PubMed:22114072 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"http://pubannotation.org/docs/sourcedb/PubMed/sourceid/22114072","sourcedb":"PubMed","sourceid":"22114072","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/22114072","text":"Gain-of-function mutant p53 upregulates CXC chemokines and enhances cell migration.\nThe role of dominant transforming p53 in carcinogenesis is poorly understood. Our previous data suggested that aberrant p53 proteins can enhance tumorigenesis and metastasis. Here, we examined potential mechanisms through which gain-of-function (GOF) p53 proteins can induce motility. Cells expressing GOF p53 -R175H, -R273H and -D281G showed enhanced migration, which was reversed by RNA interference (RNAi) or transactivation-deficient mutants. In cells with engineered or endogenous p53 mutants, enhanced migration was reduced by downregulation of nuclear factor-kappaB2, a GOF p53 target. We found that GOF p53 proteins upregulate CXC-chemokine expression, the inflammatory mediators that contribute to multiple aspects of tumorigenesis. Elevated expression of CXCL5, CXCL8 and CXCL12 was found in cells expressing oncogenic p53. Transcription was elevated as CXCL5 and CXCL8 promoter activity was higher in cells expressing GOF p53, whereas wild-type p53 repressed promoter activity. Chromatin immunoprecipitation assays revealed enhanced presence of acetylated histone H3 on the CXCL5 promoter in H1299/R273H cells, in agreement with increased transcriptional activity of the promoter, whereas RNAi-mediated repression of CXCL5 inhibited cell migration. Consistent with this, knockdown of the endogenous mutant p53 in lung cancer or melanoma cells reduced CXCL5 expression and cell migration. Furthermore, short hairpin RNA knockdown of mutant p53 in MDA-MB-231 cells reduced expression of a number of key targets, including several chemokines and other inflammatory mediators. Finally, CXCL5 expression was also elevated in lung tumor samples containing GOF p53, indicating relevance to human cancer. The data suggest a mechanistic link between GOF p53 proteins and chemokines in enhanced cell motility.","tracks":[{"project":"sonoma2","denotations":[{"id":"T0","span":{"begin":0,"end":16},"obj":"POSREG"},{"id":"T1","span":{"begin":17,"end":23},"obj":"VAR"},{"id":"T2","span":{"begin":24,"end":27},"obj":"GENE"},{"id":"T3","span":{"begin":28,"end":39},"obj":"POSREG"},{"id":"T4","span":{"begin":44,"end":54},"obj":"MPA"},{"id":"T5","span":{"begin":59,"end":67},"obj":"POSREG"},{"id":"T6","span":{"begin":73,"end":82},"obj":"CPA"},{"id":"T7","span":{"begin":118,"end":121},"obj":"GENE"},{"id":"T8","span":{"begin":125,"end":139},"obj":"DISEASE"},{"id":"T9","span":{"begin":204,"end":216},"obj":"GENE"},{"id":"T10","span":{"begin":204,"end":207},"obj":"GENE"},{"id":"T11","span":{"begin":221,"end":228},"obj":"POSREG"},{"id":"T12","span":{"begin":229,"end":242},"obj":"CPA"},{"id":"T13","span":{"begin":247,"end":257},"obj":"CPA"},{"id":"T14","span":{"begin":312,"end":328},"obj":"POSREG"},{"id":"T15","span":{"begin":330,"end":333},"obj":"POSREG"},{"id":"T16","span":{"begin":335,"end":338},"obj":"GENE"},{"id":"T17","span":{"begin":352,"end":358},"obj":"POSREG"},{"id":"T18","span":{"begin":359,"end":367},"obj":"CPA"},{"id":"T19","span":{"begin":390,"end":393},"obj":"GENE"},{"id":"T20","span":{"begin":394,"end":400},"obj":"VAR"},{"id":"T21","span":{"begin":402,"end":408},"obj":"VAR"},{"id":"T22","span":{"begin":413,"end":418},"obj":"VAR"},{"id":"T23","span":{"begin":427,"end":435},"obj":"POSREG"},{"id":"T24","span":{"begin":436,"end":445},"obj":"CPA"},{"id":"T25","span":{"begin":570,"end":573},"obj":"GENE"},{"id":"T26","span":{"begin":574,"end":581},"obj":"VAR"},{"id":"T27","span":{"begin":583,"end":591},"obj":"POSREG"},{"id":"T28","span":{"begin":592,"end":601},"obj":"CPA"},{"id":"T29","span":{"begin":606,"end":613},"obj":"NEGREG"},{"id":"T30","span":{"begin":617,"end":631},"obj":"NEGREG"},{"id":"T31","span":{"begin":643,"end":657},"obj":"GENE"},{"id":"T32","span":{"begin":665,"end":668},"obj":"GENE"},{"id":"T33","span":{"begin":691,"end":694},"obj":"POSREG"},{"id":"T34","span":{"begin":695,"end":698},"obj":"GENE"},{"id":"T35","span":{"begin":695,"end":698},"obj":"GENE"},{"id":"T36","span":{"begin":708,"end":718},"obj":"POSREG"},{"id":"T37","span":{"begin":733,"end":743},"obj":"MPA"},{"id":"T38","span":{"begin":749,"end":771},"obj":"MPA"},{"id":"T39","span":{"begin":777,"end":787},"obj":"REG"},{"id":"T40","span":{"begin":811,"end":824},"obj":"CPA"},{"id":"T41","span":{"begin":826,"end":834},"obj":"POSREG"},{"id":"T42","span":{"begin":835,"end":845},"obj":"MPA"},{"id":"T43","span":{"begin":849,"end":854},"obj":"GENE"},{"id":"T44","span":{"begin":856,"end":861},"obj":"GENE"},{"id":"T45","span":{"begin":866,"end":872},"obj":"GENE"},{"id":"T46","span":{"begin":913,"end":916},"obj":"GENE"},{"id":"T47","span":{"begin":918,"end":931},"obj":"MPA"},{"id":"T48","span":{"begin":936,"end":944},"obj":"POSREG"},{"id":"T49","span":{"begin":948,"end":953},"obj":"GENE"},{"id":"T50","span":{"begin":958,"end":963},"obj":"GENE"},{"id":"T51","span":{"begin":986,"end":992},"obj":"POSREG"},{"id":"T52","span":{"begin":1017,"end":1020},"obj":"GENE"},{"id":"T53","span":{"begin":1040,"end":1043},"obj":"GENE"},{"id":"T54","span":{"begin":1044,"end":1053},"obj":"NEGREG"},{"id":"T55","span":{"begin":1119,"end":1127},"obj":"POSREG"},{"id":"T56","span":{"begin":1128,"end":1136},"obj":"MPA"},{"id":"T57","span":{"begin":1169,"end":1174},"obj":"GENE"},{"id":"T58","span":{"begin":1187,"end":1198},"obj":"VAR"},{"id":"T59","span":{"begin":1224,"end":1233},"obj":"POSREG"},{"id":"T60","span":{"begin":1234,"end":1258},"obj":"MPA"},{"id":"T61","span":{"begin":1298,"end":1308},"obj":"NEGREG"},{"id":"T62","span":{"begin":1312,"end":1317},"obj":"GENE"},{"id":"T63","span":{"begin":1318,"end":1327},"obj":"NEGREG"},{"id":"T64","span":{"begin":1333,"end":1342},"obj":"CPA"},{"id":"T65","span":{"begin":1366,"end":1375},"obj":"VAR"},{"id":"T66","span":{"begin":1394,"end":1400},"obj":"VAR"},{"id":"T67","span":{"begin":1401,"end":1404},"obj":"GENE"},{"id":"T68","span":{"begin":1408,"end":1419},"obj":"DISEASE"},{"id":"T69","span":{"begin":1423,"end":1431},"obj":"DISEASE"},{"id":"T70","span":{"begin":1438,"end":1445},"obj":"NEGREG"},{"id":"T71","span":{"begin":1446,"end":1451},"obj":"GENE"},{"id":"T72","span":{"begin":1452,"end":1462},"obj":"MPA"},{"id":"T73","span":{"begin":1467,"end":1481},"obj":"CPA"},{"id":"T74","span":{"begin":1514,"end":1523},"obj":"VAR"},{"id":"T75","span":{"begin":1527,"end":1533},"obj":"VAR"},{"id":"T76","span":{"begin":1534,"end":1537},"obj":"GENE"},{"id":"T77","span":{"begin":1558,"end":1565},"obj":"NEGREG"},{"id":"T78","span":{"begin":1566,"end":1576},"obj":"MPA"},{"id":"T79","span":{"begin":1596,"end":1603},"obj":"MPA"},{"id":"T80","span":{"begin":1644,"end":1666},"obj":"MPA"},{"id":"T81","span":{"begin":1677,"end":1682},"obj":"GENE"},{"id":"T82","span":{"begin":1683,"end":1693},"obj":"MPA"},{"id":"T83","span":{"begin":1703,"end":1711},"obj":"POSREG"},{"id":"T84","span":{"begin":1715,"end":1725},"obj":"DISEASE"},{"id":"T85","span":{"begin":1749,"end":1752},"obj":"GENE"},{"id":"T86","span":{"begin":1765,"end":1774},"obj":"REG"},{"id":"T87","span":{"begin":1784,"end":1790},"obj":"DISEASE"},{"id":"T88","span":{"begin":1836,"end":1839},"obj":"POSREG"},{"id":"T89","span":{"begin":1840,"end":1843},"obj":"GENE"},{"id":"T90","span":{"begin":1857,"end":1867},"obj":"GENE"},{"id":"T91","span":{"begin":1871,"end":1879},"obj":"POSREG"},{"id":"T92","span":{"begin":1885,"end":1893},"obj":"CPA"}],"relations":[{"id":"R70","pred":"CauseOf","subj":"T75","obj":"T77"},{"id":"R71","pred":"ThemeOf","subj":"T76","obj":"T74"},{"id":"R72","pred":"ThemeOf","subj":"T76","obj":"T75"},{"id":"R73","pred":"ThemeOf","subj":"T78","obj":"T77"},{"id":"R74","pred":"ThemeOf","subj":"T79","obj":"T78"},{"id":"R75","pred":"ThemeOf","subj":"T79","obj":"T77"},{"id":"R0","pred":"CauseOf","subj":"T0","obj":"T3"},{"id":"R1","pred":"CauseOf","subj":"T0","obj":"T5"},{"id":"R2","pred":"CauseOf","subj":"T1","obj":"T0"},{"id":"R3","pred":"CauseOf","subj":"T1","obj":"T3"},{"id":"R4","pred":"CauseOf","subj":"T1","obj":"T5"},{"id":"R5","pred":"ThemeOf","subj":"T2","obj":"T1"},{"id":"R6","pred":"ThemeOf","subj":"T4","obj":"T0"},{"id":"R7","pred":"ThemeOf","subj":"T4","obj":"T3"},{"id":"R8","pred":"ThemeOf","subj":"T6","obj":"T0"},{"id":"R9","pred":"ThemeOf","subj":"T6","obj":"T5"},{"id":"R10","pred":"ThemeOf","subj":"T12","obj":"T11"},{"id":"R11","pred":"ThemeOf","subj":"T13","obj":"T11"},{"id":"R12","pred":"CauseOf","subj":"T15","obj":"T14"},{"id":"R13","pred":"CauseOf","subj":"T14","obj":"T17"},{"id":"R14","pred":"CauseOf","subj":"T15","obj":"T17"},{"id":"R15","pred":"ThemeOf","subj":"T18","obj":"T14"},{"id":"R16","pred":"ThemeOf","subj":"T18","obj":"T17"},{"id":"R17","pred":"ThemeOf","subj":"T19","obj":"T20"},{"id":"R18","pred":"ThemeOf","subj":"T19","obj":"T21"},{"id":"R19","pred":"ThemeOf","subj":"T19","obj":"T22"},{"id":"R20","pred":"CauseOf","subj":"T20","obj":"T23"},{"id":"R21","pred":"CauseOf","subj":"T21","obj":"T23"},{"id":"R22","pred":"CauseOf","subj":"T22","obj":"T23"},{"id":"R23","pred":"ThemeOf","subj":"T24","obj":"T23"},{"id":"R24","pred":"ThemeOf","subj":"T25","obj":"T26"},{"id":"R25","pred":"CauseOf","subj":"T26","obj":"T27"},{"id":"R26","pred":"CauseOf","subj":"T26","obj":"T29"},{"id":"R27","pred":"ThemeOf","subj":"T28","obj":"T27"},{"id":"R28","pred":"ThemeOf","subj":"T28","obj":"T29"},{"id":"R29","pred":"CauseOf","subj":"T30","obj":"T27"},{"id":"R30","pred":"CauseOf","subj":"T30","obj":"T29"},{"id":"R31","pred":"ThemeOf","subj":"T31","obj":"T30"},{"id":"R32","pred":"CauseOf","subj":"T33","obj":"T36"},{"id":"R33","pred":"CauseOf","subj":"T33","obj":"T39"},{"id":"R34","pred":"ThemeOf","subj":"T34","obj":"T33"},{"id":"R35","pred":"ThemeOf","subj":"T37","obj":"T36"},{"id":"R36","pred":"ThemeOf","subj":"T37","obj":"T39"},{"id":"R37","pred":"ThemeOf","subj":"T40","obj":"T37"},{"id":"R38","pred":"ThemeOf","subj":"T38","obj":"T36"},{"id":"R39","pred":"ThemeOf","subj":"T38","obj":"T37"},{"id":"R40","pred":"ThemeOf","subj":"T38","obj":"T39"},{"id":"R41","pred":"ThemeOf","subj":"T40","obj":"T33"},{"id":"R42","pred":"ThemeOf","subj":"T40","obj":"T36"},{"id":"R43","pred":"ThemeOf","subj":"T40","obj":"T39"},{"id":"R44","pred":"ThemeOf","subj":"T42","obj":"T41"},{"id":"R45","pred":"ThemeOf","subj":"T43","obj":"T41"},{"id":"R46","pred":"ThemeOf","subj":"T43","obj":"T42"},{"id":"R47","pred":"ThemeOf","subj":"T44","obj":"T41"},{"id":"R48","pred":"ThemeOf","subj":"T44","obj":"T42"},{"id":"R49","pred":"ThemeOf","subj":"T45","obj":"T41"},{"id":"R50","pred":"ThemeOf","subj":"T45","obj":"T42"},{"id":"R51","pred":"ThemeOf","subj":"T46","obj":"T42"},{"id":"R52","pred":"ThemeOf","subj":"T47","obj":"T48"},{"id":"R53","pred":"ThemeOf","subj":"T50","obj":"T48"},{"id":"R54","pred":"ThemeOf","subj":"T56","obj":"T55"},{"id":"R55","pred":"ThemeOf","subj":"T57","obj":"T56"},{"id":"R56","pred":"CauseOf","subj":"T58","obj":"T55"},{"id":"R57","pred":"CauseOf","subj":"T58","obj":"T59"},{"id":"R58","pred":"ThemeOf","subj":"T60","obj":"T59"},{"id":"R59","pred":"ThemeOf","subj":"T62","obj":"T61"},{"id":"R60","pred":"ThemeOf","subj":"T64","obj":"T63"},{"id":"R61","pred":"CauseOf","subj":"T65","obj":"T70"},{"id":"R62","pred":"CauseOf","subj":"T66","obj":"T70"},{"id":"R63","pred":"ThemeOf","subj":"T67","obj":"T65"},{"id":"R64","pred":"ThemeOf","subj":"T67","obj":"T66"},{"id":"R65","pred":"ThemeOf","subj":"T68","obj":"T70"},{"id":"R66","pred":"ThemeOf","subj":"T69","obj":"T70"},{"id":"R67","pred":"ThemeOf","subj":"T72","obj":"T70"},{"id":"R68","pred":"ThemeOf","subj":"T73","obj":"T70"},{"id":"R69","pred":"CauseOf","subj":"T74","obj":"T77"},{"id":"R76","pred":"ThemeOf","subj":"T80","obj":"T77"},{"id":"R77","pred":"ThemeOf","subj":"T80","obj":"T78"},{"id":"R78","pred":"ThemeOf","subj":"T80","obj":"T79"},{"id":"R79","pred":"ThemeOf","subj":"T82","obj":"T83"},{"id":"R80","pred":"ThemeOf","subj":"T82","obj":"T86"},{"id":"R81","pred":"CauseOf","subj":"T88","obj":"T91"},{"id":"R82","pred":"ThemeOf","subj":"T89","obj":"T88"},{"id":"R83","pred":"ThemeOf","subj":"T90","obj":"T88"},{"id":"R84","pred":"ThemeOf","subj":"T90","obj":"T91"},{"id":"R85","pred":"ThemeOf","subj":"T92","obj":"T91"}],"attributes":[{"subj":"T0","pred":"source","obj":"sonoma2"},{"subj":"T1","pred":"source","obj":"sonoma2"},{"subj":"T2","pred":"source","obj":"sonoma2"},{"subj":"T3","pred":"source","obj":"sonoma2"},{"subj":"T4","pred":"source","obj":"sonoma2"},{"subj":"T5","pred":"source","obj":"sonoma2"},{"subj":"T6","pred":"source","obj":"sonoma2"},{"subj":"T7","pred":"source","obj":"sonoma2"},{"subj":"T8","pred":"source","obj":"sonoma2"},{"subj":"T9","pred":"source","obj":"sonoma2"},{"subj":"T10","pred":"source","obj":"sonoma2"},{"subj":"T11","pred":"source","obj":"sonoma2"},{"subj":"T12","pred":"source","obj":"sonoma2"},{"subj":"T13","pred":"source","obj":"sonoma2"},{"subj":"T14","pred":"source","obj":"sonoma2"},{"subj":"T15","pred":"source","obj":"sonoma2"},{"subj":"T16","pred":"source","obj":"sonoma2"},{"subj":"T17","pred":"source","obj":"sonoma2"},{"subj":"T18","pred":"source","obj":"sonoma2"},{"subj":"T19","pred":"source","obj":"sonoma2"},{"subj":"T20","pred":"source","obj":"sonoma2"},{"subj":"T21","pred":"source","obj":"sonoma2"},{"subj":"T22","pred":"source","obj