.
TextSentencer_T6 557-692 Sentence denotes Cytotrophoblasts and syncytiotrophoblasts expressed polySia in the first trimester and downregulated it during the course of pregnancy.
TextSentencer_T7 693-784 Sentence denotes PolySia promoted cytotrophoblast migration in an explant model of chorionic villous growth.
TextSentencer_T8 785-904 Sentence denotes Removal of this glycan also reduced cytotrophoblast penetration of basement membranes in an in vitro model of invasion.
TextSentencer_T9 905-1088 Sentence denotes Finally, we showed that polySia was overexpressed in biopsies from patients with gestational trophoblastic diseases, including benign molar pregnancies and malignant choriocarcinomas.
TextSentencer_T10 1089-1305 Sentence denotes These results demonstrated, for the first time, functional roles for polySia during normal human placental development and implicated these unusual oligosaccharides in the unrestrained invasion of trophoblast tumors.
T1 0-78 Sentence denotes Polysialic acid enhances the migration and invasion of human cytotrophoblasts.
T2 79-194 Sentence denotes Polysialic acid (polySia) is a large, cell-surface linear homopolymer composed of α2,8-linked sialic acid residues.
T3 195-343 Sentence denotes Most extensively studied in the nervous system, this unique glycan modulates development by enhancing cell migration and regulating differentiation.
T4 344-441 Sentence denotes PolySia also functions in developing and adult immune systems and is a signature of many cancers.
T5 442-556 Sentence denotes In this study, we demonstrated that human placental trophoblasts, an epithelial lineage, also display this glycan.
T6 557-692 Sentence denotes Cytotrophoblasts and syncytiotrophoblasts expressed polySia in the first trimester and downregulated it during the course of pregnancy.
T7 693-784 Sentence denotes PolySia promoted cytotrophoblast migration in an explant model of chorionic villous growth.
T8 785-904 Sentence denotes Removal of this glycan also reduced cytotrophoblast penetration of basement membranes in an in vitro model of invasion.
T9 905-1088 Sentence denotes Finally, we showed that polySia was overexpressed in biopsies from patients with gestational trophoblastic diseases, including benign molar pregnancies and malignant choriocarcinomas.
T10 1089-1305 Sentence denotes These results demonstrated, for the first time, functional roles for polySia during normal human placental development and implicated these unusual oligosaccharides in the unrestrained invasion of trophoblast tumors.
T1 0-78 Sentence denotes Polysialic acid enhances the migration and invasion of human cytotrophoblasts.
T2 79-194 Sentence denotes Polysialic acid (polySia) is a large, cell-surface linear homopolymer composed of α2,8-linked sialic acid residues.
T3 195-343 Sentence denotes Most extensively studied in the nervous system, this unique glycan modulates development by enhancing cell migration and regulating differentiation.
T4 344-441 Sentence denotes PolySia also functions in developing and adult immune systems and is a signature of many cancers.
T5 442-556 Sentence denotes In this study, we demonstrated that human placental trophoblasts, an epithelial lineage, also display this glycan.
T6 557-692 Sentence denotes Cytotrophoblasts and syncytiotrophoblasts expressed polySia in the first trimester and downregulated it during the course of pregnancy.
T7 693-784 Sentence denotes PolySia promoted cytotrophoblast migration in an explant model of chorionic villous growth.
T8 785-904 Sentence denotes Removal of this glycan also reduced cytotrophoblast penetration of basement membranes in an in vitro model of invasion.
T9 905-1088 Sentence denotes Finally, we showed that polySia was overexpressed in biopsies from patients with gestational trophoblastic diseases, including benign molar pregnancies and malignant choriocarcinomas.
T10 1089-1305 Sentence denotes These results demonstrated, for the first time, functional roles for polySia during normal human placental development and implicated these unusual oligosaccharides in the unrestrained invasion of trophoblast tumors.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 0-15 https://glytoucan.org/Structures/Glycans/G00065MO denotes Polysialic acid
T2 79-94 https://glytoucan.org/Structures/Glycans/G00065MO denotes Polysialic acid
T3 173-184 https://glytoucan.org/Structures/Glycans/G81533KY denotes sialic acid

ICD10

Id Subject Object Predicate Lexical cue
T1 227-234 http://purl.bioontology.org/ontology/ICD10/R45.0 denotes nervous

