PubMed:21810259
Annnotations
TEST-CellLine
Id | Subject | Object | Predicate | Lexical cue | cellosaurus_accession_id |
---|---|---|---|---|---|
T1 | 584-591 | CellLine | denotes | C57BL/6 | AddedByYayamamo |
TEST-DiseaseOrPhenotypicFeature
Id | Subject | Object | Predicate | Lexical cue | #label |
---|---|---|---|---|---|
T1 | 337-347 | DiseaseOrPhenotypicFeature | denotes | depressive | DISEASE |
T2 | 377-393 | DiseaseOrPhenotypicFeature | denotes | immunodeficiency | DISEASE |
T3 | 434-444 | DiseaseOrPhenotypicFeature | denotes | depressive | DISEASE |
T4 | 607-617 | DiseaseOrPhenotypicFeature | denotes | Depressive | DISEASE |
T5 | 983-993 | DiseaseOrPhenotypicFeature | denotes | depressive | DISEASE |
T6 | 2059-2079 | DiseaseOrPhenotypicFeature | denotes | depressive disorders | D003866 |
T7 | 2083-2097 | DiseaseOrPhenotypicFeature | denotes | HIV-1-infected | DISEASE |
TEST-ChemicalEntity
Id | Subject | Object | Predicate | Lexical cue | ID: |
---|---|---|---|---|---|
T1 | 20-47 | ChemicalEntity | denotes | indoleamine 2,3 dioxygenase | D050503 |
T2 | 212-222 | ChemicalEntity | denotes | tryptophan | http://purl.obolibrary.org/obo/CHEBI_57912|http://purl.obolibrary.org/obo/CHEBI_57719|http://purl.obolibrary.org/obo/CHEBI_27897|http://purl.obolibrary.org/obo/CHEBI_16828 |
T6 | 240-267 | ChemicalEntity | denotes | indoleamine 2,3 dioxygenase | D050503 |
T7 | 269-272 | ChemicalEntity | denotes | IDO | D050503 |
T8 | 508-511 | ChemicalEntity | denotes | IDO | D050503 |
T9 | 715-718 | ChemicalEntity | denotes | IDO | D050503 |
T10 | 1097-1100 | ChemicalEntity | denotes | IDO | D050503 |
T11 | 1348-1369 | ChemicalEntity | denotes | nitric oxide synthase | D019001 |
T12 | 1385-1394 | ChemicalEntity | denotes | serotonin | D012701|http://purl.obolibrary.org/obo/CHEBI_350546|http://purl.obolibrary.org/obo/CHEBI_28790 |
T15 | 1507-1510 | ChemicalEntity | denotes | IDO | D050503 |
T16 | 1609-1618 | ChemicalEntity | denotes | SB 202190 | C090942|http://purl.obolibrary.org/obo/CHEBI_79090 |
T18 | 1652-1661 | ChemicalEntity | denotes | SB 202190 | C090942|http://purl.obolibrary.org/obo/CHEBI_79090 |
T20 | 1686-1689 | ChemicalEntity | denotes | IDO | D050503 |
T21 | 1870-1873 | ChemicalEntity | denotes | IDO | D050503 |
T22 | 1971-1974 | ChemicalEntity | denotes | IDO | D050503 |
TEST-OrganismTaxon
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 0-5 | OrganismTaxon | denotes | HIV-1 |
T2 | 51-57 | OrganismTaxon | denotes | murine |
T3 | 371-376 | OrganismTaxon | denotes | human |
T4 | 394-399 | OrganismTaxon | denotes | virus |
T5 | 408-413 | OrganismTaxon | denotes | HIV-1 |
T6 | 462-466 | OrganismTaxon | denotes | mice |
T7 | 592-596 | OrganismTaxon | denotes | mice |
T8 | 644-648 | OrganismTaxon | denotes | mice |
T9 | 2083-2088 | OrganismTaxon | denotes | HIV-1 |
T10 | 2098-2106 | OrganismTaxon | denotes | patients |
Test-GeneOrGeneProduct