":"sonoma2"},{"subj":"T23","pred":"source","obj":"sonoma2"},{"subj":"T24","pred":"source","obj":"sonoma2"},{"subj":"T25","pred":"source","obj":"sonoma2"},{"subj":"T26","pred":"source","obj":"sonoma2"},{"subj":"T27","pred":"source","obj":"sonoma2"},{"subj":"T28","pred":"source","obj":"sonoma2"},{"subj":"T29","pred":"source","obj":"sonoma2"},{"subj":"T30","pred":"source","obj":"sonoma2"},{"subj":"T31","pred":"source","obj":"sonoma2"},{"subj":"T32","pred":"source","obj":"sonoma2"},{"subj":"T33","pred":"source","obj":"sonoma2"},{"subj":"T34","pred":"source","obj":"sonoma2"},{"subj":"T35","pred":"source","obj":"sonoma2"},{"subj":"T36","pred":"source","obj":"sonoma2"},{"subj":"T37","pred":"source","obj":"sonoma2"},{"subj":"T38","pred":"source","obj":"sonoma2"},{"subj":"T39","pred":"source","obj":"sonoma2"},{"subj":"T40","pred":"source","obj":"sonoma2"},{"subj":"T41","pred":"source","obj":"sonoma2"},{"subj":"T42","pred":"source","obj":"sonoma2"},{"subj":"T43","pred":"source","obj":"sonoma2"},{"subj":"T44","pred":"source","obj":"sonoma2"},{"subj":"T45","pred":"source","obj":"sonoma2"},{"subj":"T46","pred":"source","obj":"sonoma2"},{"subj":"T47","pred":"source","obj":"sonoma2"},{"subj":"T48","pred":"source","obj":"sonoma2"},{"subj":"T49","pred":"source","obj":"sonoma2"},{"subj":"T50","pred":"source","obj":"sonoma2"},{"subj":"T51","pred":"source","obj":"sonoma2"},{"subj":"T52","pred":"source","obj":"sonoma2"},{"subj":"T53","pred":"source","obj":"sonoma2"},{"subj":"T54","pred":"source","obj":"sonoma2"},{"subj":"T55","pred":"source","obj":"sonoma2"},{"subj":"T56","pred":"source","obj":"sonoma2"},{"subj":"T57","pred":"source","obj":"sonoma2"},{"subj":"T58","pred":"source","obj":"sonoma2"},{"subj":"T59","pred":"source","obj":"sonoma2"},{"subj":"T60","pred":"source","obj":"sonoma2"},{"subj":"T61","pred":"source","obj":"sonoma2"},{"subj":"T62","pred":"source","obj":"sonoma2"},{"subj":"T63","pred":"source","obj":"sonoma2"},{"subj":"T64","pred":"source","obj":"sonoma2"},{"subj":"T65","pred":"source","obj":"sonoma2"},{"subj":"T66","pred":"source","obj":"sonoma2"},{"subj":"T67","pred":"source","obj":"sonoma2"},{"subj":"T68","pred":"source","obj":"sonoma2"},{"subj":"T69","pred":"source","obj":"sonoma2"},{"subj":"T70","pred":"source","obj":"sonoma2"},{"subj":"T71","pred":"source","obj":"sonoma2"},{"subj":"T72","pred":"source","obj":"sonoma2"},{"subj":"T73","pred":"source","obj":"sonoma2"},{"subj":"T74","pred":"source","obj":"sonoma2"},{"subj":"T75","pred":"source","obj":"sonoma2"},{"subj":"T76","pred":"source","obj":"sonoma2"},{"subj":"T77","pred":"source","obj":"sonoma2"},{"subj":"T78","pred":"source","obj":"sonoma2"},{"subj":"T79","pred":"source","obj":"sonoma2"},{"subj":"T80","pred":"source","obj":"sonoma2"},{"subj":"T81","pred":"source","obj":"sonoma2"},{"subj":"T82","pred":"source","obj":"sonoma2"},{"subj":"T83","pred":"source","obj":"sonoma2"},{"subj":"T84","pred":"source","obj":"sonoma2"},{"subj":"T85","pred":"source","obj":"sonoma2"},{"subj":"T86","pred":"source","obj":"sonoma2"},{"subj":"T87","pred":"source","obj":"sonoma2"},{"subj":"T88","pred":"source","obj":"sonoma2"},{"subj":"T89","pred":"source","obj":"sonoma2"},{"subj":"T90","pred":"source","obj":"sonoma2"},{"subj":"T91","pred":"source","obj":"sonoma2"},{"subj":"T92","pred":"source","obj":"sonoma2"}]},{"project":"DisGeNET","denotations":[{"id":"T0","span":{"begin":204,"end":207},"obj":"gene:7157"},{"id":"T1","span":{"begin":229,"end":242},"obj":"disease:C0596263"},{"id":"T2","span":{"begin":204,"end":207},"obj":"gene:7157"},{"id":"T3","span":{"begin":247,"end":257},"obj":"disease:C0027627"},{"id":"T4","span":{"begin":204,"end":207},"obj":"gene:7157"},{"id":"T5","span":{"begin":247,"end":257},"obj":"disease:C2939420"},{"id":"T6","span":{"begin":695,"end":698},"obj":"gene:7157"},{"id":"T7","span":{"begin":811,"end":824},"obj":"disease:C0596263"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T0","obj":"T1"},{"id":"R2","pred":"associated_with","subj":"T2","obj":"T3"},{"id":"R3","pred":"associated_with","subj":"T4","obj":"T5"},{"id":"R4","pred":"associated_with","subj":"T6","obj":"T7"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"attributes":[{"subj":"T0","pred":"source","obj":"DisGeNET"},{"subj":"T1","pred":"source","obj":"DisGeNET"},{"subj":"T2","pred":"source","obj":"DisGeNET"},{"subj":"T3","pred":"source","obj":"DisGeNET"},{"subj":"T4","pred":"source","obj":"DisGeNET"},{"subj":"T5","pred":"source","obj":"DisGeNET"},{"subj":"T6","pred":"source","obj":"DisGeNET"},{"subj":"T7","pred":"source","obj":"DisGeNET"}]},{"project":"PubmedHPO","denotations":[{"id":"T1","span":{"begin":1408,"end":1419},"obj":"HP_0100526"},{"id":"T2","span":{"begin":1413,"end":1419},"obj":"HP_0002664"},{"id":"T3","span":{"begin":1423,"end":1431},"obj":"HP_0002861"},{"id":"T4","span":{"begin":1715,"end":1725},"obj":"HP_0100526"},{"id":"T5","span":{"begin":1720,"end":1725},"obj":"HP_0002664"},{"id":"T6","span":{"begin":1784,"end":1790},"obj":"HP_0002664"}],"attributes":[{"subj":"T1","pred":"source","obj":"PubmedHPO"},{"subj":"T2","pred":"source","obj":"PubmedHPO"},{"subj":"T3","pred":"source","obj":"PubmedHPO"},{"subj":"T4","pred":"source","obj":"PubmedHPO"},{"subj":"T5","pred":"source","obj":"PubmedHPO"},{"subj":"T6","pred":"source","obj":"PubmedHPO"}]},{"project":"Allie","denotations":[{"id":"SS1_22114072_3_0","span":{"begin":312,"end":328},"obj":"expanded"},{"id":"SS2_22114072_3_0","span":{"begin":330,"end":333},"obj":"abbr"},{"id":"SS1_22114072_4_0","span":{"begin":469,"end":485},"obj":"expanded"},{"id":"SS2_22114072_4_0","span":{"begin":487,"end":491},"obj":"abbr"}],"relations":[{"id":"AE1_22114072_3_0","pred":"abbreviatedTo","subj":"SS1_22114072_3_0","obj":"SS2_22114072_3_0"},{"id":"AE1_22114072_4_0","pred":"abbreviatedTo","subj":"SS1_22114072_4_0","obj":"SS2_22114072_4_0"}],"attributes":[{"subj":"SS1_22114072_3_0","pred":"source","obj":"Allie"},{"subj":"SS2_22114072_3_0","pred":"source","obj":"Allie"},{"subj":"SS1_22114072_4_0","pred":"source","obj":"Allie"},{"subj":"SS2_22114072_4_0","pred":"source","obj":"Allie"}]},{"project":"DisGeNET5_gene_disease","denotations":[{"id":"22114072-10#57#60#gene7157","span":{"begin":1401,"end":1404},"obj":"gene7157"},{"id":"22114072-10#102#107#gene6374","span":{"begin":1446,"end":1451},"obj":"gene6374"},{"id":"22114072-10#64#75#diseaseC0242379","span":{"begin":1408,"end":1419},"obj":"diseaseC0242379"},{"id":"22114072-10#64#75#diseaseC0684249","span":{"begin":1408,"end":1419},"obj":"diseaseC0684249"},{"id":"22114072-10#64#75#diseaseC1306460","span":{"begin":1408,"end":1419},"obj":"diseaseC1306460"},{"id":"22114072-10#64#75#diseaseC0242379","span":{"begin":1408,"end":1419},"obj":"diseaseC0242379"},{"id":"22114072-10#64#75#diseaseC0684249","span":{"begin":1408,"end":1419},"obj":"diseaseC0684249"},{"id":"22114072-10#64#75#diseaseC1306460","span":{"begin":1408,"end":1419},"obj":"diseaseC1306460"},{"id":"22114072-12#9#14#gene6374","span":{"begin":1677,"end":1682},"obj":"gene6374"},{"id":"22114072-12#47#57#diseaseC0024121","span":{"begin":1715,"end":1725},"obj":"diseaseC0024121"},{"id":"22114072-2#42#45#gene7157","span":{"begin":204,"end":207},"obj":"gene7157"},{"id":"22114072-2#85#95#diseaseC0027627","span":{"begin":247,"end":257},"obj":"diseaseC0027627"},{"id":"22114072-6#18#21#gene7157","span":{"begin":695,"end":698},"obj":"gene7157"},{"id":"22114072-6#134#147#diseaseC0596263","span":{"begin":811,"end":824},"obj":"diseaseC0596263"}],"relations":[{"id":"57#60#gene715764#75#diseaseC0242379","pred":"associated_with","subj":"22114072-10#57#60#gene7157","obj":"22114072-10#64#75#diseaseC0242379"},{"id":"57#60#gene715764#75#diseaseC0684249","pred":"associated_with","subj":"22114072-10#57#60#gene7157","obj":"22114072-10#64#75#diseaseC0684249"},{"id":"57#60#gene715764#75#diseaseC1306460","pred":"associated_with","subj":"22114072-10#57#60#gene7157","obj":"22114072-10#64#75#diseaseC1306460"},{"id":"57#60#gene715764#75#diseaseC0242379","pred":"associated_with","subj":"22114072-10#57#60#gene7157","obj":"22114072-10#64#75#diseaseC0242379"},{"id":"57#60#gene715764#75#diseaseC0684249","pred":"associated_with","subj":"22114072-10#57#60#gene7157","obj":"22114072-10#64#75#diseaseC0684249"},{"id":"57#60#gene715764#75#diseaseC1306460","pred":"associated_with","subj":"22114072-10#57#60#gene7157","obj":"22114072-10#64#75#diseaseC1306460"},{"id":"102#107#gene637464#75#diseaseC0242379","pred":"associated_with","subj":"22114072-10#102#107#gene6374","obj":"22114072-10#64#75#diseaseC0242379"},{"id":"102#107#gene637464#75#diseaseC0684249","pred":"associated_with","subj":"22114072-10#102#107#gene6374","obj":"22114072-10#64#75#diseaseC0684249"},{"id":"102#107#gene637464#75#diseaseC1306460","pred":"associated_with","subj":"22114072-10#102#107#gene6374","obj":"22114072-10#64#75#diseaseC1306460"},{"id":"102#107#gene637464#75#diseaseC0242379","pred":"associated_with","subj":"22114072-10#102#107#gene6374","obj":"22114072