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 61-77 FMAID:200947 denotes cytotrophoblasts
_T2 61-77 FMAID:83039 denotes cytotrophoblasts
_T3 61-77 FMAID:197301 denotes cytotrophoblasts
_T4 117-129 FMAID:212684 denotes cell-surface
_T5 117-129 FMAID:200942 denotes cell-surface
_T6 122-129 FMAID:50594 denotes surface
_T7 122-129 FMAID:146300 denotes surface
_T8 227-241 FMAID:7157 denotes nervous system
_T9 227-241 FMAID:93586 denotes nervous system
_T10 391-405 FMAID:9825 denotes immune systems
_T11 391-405 FMAID:97740 denotes immune systems
_T12 494-506 FMAID:197289 denotes trophoblasts
_T13 494-506 FMAID:83029 denotes trophoblasts
_T14 557-573 FMAID:83039 denotes Cytotrophoblasts
_T15 557-573 FMAID:197301 denotes Cytotrophoblasts
_T16 557-573 FMAID:200947 denotes Cytotrophoblasts
_T17 578-598 FMAID:83040 denotes syncytiotrophoblasts
_T18 578-598 FMAID:83043 denotes syncytiotrophoblasts
_T19 578-598 FMAID:197308 denotes syncytiotrophoblasts
_T20 578-598 FMAID:197302 denotes syncytiotrophoblasts
_T21 578-598 FMAID:197303 denotes syncytiotrophoblasts
_T22 578-598 FMAID:201968 denotes syncytiotrophoblasts
_T23 710-725 FMAID:200947 denotes cytotrophoblast
_T24 710-725 FMAID:83039 denotes cytotrophoblast
_T25 710-725 FMAID:197301 denotes cytotrophoblast
_T26 759-768 FMAID:80224 denotes chorionic
_T27 759-768 FMAID:188332 denotes chorionic
_T28 821-836 FMAID:197301 denotes cytotrophoblast
_T29 821-836 FMAID:83039 denotes cytotrophoblast
_T30 821-836 FMAID:200947 denotes cytotrophoblast
_T31 852-870 FMAID:167247 denotes basement membranes
_T32 852-870 FMAID:63872 denotes basement membranes
_T33 861-870 FMAID:30322 denotes membranes
_T34 861-870 FMAID:93573 denotes membranes
_T35 861-870 FMAID:7145 denotes membranes
_T36 861-870 FMAID:167608 denotes membranes
_T37 998-1011 FMAID:83029 denotes trophoblastic
_T38 998-1011 FMAID:197289 denotes trophoblastic
_T39 1237-1253 FMAID:82742 denotes oligosaccharides
_T40 1237-1253 FMAID:196731 denotes oligosaccharides
_T41 1286-1297 FMAID:83029 denotes trophoblast
_T42 1286-1297 FMAID:197289 denotes trophoblast

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 428-432 http://purl.bioontology.org/ontology/NCBITAXON/9973 denotes many
T2 433-440 http://purl.bioontology.org/ontology/NCBITAXON/6754 denotes cancers
T3 759-768 http://purl.bioontology.org/ontology/NCBITAXON/387016 denotes chorionic

GO-BP

Id Subject Object Predicate Lexical cue
T1 272-283 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T2 370-380 http://purl.obolibrary.org/obo/GO_0032502 denotes developing
T3 297-311 http://purl.obolibrary.org/obo/GO_0016477 denotes cell migration
T4 297-326 http://purl.obolibrary.org/obo/GO_0010762 denotes cell migration and regulating
T5 297-326 http://purl.obolibrary.org/obo/GO_0030335 denotes cell migration and regulating
T6 297-326 http://purl.obolibrary.org/obo/GO_0030336 denotes cell migration and regulating
T7 297-326 http://purl.obolibrary.org/obo/GO_1903684 denotes cell migration and regulating
T8 297-326 http://purl.obolibrary.org/obo/GO_2000274 denotes cell migration and regulating
T9 297-326 http://purl.obolibrary.org/obo/GO_0002685 denotes cell migration and regulating
T10 297-326 http://purl.obolibrary.org/obo/GO_0071675 denotes cell migration and regulating
T11 297-326 http://purl.obolibrary.org/obo/GO_1903975 denotes cell migration and regulating
T12 316-326 http://purl.obolibrary.org/obo/GO_0065007 denotes regulating
T13 484-493 http://purl.obolibrary.org/obo/GO_0001890 denotes placental
T14 1186-1195 http://purl.obolibrary.org/obo/GO_0001890 denotes placental
T15 777-783 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T16 986-997 http://purl.obolibrary.org/obo/GO_0007565 denotes gestational
T17 1186-1207 http://purl.obolibrary.org/obo/GO_0001890 denotes placental development