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 36-47 | GeneOrGeneProduct | denotes | dioxygenase |
T2 | 102-138 | GeneOrGeneProduct | denotes | p38 mitogen-activated protein kinase |
T3 | 256-267 | GeneOrGeneProduct | denotes | dioxygenase |
T4 | 269-272 | GeneOrGeneProduct | denotes | IDO |
T5 | 415-426 | GeneOrGeneProduct | denotes | Tat protein |
T6 | 508-511 | GeneOrGeneProduct | denotes | IDO |
T7 | 715-718 | GeneOrGeneProduct | denotes | IDO |
T8 | 848-856 | GeneOrGeneProduct | denotes | p38 MAPK |
T9 | 1097-1100 | GeneOrGeneProduct | denotes | IDO |
T10 | 1188-1192 | GeneOrGeneProduct | denotes | IFNγ |
T11 | 1240-1244 | GeneOrGeneProduct | denotes | TNFα |
T12 | 1249-1253 | GeneOrGeneProduct | denotes | IL-6 |
T13 | 1348-1369 | GeneOrGeneProduct | denotes | nitric oxide synthase |
T14 | 1371-1375 | GeneOrGeneProduct | denotes | iNOS |
T15 | 1385-1406 | GeneOrGeneProduct | denotes | serotonin transporter |
T16 | 1408-1412 | GeneOrGeneProduct | denotes | SERT |
T17 | 1460-1464 | GeneOrGeneProduct | denotes | IFNγ |
T18 | 1507-1510 | GeneOrGeneProduct | denotes | IDO |
T19 | 1555-1591 | GeneOrGeneProduct | denotes | p38 mitogen-activated protein kinase |
T20 | 1593-1597 | GeneOrGeneProduct | denotes | MAPK |
T21 | 1686-1689 | GeneOrGeneProduct | denotes | IDO |
T22 | 1793-1797 | GeneOrGeneProduct | denotes | TNFα |
T23 | 1799-1803 | GeneOrGeneProduct | denotes | IL-6 |
T24 | 1805-1809 | GeneOrGeneProduct | denotes | iNOS |
T25 | 1814-1818 | GeneOrGeneProduct | denotes | SERT |
T26 | 1870-1873 | GeneOrGeneProduct | denotes | IDO |
T27 | 1892-1896 | GeneOrGeneProduct | denotes | IFNγ |
T28 | 1951-1959 | GeneOrGeneProduct | denotes | p38 MAPK |
T29 | 1971-1974 | GeneOrGeneProduct | denotes | IDO |
T30 | 1989-1997 | GeneOrGeneProduct | denotes | p38 MAPK |
Test-merged-2
Id | Subject | Object | Predicate | Lexical cue | #label | ID: | cellosaurus_accession_id |
---|---|---|---|---|---|---|---|
T81992 | 584-591 | CellLine | denotes | C57BL/6 | AddedByYayamamo | ||
T47207 | 20-47 | ChemicalEntity | denotes | indoleamine 2,3 dioxygenase | D050503 | ||
T40192 | 212-222 | ChemicalEntity | denotes | tryptophan | http://purl.obolibrary.org/obo/CHEBI_57912|http://purl.obolibrary.org/obo/CHEBI_57719|http://purl.obolibrary.org/obo/CHEBI_27897|http://purl.obolibrary.org/obo/CHEBI_16828 | ||
T35941 | 240-267 | ChemicalEntity | denotes | indoleamine 2,3 dioxygenase | D050503 | ||
T24651 | 269-272 | ChemicalEntity | denotes | IDO | D050503 | ||
T95167 | 508-511 | ChemicalEntity | denotes | IDO | D050503 | ||
T15820 | 715-718 | ChemicalEntity | denotes | IDO | D050503 | ||
T79892 | 1097-1100 | ChemicalEntity | denotes | IDO | D050503 | ||
T10960 | 1348-1369 | ChemicalEntity | denotes | nitric oxide synthase | D019001 | ||
T16874 | 1385-1394 | ChemicalEntity | denotes | serotonin | D012701|http://purl.obolibrary.org/obo/CHEBI_350546|http://purl.obolibrary.org/obo/CHEBI_28790 | ||
T50079 | 1507-1510 | ChemicalEntity | denotes | IDO | D050503 | ||