-10#64#75#diseaseC0242379"},{"id":"102#107#gene637464#75#diseaseC0684249","pred":"associated_with","subj":"22114072-10#102#107#gene6374","obj":"22114072-10#64#75#diseaseC0684249"},{"id":"102#107#gene637464#75#diseaseC1306460","pred":"associated_with","subj":"22114072-10#102#107#gene6374","obj":"22114072-10#64#75#diseaseC1306460"},{"id":"9#14#gene637447#57#diseaseC0024121","pred":"associated_with","subj":"22114072-12#9#14#gene6374","obj":"22114072-12#47#57#diseaseC0024121"},{"id":"42#45#gene715785#95#diseaseC0027627","pred":"associated_with","subj":"22114072-2#42#45#gene7157","obj":"22114072-2#85#95#diseaseC0027627"},{"id":"18#21#gene7157134#147#diseaseC0596263","pred":"associated_with","subj":"22114072-6#18#21#gene7157","obj":"22114072-6#134#147#diseaseC0596263"}],"attributes":[{"subj":"22114072-10#57#60#gene7157","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"22114072-10#102#107#gene6374","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"22114072-10#64#75#diseaseC0242379","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"22114072-10#64#75#diseaseC0684249","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"22114072-10#64#75#diseaseC1306460","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"22114072-10#64#75#diseaseC0242379","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"22114072-10#64#75#diseaseC0684249","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"22114072-10#64#75#diseaseC1306460","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"22114072-12#9#14#gene6374","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"22114072-12#47#57#diseaseC0024121","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"22114072-2#42#45#gene7157","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"22114072-2#85#95#diseaseC0027627","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"22114072-6#18#21#gene7157","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"22114072-6#134#147#diseaseC0596263","pred":"source","obj":"DisGeNET5_gene_disease"}]},{"project":"kaiyin_test","denotations":[{"id":"T1","span":{"begin":17,"end":23},"obj":"Var"},{"id":"T2","span":{"begin":24,"end":27},"obj":"Gene"},{"id":"T5","span":{"begin":28,"end":39},"obj":"PosReg"},{"id":"T6","span":{"begin":40,"end":54},"obj":"MPA"},{"id":"T3","span":{"begin":59,"end":67},"obj":"PosReg"},{"id":"T4","span":{"begin":68,"end":82},"obj":"CPA"},{"id":"T7","span":{"begin":195,"end":203},"obj":"Var"},{"id":"T8","span":{"begin":204,"end":216},"obj":"Protein"},{"id":"T9","span":{"begin":221,"end":228},"obj":"PosReg"},{"id":"T10","span":{"begin":229,"end":257},"obj":"CPA"},{"id":"T11","span":{"begin":390,"end":419},"obj":"Var"},{"id":"T12","span":{"begin":427,"end":435},"obj":"PosReg"},{"id":"T13","span":{"begin":436,"end":445},"obj":"CPA"},{"id":"T17","span":{"begin":691,"end":698},"obj":"Var"},{"id":"T18","span":{"begin":708,"end":718},"obj":"PosReg"},{"id":"T19","span":{"begin":719,"end":743},"obj":"MPA"},{"id":"T21","span":{"begin":826,"end":834},"obj":"PosReg"},{"id":"T22","span":{"begin":835,"end":845},"obj":"MPA"},{"id":"T20","span":{"begin":903,"end":916},"obj":"Var"},{"id":"T24","span":{"begin":918,"end":931},"obj":"MPA"},{"id":"T23","span":{"begin":936,"end":944},"obj":"PosReg"},{"id":"T27","span":{"begin":948,"end":981},"obj":"MPA"},{"id":"T26","span":{"begin":986,"end":992},"obj":"PosReg"},{"id":"T25","span":{"begin":1013,"end":1020},"obj":"Var"},{"id":"T31","span":{"begin":1383,"end":1400},"obj":"Var"},{"id":"T32","span":{"begin":1401,"end":1404},"obj":"Gene"},{"id":"T33","span":{"begin":1438,"end":1445},"obj":"NegReg"},{"id":"T34","span":{"begin":1446,"end":1462},"obj":"MPA"},{"id":"T35","span":{"begin":1467,"end":1481},"obj":"CPA"},{"id":"T36","span":{"begin":1527,"end":1533},"obj":"Var"},{"id":"T37","span":{"begin":1534,"end":1537},"obj":"Gene"},{"id":"T38","span":{"begin":1558,"end":1565},"obj":"NegReg"},{"id":"T39","span":{"begin":1566,"end":1603},"obj":"MPA"},{"id":"T42","span":{"begin":1677,"end":1693},"obj":"MPA"},{"id":"T40","span":{"begin":1703,"end":1711},"obj":"PosReg"},{"id":"T43","span":{"begin":1715,"end":1725},"obj":"Disease"},{"id":"T41","span":{"begin":1745,"end":1752},"obj":"Var"}],"relations":[{"id":"R1","pred":"CauseOf","subj":"T1","obj":"T5"},{"id":"R11","pred":"CauseOf","subj":"T11","obj":"T12"},{"id":"R12","pred":"ThemeOf","subj":"T13","obj":"T12"},{"id":"R13","pred":"CauseOf","subj":"T17","obj":"T18"},{"id":"R14","pred":"ThemeOf","subj":"T19","obj":"T18"},{"id":"R15","pred":"CauseOf","subj":"T20","obj":"T21"},{"id":"R16","pred":"ThemeOf","subj":"T22","obj":"T21"},{"id":"R17","pred":"CauseOf","subj":"T25","obj":"T26"},{"id":"R18","pred":"ThemeOf","subj":"T27","obj":"T26"},{"id":"R19","pred":"CauseOf","subj":"T27","obj":"T23"},{"id":"R2","pred":"ThemeOf","subj":"T6","obj":"T5"},{"id":"R20","pred":"ThemeOf","subj":"T24","obj":"T23"},{"id":"R23","pred":"CauseOf","subj":"T31","obj":"T33"},{"id":"R24","pred":"ThemeOf","subj":"T34","obj":"T33"},{"id":"R25","pred":"ThemeOf","subj":"T35","obj":"T33"},{"id":"R26","pred":"ThemeOf","subj":"T32","obj":"T31"},{"id":"R27","pred":"CauseOf","subj":"T36","obj":"T38"},{"id":"R28","pred":"ThemeOf","subj":"T39","obj":"T38"},{"id":"R29","pred":"ThemeOf","subj":"T37","obj":"T36"},{"id":"R3","pred":"ThemeOf","subj":"T2","obj":"T1"},{"id":"R30","pred":"CauseOf","subj":"T41","obj":"T40"},{"id":"R31","pred":"ThemeOf","subj":"T42","obj":"T40"},{"id":"R32","pred":"ThemeOf","subj":"T43","obj":"T40"},{"id":"R4","pred":"CauseOf","subj":"T6","obj":"T3"},{"id":"R5","pred":"ThemeOf","subj":"T4","obj":"T3"},{"id":"R6","pred":"CauseOf","subj":"T7","obj":"T9"},{"id":"R7","pred":"ThemeOf","subj":"T10","obj":"T9"},{"id":"R8","pred":"ThemeOf","subj":"T8","obj":"T7"}],"attributes":[{"subj":"T1","pred":"source","obj":"kaiyin_test"},{"subj":"T2","pred":"source","obj":"kaiyin_test"},{"subj":"T5","pred":"source","obj":"kaiyin_test"},{"subj":"T6","pred":"source","obj":"kaiyin_test"},{"subj":"T3","pred":"source","obj":"kaiyin_test"},{"subj":"T4","pred":"source","obj":"kaiyin_test"},{"subj":"T7","pred":"source","obj":"kaiyin_test"},{"subj":"T8","pred":"source","obj":"kaiyin_test"},{"subj":"T9","pred":"source","obj":"kaiyin_test"},{"subj":"T10","pred":"source","obj":"kaiyin_test"},{"subj":"T11","pred":"source","obj":"kaiyin_test"},{"subj":"T12","pred":"source","obj":"kaiyin_test"},{"subj":"T13","pred":"source","obj":"kaiyin_test"},{"subj":"T17","pred":"source","obj":"kaiyin_test"},{"subj":"T18","pred":"source","obj":"kaiyin_test"},{"subj":"T19","pred":"source","obj":"kaiyin_test"},{"subj":"T21","pred":"source","obj":"kaiyin_test"},{"subj":"T22","pred":"source","obj":"kaiyin_test"},{"subj":"T20","pred":"source","obj":"kaiyin_test"},{"subj":"T24","pred":"source","obj":"kaiyin_test"},{"subj":"T23","pred":"source","obj":"kaiyin_test"},{"subj":"T27","pred":"source","obj":"kaiyin_test"},{"subj":"T26","pred":"source","obj":"kaiyin_test"},{"subj":"T25","pred":"source","obj":"kaiyin_test"},{"subj":"T31","pred":"source","obj":"kaiyin_test"},{"subj":"T32","pred":"source","obj":"kaiyin_test"},{"subj":"T33","pred":"source","obj":"kaiyin_test"},{"subj":"T34","pred":"source","obj":"kaiyin_test"},{"subj":"T35","pred":"source","obj":"kaiyin_test"},{"subj":"T36","pred":"source","obj":"kaiyin_test"},{"subj":"T37","pred":"source","obj":"kaiyin_test"},{"subj":"T38","pred":"source","obj":"kaiyin_test"},{"subj":"T39","pred":"source","obj":"kaiyin_test"},{"subj":"T42","pred":"source","obj":"kaiyin_test"},{"subj":"T40","pred":"source","obj":"kaiyin_test"},{"subj":"T43","pred":"source","obj":"kaiyin_test"},{"subj":"T41","pred":"source","obj":"kaiyin_test"}]},{"project":"name_no","denotations":[{"id":"T1","span":{"begin":17,"end":23},"obj":"Var"},{"id":"T2","span":{"begin":24,"end":27},"obj":"Gene"},{"id":"T5","span":{"begin":28,"end":39},"obj":"PosReg"},{"id":"T6","span":{"begin":40,"end":54},"obj":"MPA"},{"id":"T3","span":{"begin":59,"end":67},"obj":"PosReg"},{"id":"T4","span":{"begin":68,"end":82},"obj":"CPA"},{"id":"T7","span":{"begin":195,"end":203},"obj":"Var"},{"id":"T8","span":{"begin":204,"end":216},"obj":"Protein"},{"id":"T9","span":{"begin":221,"end":228},"obj":"PosReg"},{"id":"T10","span":{"begin":229,"end":257},"obj":"CPA"},{"id":"T11","span":{"begin":390,"end":419},"obj":"Var"},{"id":"T12","span":{"begin":427,"end":435},"obj":"PosReg"},{"id":"T13","span":{"begin":436,"end":445},"obj":"CPA"},{"id":"T17","span":{"begin":691,"end":698},"obj":"Var"},{"id":"T18","span":{"begin":708,"end":718},"obj":"PosReg"},{"id":"T19","span":{"begin":719,"end":743},"obj":"MPA"},{"id":"T21","span":{"begin":826,"end":834},"obj":"PosReg"},{"id":"T22","span":{"begin":835,"end":845},"obj":"MPA"},{"id":"T20","span":{"begin":903,"end":916},"obj":"Var"},{"id":"T24","span":{"begin":918,"end":931},"obj":"MPA"},{"id":"T23","span":{"begin":936,"end":944},"obj":"PosReg"},{"id":"T27","span":{"begin":948,"end":981},"obj":"MPA"},{"id":"T26","span":{"begin":986,"end