GO-CC

Id Subject Object Predicate Lexical cue
T1 117-121 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T2 297-301 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T3 117-129 http://purl.obolibrary.org/obo/GO_0009986 denotes cell-surface
T4 852-870 http://purl.obolibrary.org/obo/GO_0005604 denotes basement membranes
T5 861-870 http://purl.obolibrary.org/obo/GO_0016020 denotes membranes

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 61-77 http://purl.obolibrary.org/obo/UBERON_0000319 denotes cytotrophoblasts
T2 710-725 http://purl.obolibrary.org/obo/UBERON_0000319 denotes cytotrophoblast
T3 821-836 http://purl.obolibrary.org/obo/UBERON_0000319 denotes cytotrophoblast
T4 200-211 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extensively
T5 227-241 http://purl.obolibrary.org/obo/UBERON_0001016 denotes nervous system
T6 391-405 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune systems
T7 494-506 http://purl.obolibrary.org/obo/UBERON_0000088 denotes trophoblasts
T8 998-1011 http://purl.obolibrary.org/obo/UBERON_0000088 denotes trophoblastic
T9 1286-1297 http://purl.obolibrary.org/obo/UBERON_0000088 denotes trophoblast
T10 578-598 http://purl.obolibrary.org/obo/UBERON_0000371 denotes syncytiotrophoblasts
T11 759-768 http://purl.obolibrary.org/obo/UBERON_0003124 denotes chorionic

EDAM-topics

Id Subject Object Predicate Lexical cue
T1 55-60 http://edamontology.org/topic_2815 denotes human
T2 212-219 http://edamontology.org/topic_3678 denotes studied
T3 433-440 http://edamontology.org/topic_2640 denotes cancers
T4 450-455 http://edamontology.org/topic_3678 denotes study
T5 478-483 http://edamontology.org/topic_2815 denotes human
T6 701-709 http://edamontology.org/topic_1312 denotes promoted
T7 701-709 http://edamontology.org/topic_0111 denotes promoted
T8 701-709 http://edamontology.org/topic_0749 denotes promoted
T9 1012-1020 http://edamontology.org/topic_0634 denotes diseases
T10 1180-1185 http://edamontology.org/topic_2815 denotes human

EDAM-DFO

Id Subject Object Predicate Lexical cue
T1 185-193 http://edamontology.org/data_1756 denotes residues
T2 357-366 http://edamontology.org/operation_0004 denotes functions
T3 460-472 http://edamontology.org/operation_2246 denotes demonstrated
T4 1103-1115 http://edamontology.org/operation_2246 denotes demonstrated
T5 1173-1179 http://edamontology.org/operation_3435 denotes normal

Allie

Id Subject Object Predicate Lexical cue
SS1_23208007_1_0 79-94 expanded denotes Polysialic acid
SS2_23208007_1_0 96-103 abbr denotes polySia
AE1_23208007_1_0 SS1_23208007_1_0 SS2_23208007_1_0 abbreviatedTo Polysialic acid,polySia

PubmedHPO

Id Subject Object Predicate Lexical cue
T1 433-440 HP_0002664 denotes cancers
T2 1071-1087 HP_0100768 denotes choriocarcinomas
T3 1298-1304 HP_0002664 denotes tumors

GlycoBiology-MAT

Id Subject Object Predicate Lexical cue
T1 227-241 http://purl.obolibrary.org/obo/MAT_0000026 denotes nervous system