T1155 | 1609-1618 | ChemicalEntity | denotes | SB 202190 | C090942|http://purl.obolibrary.org/obo/CHEBI_79090 | ||
T73816 | 1652-1661 | ChemicalEntity | denotes | SB 202190 | C090942|http://purl.obolibrary.org/obo/CHEBI_79090 | ||
T10324 | 1686-1689 | ChemicalEntity | denotes | IDO | D050503 | ||
T83700 | 1870-1873 | ChemicalEntity | denotes | IDO | D050503 | ||
T94716 | 1971-1974 | ChemicalEntity | denotes | IDO | D050503 | ||
T99469 | 36-47 | GeneOrGeneProduct | denotes | dioxygenase | |||
T88327 | 102-138 | GeneOrGeneProduct | denotes | p38 mitogen-activated protein kinase | |||
T89183 | 256-267 | GeneOrGeneProduct | denotes | dioxygenase | |||
T30093 | 269-272 | GeneOrGeneProduct | denotes | IDO | |||
T62633 | 415-426 | GeneOrGeneProduct | denotes | Tat protein | |||
T72407 | 508-511 | GeneOrGeneProduct | denotes | IDO | |||
T16454 | 715-718 | GeneOrGeneProduct | denotes | IDO | |||
T75505 | 848-856 | GeneOrGeneProduct | denotes | p38 MAPK | |||
T49837 | 1097-1100 | GeneOrGeneProduct | denotes | IDO | |||
T2809 | 1188-1192 | GeneOrGeneProduct | denotes | IFNγ | |||
T11 | 1240-1244 | GeneOrGeneProduct | denotes | TNFα | |||
T12 | 1249-1253 | GeneOrGeneProduct | denotes | IL-6 | |||
T13 | 1348-1369 | GeneOrGeneProduct | denotes | nitric oxide synthase | |||
T14 | 1371-1375 | GeneOrGeneProduct | denotes | iNOS | |||
T15 | 1385-1406 | GeneOrGeneProduct | denotes | serotonin transporter | |||
T16 | 1408-1412 | GeneOrGeneProduct | denotes | SERT | |||
T17 | 1460-1464 | GeneOrGeneProduct | denotes | IFNγ | |||
T18 | 1507-1510 | GeneOrGeneProduct | denotes | IDO | |||
T19 | 1555-1591 | GeneOrGeneProduct | denotes | p38 mitogen-activated protein kinase | |||
T20 | 1593-1597 | GeneOrGeneProduct | denotes | MAPK | |||
T21 | 1686-1689 | GeneOrGeneProduct | denotes | IDO | |||
T22 | 1793-1797 | GeneOrGeneProduct | denotes | TNFα | |||
T23 | 1799-1803 | GeneOrGeneProduct | denotes | IL-6 | |||
T24 | 1805-1809 | GeneOrGeneProduct | denotes | iNOS | |||
T25 | 1814-1818 | GeneOrGeneProduct | denotes | SERT | |||
T26 | 1870-1873 | GeneOrGeneProduct | denotes | IDO | |||
T27 | 1892-1896 | GeneOrGeneProduct | denotes | IFNγ | |||
T28 | 1951-1959 | GeneOrGeneProduct | denotes | p38 MAPK | |||
T29 | 1971-1974 | GeneOrGeneProduct | denotes | IDO | |||
T30 | 1989-1997 | GeneOrGeneProduct | denotes | p38 MAPK | |||
T75523 | 0-5 | OrganismTaxon | denotes | HIV-1 | |||
T37478 | 51-57 | OrganismTaxon | denotes | murine | |||
T81453 | 371-376 | OrganismTaxon | denotes | human | |||
T58038 | 394-399 | OrganismTaxon | denotes | virus | |||
T40732 | 408-413 | OrganismTaxon | denotes | HIV-1 | |||
T59607 | 462-466 | OrganismTaxon | denotes | mice | |||
T93751 | 592-596 | OrganismTaxon | denotes | mice | |||
T8 | 644-648 | OrganismTaxon | denotes | mice | |||
T9 | 2083-2088 | OrganismTaxon | denotes | HIV-1 | |||
T10 | 2098-2106 | OrganismTaxon | denotes | patients | |||
