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PubMed:2263449 JSONTXT

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OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 40-48 http://identifiers.org/oryzabase.gene/22725 denotes glutelin
T2 40-48 http://identifiers.org/oryzabase.gene/13733 denotes glutelin
T3 185-193 http://identifiers.org/oryzabase.gene/22725 denotes glutelin
T4 185-193 http://identifiers.org/oryzabase.gene/13733 denotes glutelin
T97992 40-48 http://identifiers.org/ricegap/LOC_Os02g25860 denotes glutelin
T5611 185-193 http://identifiers.org/ricegap/LOC_Os02g25860 denotes glutelin
T64268 200-204 http://identifiers.org/ricegap/LOC_Os06g40880 denotes pGL5
T56555 635-639 http://identifiers.org/ricegap/LOC_Os06g40880 denotes pGL5
T5 791-795 http://identifiers.org/ricegap/LOC_Os06g40880 denotes pGL5
T29676 40-48 http://identifiers.org/rapdb.locus/Os02g0456100 denotes glutelin
T4542 185-193 http://identifiers.org/rapdb.locus/Os02g0456100 denotes glutelin
T79471 200-204 http://identifiers.org/rapdb.locus/Os06g0611400 denotes pGL5
T55916 635-639 http://identifiers.org/rapdb.locus/Os06g0611400 denotes pGL5
T5784 791-795 http://identifiers.org/rapdb.locus/Os06g0611400 denotes pGL5
T84011 40-48 http://identifiers.org/uniprot/Q9ZWJ8 denotes glutelin
T96698 185-193 http://identifiers.org/uniprot/Q9ZWJ8 denotes glutelin
M_0 1142-1163 hunflair:NA:Gene denotes transcription factors
M_1 451-469 hunflair:NA:Gene denotes beta-glucuronidase
M_2 1117-1123 hunflair:NA:Species denotes plants
M_3 35-39 hunflair:NA:Species denotes rice
M_4 177-181 hunflair:NA:Species denotes rice
M_5 239-243 hunflair:NA:Species denotes rice
M_6 376-380 hunflair:NA:Species denotes rice
M_7 677-681 hunflair:NA:Species denotes rice
M_8 816-839 hunflair:NA:Gene denotes nuclear protein factors
M_9 471-474 hunflair:NA:Gene denotes GUS
M_10 503-506 hunflair:NA:Gene denotes GUS
M_11 200-206 hunflair:NA:Gene denotes pGL5-1
M_12 635-641 hunflair:NA:Gene denotes pGL5-1
M_13 791-797 hunflair:NA:Gene denotes pGL5-1
M_14 1172-1176 hunflair:NA:Gene denotes GCN4
M_15 855-862 hunflair:NA:Gene denotes DNase I
M_16 40-48 hunflair:NA:Gene denotes glutelin
M_17 185-193 hunflair:NA:Gene denotes glutelin

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 40-48 http://identifiers.org/oryzabase.gene/22725 denotes glutelin
T2 40-48 http://identifiers.org/oryzabase.gene/13733 denotes glutelin
T3 185-193 http://identifiers.org/oryzabase.gene/22725 denotes glutelin
T4 185-193 http://identifiers.org/oryzabase.gene/13733 denotes glutelin
T5 205-206 http://identifiers.org/oryzabase.gene/11216 denotes 1
T6 640-641 http://identifiers.org/oryzabase.gene/11216 denotes 1
T7 796-797 http://identifiers.org/oryzabase.gene/11216 denotes 1

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 200-204 http://identifiers.org/oryzabase.gene/22282 denotes pGL5
T2 635-639 http://identifiers.org/oryzabase.gene/22282 denotes pGL5
T3 791-795 http://identifiers.org/oryzabase.gene/22282 denotes pGL5
T90747 200-204 http://identifiers.org/rapdb.locus/Os06g0611400 denotes pGL5
T41113 635-639 http://identifiers.org/rapdb.locus/Os06g0611400 denotes pGL5
T81934 791-795 http://identifiers.org/rapdb.locus/Os06g0611400 denotes pGL5

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 1142-1163 hunflair:NA:Gene denotes transcription factors
M_1 451-469 hunflair:NA:Gene denotes beta-glucuronidase
M_2 1117-1123 hunflair:NA:Species denotes plants
M_3 35-39 hunflair:NA:Species denotes rice
M_4 177-181 hunflair:NA:Species denotes rice
M_5 239-243 hunflair:NA:Species denotes rice
M_6 376-380 hunflair:NA:Species denotes rice
M_7 677-681 hunflair:NA:Species denotes rice
M_8 816-839 hunflair:NA:Gene denotes nuclear protein factors
M_9 471-474 hunflair:NA:Gene denotes GUS
M_10 503-506 hunflair:NA:Gene denotes GUS
M_11 200-206 hunflair:NA:Gene denotes pGL5-1
M_12 635-641 hunflair:NA:Gene denotes pGL5-1
M_13 791-797 hunflair:NA:Gene denotes pGL5-1
M_14 1172-1176 hunflair:NA:Gene denotes GCN4
M_15 855-862 hunflair:NA:Gene denotes DNase I
M_16 40-48 hunflair:NA:Gene denotes glutelin
M_17 185-193 hunflair:NA:Gene denotes glutelin

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-65 Sentence denotes Multiple protein factors bind to a rice glutelin promoter region.
T2 66-182 Sentence denotes Our goal is to identify cis-acting elements in the regulatory region of the major seed storage protein gene in rice.
T3 183-331 Sentence denotes A glutelin gene (pGL5-1) has been cloned by screening a rice genomic DNA library with synthetic oligonucleotides and with an amplified DNA fragment.
T4 332-521 Sentence denotes A transient expression assay using immature rice seeds shows that its 5' flanking sequence can direct the synthesis of beta-glucuronidase (GUS) when fused upstream of the GUS coding region.
T5 522-688 Sentence denotes Gel-retardation assays were performed to study protein-DNA interactions between putative regulatory sequences of pGL5-1 and nuclear proteins from immature rice seeds.
T6 689-840 Sentence denotes We demonstrate that at least six protein-DNA complexes are formed between the 5' flanking sequence of pGL5-1 (-677 to -45) and nuclear protein factors.
T7 841-928 Sentence denotes By subsequent DNase I-footprinting analyses we defined several protein-binding regions.
T8 929-1182 Sentence denotes Two of the protein-binding sequences contain the TGAGTCA motif, which is also present in the -300 element found in the 5' flanking sequences of several storage protein genes of other crop plants, and to which the transcription factors jun and GCN4 bind.