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 484-493 http://purl.obolibrary.org/obo/UBERON_0001987 denotes placental
PD-UBERON-AE-B_T2 1186-1195 http://purl.obolibrary.org/obo/UBERON_0001987 denotes placental
PD-UBERON-AE-B_T3 227-241 http://purl.obolibrary.org/obo/UBERON_0001016 denotes nervous system
PD-UBERON-AE-B_T4 759-768 http://purl.obolibrary.org/obo/UBERON_0003124 denotes chorionic
PD-UBERON-AE-B_T5 61-77 http://purl.obolibrary.org/obo/UBERON_0000319 denotes cytotrophoblasts
PD-UBERON-AE-B_T6 557-573 http://purl.obolibrary.org/obo/UBERON_0000319 denotes Cytotrophoblasts
PD-UBERON-AE-B_T7 710-725 http://purl.obolibrary.org/obo/UBERON_0000319 denotes cytotrophoblast
PD-UBERON-AE-B_T8 821-836 http://purl.obolibrary.org/obo/UBERON_0000319 denotes cytotrophoblast
PD-UBERON-AE-B_T9 200-211 http://purl.obolibrary.org/obo/UBERON_2000106 denotes extensively
PD-UBERON-AE-B_T10 391-405 http://purl.obolibrary.org/obo/UBERON_0002405 denotes immune systems
PD-UBERON-AE-B_T11 494-506 http://purl.obolibrary.org/obo/UBERON_0000088 denotes trophoblasts
PD-UBERON-AE-B_T12 998-1011 http://purl.obolibrary.org/obo/UBERON_0000088 denotes trophoblastic
PD-UBERON-AE-B_T13 1286-1297 http://purl.obolibrary.org/obo/UBERON_0000088 denotes trophoblast
PD-UBERON-AE-B_T14 578-598 http://purl.obolibrary.org/obo/UBERON_0000371 denotes syncytiotrophoblasts

CHEMDNER-training-test

Id Subject Object Predicate Lexical cue
T1 173-184 TRIVIAL denotes sialic acid

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 227-241 Body_part denotes nervous system http://purl.obolibrary.org/obo/MAT_0000026

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 1071-1087 Phenotype denotes choriocarcinomas HP:0100768
T2 1286-1304 Phenotype denotes trophoblast tumors HP:0031502

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 986-1020 Disease denotes gestational trophoblastic diseases http://purl.obolibrary.org/obo/MONDO_0009273|http://purl.obolibrary.org/obo/MONDO_0016784|http://purl.obolibrary.org/obo/MONDO_0018944
T4 1039-1056 Disease denotes molar pregnancies http://purl.obolibrary.org/obo/MONDO_0006248|http://purl.obolibrary.org/obo/MONDO_0018944
T6 1071-1087 Disease denotes choriocarcinomas http://purl.obolibrary.org/obo/MONDO_0005207
T7 1286-1304 Disease denotes trophoblast tumors http://purl.obolibrary.org/obo/MONDO_0002872

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 55-60 OrganismTaxon denotes human 9606
T2 478-483 OrganismTaxon denotes human 9606
T3 1180-1185 OrganismTaxon denotes human 9606

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 391-405 Body_part denotes immune systems http://purl.obolibrary.org/obo/UBERON_0002405
T4 494-506 Body_part denotes trophoblasts http://purl.obolibrary.org/obo/UBERON_0000088
T5 557-573 Body_part denotes Cytotrophoblasts http://purl.obolibrary.org/obo/UBERON_0000319
T6 578-598 Body_part denotes syncytiotrophoblasts http://purl.obolibrary.org/obo/UBERON_0000371
T7 710-725 Body_part denotes cytotrophoblast http://purl.obolibrary.org/obo/UBERON_0000319
T8 759-776 Body_part denotes chorionic villous http://purl.obolibrary.org/obo/UBERON_0007106
T9 821-836 Body_part denotes cytotrophoblast http://purl.obolibrary.org/obo/UBERON_0000319
T10 852-870 Body_part denotes basement membranes http://purl.obolibrary.org/obo/GO_0005604|http://purl.obolibrary.org/obo/UBERON_0005769
T12 998-1011 Body_part denotes trophoblastic http://purl.obolibrary.org/obo/UBERON_0000088
T13 1039-1044 Body_part denotes molar http://purl.obolibrary.org/obo/UBERON_0003655
T14 1286-1297 Body_part denotes trophoblast http://purl.obolibrary.org/obo/UBERON_0000088
T1 61-77 Body_part denotes cytotrophoblasts http://purl.obolibrary.org/obo/UBERON_0000319
T2 227-241 Body_part denotes nervous system http://purl.obolibrary.org/obo/UBERON_0001016