T1 | 337-347 | DiseaseOrPhenotypicFeature | denotes | depressive | DISEASE | ||
T2 | 377-393 | DiseaseOrPhenotypicFeature | denotes | immunodeficiency | DISEASE | ||
T3 | 434-444 | DiseaseOrPhenotypicFeature | denotes | depressive | DISEASE | ||
T4 | 607-617 | DiseaseOrPhenotypicFeature | denotes | Depressive | DISEASE | ||
T5 | 983-993 | DiseaseOrPhenotypicFeature | denotes | depressive | DISEASE | ||
T6 | 2059-2079 | DiseaseOrPhenotypicFeature | denotes | depressive disorders | D003866 | ||
T7 | 2083-2097 | DiseaseOrPhenotypicFeature | denotes | HIV-1-infected | DISEASE |
Test-merged
Id | Subject | Object | Predicate | Lexical cue | #label | ID: | cellosaurus_accession_id |
---|---|---|---|---|---|---|---|
T7 | 2083-2097 | DiseaseOrPhenotypicFeature | denotes | HIV-1-infected | DISEASE | ||
T6 | 2059-2079 | DiseaseOrPhenotypicFeature | denotes | depressive disorders | D003866 | ||
T5 | 983-993 | DiseaseOrPhenotypicFeature | denotes | depressive | DISEASE | ||
T4 | 607-617 | DiseaseOrPhenotypicFeature | denotes | Depressive | DISEASE | ||
T3 | 434-444 | DiseaseOrPhenotypicFeature | denotes | depressive | DISEASE | ||
T2 | 377-393 | DiseaseOrPhenotypicFeature | denotes | immunodeficiency | DISEASE | ||
T1 | 337-347 | DiseaseOrPhenotypicFeature | denotes | depressive | DISEASE | ||
T10 | 2098-2106 | OrganismTaxon | denotes | patients | |||
T8 | 644-648 | OrganismTaxon | denotes | mice | |||
T93751 | 592-596 | OrganismTaxon | denotes | mice | |||
T59607 | 462-466 | OrganismTaxon | denotes | mice | |||
T40732 | 408-413 | OrganismTaxon | denotes | HIV-1 | |||
T58038 | 394-399 | OrganismTaxon | denotes | virus | |||
T81453 | 371-376 | OrganismTaxon | denotes | human | |||
T37478 | 51-57 | OrganismTaxon | denotes | murine | |||
T75523 | 0-5 | OrganismTaxon | denotes | HIV-1 | |||
T30 | 1989-1997 | GeneOrGeneProduct | denotes | p38 MAPK | |||
T28 | 1951-1959 | GeneOrGeneProduct | denotes | p38 MAPK | |||
T27 | 1892-1896 | GeneOrGeneProduct | denotes | IFNγ | |||
T25 | 1814-1818 | GeneOrGeneProduct | denotes | SERT | |||
T24 | 1805-1809 | GeneOrGeneProduct | denotes | iNOS | |||
T23 | 1799-1803 | GeneOrGeneProduct | denotes | IL-6 | |||
T22 | 1793-1797 | GeneOrGeneProduct | denotes | TNFα | |||
T20 | 1593-1597 | GeneOrGeneProduct | denotes | MAPK | |||
T19 | 1555-1591 | GeneOrGeneProduct | denotes | p38 mitogen-activated protein kinase | |||
T17 | 1460-1464 | GeneOrGeneProduct | denotes | IFNγ | |||
T16 | 1408-1412 | GeneOrGeneProduct | denotes | SERT | |||
T15 | 1385-1406 | GeneOrGeneProduct | denotes | serotonin transporter | |||
T14 | 1371-1375 | GeneOrGeneProduct | denotes | iNOS | |||
T12 | 1249-1253 | GeneOrGeneProduct | denotes | IL-6 | |||
T11 | 1240-1244 | GeneOrGeneProduct | denotes | TNFα | |||
T2809 | 1188-1192 | GeneOrGeneProduct | denotes | IFNγ | |||
T75505 | 848-856 | GeneOrGeneProduct | denotes | p38 MAPK | |||
T62633 | 415-426 | GeneOrGeneProduct | denotes | Tat protein | |||