":992},"obj":"PosReg"},{"id":"T25","span":{"begin":1013,"end":1020},"obj":"Var"},{"id":"T31","span":{"begin":1383,"end":1400},"obj":"Var"},{"id":"T32","span":{"begin":1401,"end":1404},"obj":"Gene"},{"id":"T33","span":{"begin":1438,"end":1445},"obj":"NegReg"},{"id":"T34","span":{"begin":1446,"end":1462},"obj":"MPA"},{"id":"T35","span":{"begin":1467,"end":1481},"obj":"CPA"},{"id":"T36","span":{"begin":1527,"end":1533},"obj":"Var"},{"id":"T37","span":{"begin":1534,"end":1537},"obj":"Gene"},{"id":"T38","span":{"begin":1558,"end":1565},"obj":"NegReg"},{"id":"T39","span":{"begin":1566,"end":1603},"obj":"MPA"},{"id":"T42","span":{"begin":1677,"end":1693},"obj":"MPA"},{"id":"T40","span":{"begin":1703,"end":1711},"obj":"PosReg"},{"id":"T43","span":{"begin":1715,"end":1725},"obj":"Disease"},{"id":"T41","span":{"begin":1745,"end":1752},"obj":"Var"}],"relations":[{"id":"R1","pred":"CauseOf","subj":"T1","obj":"T5"},{"id":"R11","pred":"CauseOf","subj":"T11","obj":"T12"},{"id":"R12","pred":"ThemeOf","subj":"T13","obj":"T12"},{"id":"R13","pred":"CauseOf","subj":"T17","obj":"T18"},{"id":"R14","pred":"ThemeOf","subj":"T19","obj":"T18"},{"id":"R15","pred":"CauseOf","subj":"T20","obj":"T21"},{"id":"R16","pred":"ThemeOf","subj":"T22","obj":"T21"},{"id":"R17","pred":"CauseOf","subj":"T25","obj":"T26"},{"id":"R18","pred":"ThemeOf","subj":"T27","obj":"T26"},{"id":"R19","pred":"CauseOf","subj":"T27","obj":"T23"},{"id":"R2","pred":"ThemeOf","subj":"T6","obj":"T5"},{"id":"R20","pred":"ThemeOf","subj":"T24","obj":"T23"},{"id":"R23","pred":"CauseOf","subj":"T31","obj":"T33"},{"id":"R24","pred":"ThemeOf","subj":"T34","obj":"T33"},{"id":"R25","pred":"ThemeOf","subj":"T35","obj":"T33"},{"id":"R26","pred":"ThemeOf","subj":"T32","obj":"T31"},{"id":"R27","pred":"CauseOf","subj":"T36","obj":"T38"},{"id":"R28","pred":"ThemeOf","subj":"T39","obj":"T38"},{"id":"R29","pred":"ThemeOf","subj":"T37","obj":"T36"},{"id":"R3","pred":"ThemeOf","subj":"T2","obj":"T1"},{"id":"R30","pred":"CauseOf","subj":"T41","obj":"T40"},{"id":"R31","pred":"ThemeOf","subj":"T42","obj":"T40"},{"id":"R32","pred":"ThemeOf","subj":"T43","obj":"T40"},{"id":"R4","pred":"CauseOf","subj":"T6","obj":"T3"},{"id":"R5","pred":"ThemeOf","subj":"T4","obj":"T3"},{"id":"R6","pred":"CauseOf","subj":"T7","obj":"T9"},{"id":"R7","pred":"ThemeOf","subj":"T10","obj":"T9"},{"id":"R8","pred":"ThemeOf","subj":"T8","obj":"T7"}],"attributes":[{"subj":"T1","pred":"source","obj":"name_no"},{"subj":"T2","pred":"source","obj":"name_no"},{"subj":"T5","pred":"source","obj":"name_no"},{"subj":"T6","pred":"source","obj":"name_no"},{"subj":"T3","pred":"source","obj":"name_no"},{"subj":"T4","pred":"source","obj":"name_no"},{"subj":"T7","pred":"source","obj":"name_no"},{"subj":"T8","pred":"source","obj":"name_no"},{"subj":"T9","pred":"source","obj":"name_no"},{"subj":"T10","pred":"source","obj":"name_no"},{"subj":"T11","pred":"source","obj":"name_no"},{"subj":"T12","pred":"source","obj":"name_no"},{"subj":"T13","pred":"source","obj":"name_no"},{"subj":"T17","pred":"source","obj":"name_no"},{"subj":"T18","pred":"source","obj":"name_no"},{"subj":"T19","pred":"source","obj":"name_no"},{"subj":"T21","pred":"source","obj":"name_no"},{"subj":"T22","pred":"source","obj":"name_no"},{"subj":"T20","pred":"source","obj":"name_no"},{"subj":"T24","pred":"source","obj":"name_no"},{"subj":"T23","pred":"source","obj":"name_no"},{"subj":"T27","pred":"source","obj":"name_no"},{"subj":"T26","pred":"source","obj":"name_no"},{"subj":"T25","pred":"source","obj":"name_no"},{"subj":"T31","pred":"source","obj":"name_no"},{"subj":"T32","pred":"source","obj":"name_no"},{"subj":"T33","pred":"source","obj":"name_no"},{"subj":"T34","pred":"source","obj":"name_no"},{"subj":"T35","pred":"source","obj":"name_no"},{"subj":"T36","pred":"source","obj":"name_no"},{"subj":"T37","pred":"source","obj":"name_no"},{"subj":"T38","pred":"source","obj":"name_no"},{"subj":"T39","pred":"source","obj":"name_no"},{"subj":"T42","pred":"source","obj":"name_no"},{"subj":"T40","pred":"source","obj":"name_no"},{"subj":"T43","pred":"source","obj":"name_no"},{"subj":"T41","pred":"source","obj":"name_no"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"sonoma2","color":"#93ec97","default":true},{"id":"DisGeNET","color":"#ec93a8"},{"id":"PubmedHPO","color":"#93c3ec"},{"id":"Allie","color":"#ddec93"},{"id":"DisGeNET5_gene_disease","color":"#e193ec"},{"id":"kaiyin_test","color":"#93ecc7"},{"id":"name_no","color":"#ecad93"}]}]}}