T88327 | 102-138 | GeneOrGeneProduct | denotes | p38 mitogen-activated protein kinase | |||
T94716 | 1971-1974 | ChemicalEntity | denotes | IDO | D050503 | ||
T83700 | 1870-1873 | ChemicalEntity | denotes | IDO | D050503 | ||
T10324 | 1686-1689 | ChemicalEntity | denotes | IDO | D050503 | ||
T73816 | 1652-1661 | ChemicalEntity | denotes | SB 202190 | http://purl.obolibrary.org/obo/CHEBI_79090|C090942 | ||
T1155 | 1609-1618 | ChemicalEntity | denotes | SB 202190 | http://purl.obolibrary.org/obo/CHEBI_79090|C090942 | ||
T50079 | 1507-1510 | ChemicalEntity | denotes | IDO | D050503 | ||
T10960 | 1348-1369 | ChemicalEntity | denotes | nitric oxide synthase | D019001 | ||
T79892 | 1097-1100 | ChemicalEntity | denotes | IDO | D050503 | ||
T15820 | 715-718 | ChemicalEntity | denotes | IDO | D050503 | ||
T95167 | 508-511 | ChemicalEntity | denotes | IDO | D050503 | ||
T24651 | 269-272 | ChemicalEntity | denotes | IDO | D050503 | ||
T35941 | 240-267 | ChemicalEntity | denotes | indoleamine 2,3 dioxygenase | D050503 | ||
T40192 | 212-222 | ChemicalEntity | denotes | tryptophan | http://purl.obolibrary.org/obo/CHEBI_16828|http://purl.obolibrary.org/obo/CHEBI_27897|http://purl.obolibrary.org/obo/CHEBI_57719|http://purl.obolibrary.org/obo/CHEBI_57912 | ||
T47207 | 20-47 | ChemicalEntity | denotes | indoleamine 2,3 dioxygenase | D050503 | ||
T81992 | 584-591 | CellLine | denotes | C57BL/6 | AddedByYayamamo |
DisGeNET
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T0 | 415-418 | gene:6898 | denotes | Tat |
T1 | 408-411 | disease:C0019693 | denotes | HIV |
T2 | 415-418 | gene:79969 | denotes | Tat |
T3 | 408-411 | disease:C0019693 | denotes | HIV |
R1 | T0 | T1 | associated_with | Tat,HIV |
R2 | T2 | T3 | associated_with | Tat,HIV |
PubmedHPO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 337-347 | HP_0000716 | denotes | depressive |
T2 | 377-393 | HP_0002721 | denotes | immunodeficiency |
T3 | 434-444 | HP_0000716 | denotes | depressive |
Allie
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
SS1_21810259_3_0 | 371-406 | expanded | denotes | human immunodeficiency virus type 1 |
SS2_21810259_3_0 | 408-413 | abbr | denotes | HIV-1 |
SS1_21810259_3_1 | 515-553 | expanded | denotes | organotypic hippocampal slice cultures |
SS2_21810259_3_1 | 555-560 | abbr | denotes | OHSCs |
SS1_21810259_6_0 | 803-837 | expanded | denotes | enzyme-linked immunosorbent assays |
SS2_21810259_6_0 | 839-845 | abbr | denotes | ELISAs |
SS1_21810259_8_0 | 912-935 | expanded | denotes | Intracerebroventricular |
SS2_21810259_8_0 | 937-943 | abbr | denotes | i.c.v. |
SS1_21810259_11_0 | 1337-1369 | expanded | denotes | isoform of nitric oxide synthase |
SS2_21810259_11_0 | 1371-1375 | abbr | denotes | iNOS |
SS1_21810259_11_1 | 1385-1406 | expanded | denotes | serotonin transporter |
SS2_21810259_11_1 | 1408-1412 | abbr | denotes | SERT |
SS1_21810259_13_0 | 1559-1591 | expanded | denotes | mitogen-activated protein kinase |
SS2_21810259_13_0 | 1593-1597 | abbr | denotes | MAPK |
AE1_21810259_3_0 | SS1_21810259_3_0 | SS2_21810259_3_0 | abbreviatedTo | human immunodeficiency virus type 1,HIV-1 |
AE1_21810259_3_1 | SS1_21810259_3_1 | SS2_21810259_3_1 | abbreviatedTo | organotypic hippocampal slice cultures,OHSCs |
AE1_21810259_6_0 | SS1_21810259_6_0 | SS2_21810259_6_0 | abbreviatedTo | enzyme-linked immunosorbent assays,ELISAs |
AE1_21810259_8_0 | SS1_21810259_8_0 | SS2_21810259_8_0 | abbreviatedTo | Intracerebroventricular,i.c.v. |
AE1_21810259_11_0 | SS1_21810259_11_0 | SS2_21810259_11_0 | abbreviatedTo | isoform of nitric oxide synthase,iNOS |
AE1_21810259_11_1 | SS1_21810259_11_1 | SS2_21810259_11_1 | abbreviatedTo | serotonin transporter,SERT |
AE1_21810259_13_0 | SS1_21810259_13_0 | SS2_21810259_13_0 | abbreviatedTo | mitogen-activated protein kinase,MAPK |
DisGeNET5_gene_disease
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
21810259-12#28#31#gene10598 | 1989-1992 | gene10598 | denotes | p38 |
21810259-12#28#31#gene7965 | 1989-1992 | gene7965 | denotes | p38 |
21810259-12#28#31#gene1398 | 1989-1992 | gene1398 | denotes | p38 |
21810259-12#28#31#gene9402 | 1989-1992 | gene9402 | denotes | p38 |
21810259-12#28#31#gene5594 | 1989-1992 | gene5594 | denotes | p38 |
21810259-12#28#31#gene1432 | 1989-1992 | gene1432 | denotes | p38 |
21810259-12#28#31#gene26073 | 1989-1992 | gene26073 | denotes | p38 |
21810259-12#28#31#gene25897 | 1989-1992 | gene25897 | denotes | p38 |
21810259-12#98#118#diseaseC0011581 | 2059-2079 | diseaseC0011581 | denotes | depressive disorders |
21810259-2#52#55#gene6898 | 415-418 | gene6898 | denotes | Tat |
21810259-2#8#36#diseaseC3854222 | 371-399 | diseaseC3854222 | denotes | human immunodeficiency virus |
28#31#gene1059898#118#diseaseC0011581 | 21810259-12#28#31#gene10598 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
28#31#gene796598#118#diseaseC0011581 | 21810259-12#28#31#gene7965 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
28#31#gene139898#118#diseaseC0011581 | 21810259-12#28#31#gene1398 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
28#31#gene940298#118#diseaseC0011581 | 21810259-12#28#31#gene9402 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
28#31#gene559498#118#diseaseC0011581 | 21810259-12#28#31#gene5594 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
28#31#gene143298#118#diseaseC0011581 | 21810259-12#28#31#gene1432 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
28#31#gene2607398#118#diseaseC0011581 | 21810259-12#28#31#gene26073 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
28#31#gene2589798#118#diseaseC0011581 | 21810259-12#28#31#gene25897 | 21810259-12#98#118#diseaseC0011581 | associated_with | p38,depressive disorders |
52#55#gene68988#36#diseaseC3854222 | 21810259-2#52#55#gene6898 | 21810259-2#8#36#diseaseC3854222 | associated_with | Tat,human immunodeficiency virus |